Wall clock time and date at job start Fri Apr 10 2020 17:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46855 * 2 1 4 4 H 1.09002 * 109.47062 * 178.90213 * 3 2 1 5 5 C 1.50699 * 109.46987 * 58.90971 * 3 2 1 6 6 H 1.07998 * 120.00340 * 240.38399 * 5 3 2 7 7 C 1.37882 * 120.00101 * 60.37904 * 5 3 2 8 8 N 1.31508 * 120.00311 * 197.39044 * 7 5 3 9 9 Si 1.86807 * 119.99740 * 17.39874 * 7 5 3 10 10 H 1.48502 * 109.47207 * 90.43434 * 9 7 5 11 11 H 1.48498 * 109.46657 * 210.43555 * 9 7 5 12 12 H 1.48495 * 109.46784 * 330.43220 * 9 7 5 13 13 N 1.46898 * 109.47420 * 298.90878 * 3 2 1 14 14 C 1.46892 * 110.99944 * 273.88896 * 13 3 2 15 15 C 1.50697 * 115.54950 * 296.86172 * 14 13 3 16 16 C 1.38269 * 119.99381 * 351.35636 * 15 14 13 17 17 C 1.38220 * 120.02572 * 179.97438 * 16 15 14 18 18 C 1.38241 * 120.01518 * 0.02562 * 17 16 15 19 19 C 1.38329 * 119.98784 * 0.02562 * 18 17 16 20 20 Cl 1.73592 * 120.01398 * 180.02562 * 19 18 17 21 21 C 1.38196 * 119.99506 * 171.08567 * 15 14 13 22 22 C 1.53002 * 117.50164 * 82.53276 * 14 13 3 23 23 C 1.53005 * 117.50178 * 151.18959 * 14 13 3 24 24 H 1.08990 * 109.47295 * 66.41841 * 1 2 3 25 25 H 1.08997 * 109.46808 * 186.42081 * 1 2 3 26 26 H 1.08998 * 109.46826 * 306.41304 * 1 2 3 27 27 H 1.08999 * 109.46752 * 240.00343 * 2 1 3 28 28 H 1.09000 * 109.47401 * 120.00430 * 2 1 3 29 29 H 0.97002 * 120.00606 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99831 * 37.84258 * 13 3 2 31 31 H 1.07997 * 119.98634 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.99217 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.00383 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.00787 * 0.02562 * 21 15 14 35 35 H 1.09003 * 117.49947 * 215.00354 * 22 14 13 36 36 H 1.09001 * 117.49954 * 0.02562 * 22 14 13 37 37 H 1.09001 * 117.49234 * 359.97438 * 23 14 13 38 38 H 1.09001 * 117.49846 * 144.99210 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1298 1.4427 0.0197 5 6 1.5157 2.1607 1.2167 6 1 0.8915 3.0344 1.1010 7 6 1.8327 1.7022 2.4778 8 7 1.1261 2.0921 3.5162 9 14 3.2660 0.5272 2.7115 10 1 4.5067 1.3036 2.9626 11 1 2.9944 -0.3605 3.8706 12 1 3.4361 -0.2956 1.4871 13 7 1.5720 2.1274 -1.2124 14 6 2.4902 1.8960 -2.3354 15 6 3.8855 2.4363 -2.1561 16 6 4.1783 3.2498 -1.0771 17 6 5.4580 3.7453 -0.9117 18 6 6.4458 3.4282 -1.8253 19 6 6.1532 2.6152 -2.9056 20 17 7.3933 2.2160 -4.0529 21 6 4.8735 2.1140 -3.0670 22 6 2.3331 0.5913 -3.1190 23 6 1.8999 1.9184 -3.7468 24 1 -0.3633 0.4111 -0.9417 25 1 -0.3633 -1.0212 0.1149 26 1 -0.3633 0.6100 0.8270 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3489 1.7693 4.4034 30 1 0.6331 1.8433 -1.4485 31 1 3.4069 3.4982 -0.3633 32 1 5.6862 4.3804 -0.0685 33 1 7.4455 3.8158 -1.6962 34 1 4.6457 1.4754 -3.9076 35 1 3.2391 0.1238 -3.5049 36 1 1.5482 -0.0951 -2.8016 37 1 0.8301 2.1045 -3.8419 38 1 2.5207 2.3241 -4.5456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:30 Heat of formation + Delta-G solvation = 49.147841 kcal Electronic energy + Delta-G solvation = -20069.726316 eV Core-core repulsion = 17131.803777 eV Total energy + Delta-G solvation = -2937.922540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.87471 -37.68072 -36.25637 -35.12956 -31.95485 -30.73690 -30.48039 -29.53868 -26.62635 -23.37399 -23.29120 -22.33946 -22.03024 -20.19200 -19.23869 -16.81887 -16.51672 -15.65311 -15.19302 -14.87232 -14.72064 -14.38904 -13.56969 -13.43021 -13.34597 -13.27767 -12.88526 -12.43126 -12.31863 -11.74798 -11.58259 -11.39282 -11.15597 -11.08729 -11.02604 -10.89570 -10.75044 -10.59297 -10.29526 -10.06697 -9.85529 -9.29577 -9.26678 -8.66432 -8.37164 -8.27580 -7.44823 -6.12671 -4.03294 1.39668 1.44195 2.20129 3.25024 3.34064 3.38720 3.70563 4.28596 4.39773 4.60891 4.80690 4.93648 5.08990 5.18203 5.23963 5.32919 5.57007 5.67716 5.76524 5.79973 5.96214 6.01030 6.04756 6.08792 6.14747 6.21007 6.26267 6.36923 6.59657 6.72117 6.78706 6.87304 6.94513 7.04705 7.11808 7.30264 7.69267 7.84680 8.23289 8.62561 9.03084 9.55065 11.00140 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.006335 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.193630 B = 4419.108908 C = 5241.992656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.160 4.160 3 C 0.189 3.811 4 H 0.035 0.965 5 C -0.503 4.503 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.849 3.151 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.253 1.253 13 N -0.634 5.634 14 C 0.099 3.901 15 C -0.020 4.020 16 C -0.081 4.081 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.040 4.040 20 Cl -0.086 7.086 21 C -0.115 4.115 22 C -0.217 4.217 23 C -0.167 4.167 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.263 0.737 30 H 0.341 0.659 31 H 0.160 0.840 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.962 -0.684 -13.045 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.081 3.919 4 H 0.053 0.947 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.122 4.122 8 N -0.526 5.526 9 Si 0.676 3.324 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.177 1.177 13 N -0.263 5.263 14 C 0.006 3.994 15 C -0.021 4.021 16 C -0.099 4.099 17 C -0.130 4.130 18 C -0.138 4.138 19 C -0.067 4.067 20 Cl -0.057 7.057 21 C -0.134 4.134 22 C -0.257 4.257 23 C -0.205 4.205 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.162 0.838 31 H 0.178 0.822 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.300 -0.110 -12.734 14.679 hybrid contribution 0.739 -1.788 -0.045 1.935 sum 8.039 -1.898 -12.779 15.216 Atomic orbital electron populations 1.21663 0.96339 0.99797 1.01814 1.22659 0.96524 1.00829 0.99908 1.19669 0.95619 0.88438 0.88221 0.94698 1.20796 1.31975 1.13652 0.87623 0.90124 1.24790 0.95785 0.95597 0.96060 1.69973 1.37538 1.45598 0.99507 0.87508 0.84570 0.82020 0.78304 1.20571 1.21499 1.17716 1.60420 1.03442 1.60878 1.01563 1.20158 0.91542 0.97528 0.90176 1.18836 0.92130 0.96661 0.94484 1.21694 0.97331 0.93914 0.96976 1.21226 0.92865 1.00138 0.98799 1.21003 1.00190 0.98733 0.93877 1.20696 0.89813 1.02392 0.93771 1.98337 1.53985 1.93230 1.60158 1.20761 0.91033 1.01152 1.00495 1.23788 1.03598 0.91858 1.06418 1.23202 1.01509 1.00656 0.95114 0.94706 0.95097 0.89972 0.94876 0.92167 0.92733 0.83832 0.82217 0.85028 0.85506 0.85464 0.89075 0.88372 0.88415 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.36 37.16 0.35 -2.31 16 2 C -0.16 -3.29 5.04 -26.73 -0.13 -3.43 16 3 C 0.19 4.08 0.82 -68.86 -0.06 4.02 16 4 H 0.04 0.80 4.74 -51.93 -0.25 0.55 16 5 C -0.50 -12.91 7.70 -34.44 -0.27 -13.18 16 6 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 7 C 0.08 2.17 5.32 -17.82 -0.09 2.07 16 8 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 9 Si 0.85 20.39 25.86 -169.99 -4.40 16.00 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.25 -5.79 5.28 56.52 0.30 -5.49 16 13 N -0.63 -11.93 5.76 -95.41 -0.55 -12.48 16 14 C 0.10 1.61 2.30 -132.76 -0.31 1.31 16 15 C -0.02 -0.33 5.18 -104.63 -0.54 -0.87 16 16 C -0.08 -1.42 8.03 -39.58 -0.32 -1.73 16 17 C -0.11 -1.69 10.05 -39.59 -0.40 -2.09 16 18 C -0.12 -1.65 9.83 -39.55 -0.39 -2.04 16 19 C -0.04 -0.57 6.32 -39.49 -0.25 -0.82 16 20 Cl -0.09 -1.07 28.96 -51.86 -1.50 -2.57 16 21 C -0.12 -1.69 8.60 -39.54 -0.34 -2.03 16 22 C -0.22 -3.07 8.61 -26.70 -0.23 -3.30 16 23 C -0.17 -2.22 9.67 -26.69 -0.26 -2.48 16 24 H 0.03 0.58 6.57 -51.93 -0.34 0.24 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.82 6.96 -51.93 -0.36 1.46 16 27 H 0.03 0.62 5.92 -51.93 -0.31 0.31 16 28 H 0.06 1.34 4.39 -51.93 -0.23 1.11 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.34 6.15 6.31 -39.29 -0.25 5.90 16 31 H 0.16 3.17 6.29 -52.49 -0.33 2.84 16 32 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.13 1.67 6.52 -52.49 -0.34 1.32 16 35 H 0.09 1.21 6.82 -51.93 -0.35 0.85 16 36 H 0.10 1.41 7.06 -51.93 -0.37 1.04 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.10 1.15 7.87 -51.93 -0.41 0.74 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -27.15 309.07 -9.13 -36.28 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.89 Total: 9.95 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -3.23 Total: -26.87 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.22 Total: -37.45 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.40 Total: 16.00 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.15 -9.13 -36.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.431 kcal (2) G-P(sol) polarization free energy of solvation -27.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds