Wall clock time and date at job start Fri Apr 10 2020 17:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46855 * 2 1 4 4 H 1.09002 * 109.47062 * 178.90213 * 3 2 1 5 5 C 1.50699 * 109.46987 * 58.90971 * 3 2 1 6 6 H 1.07998 * 120.00340 * 240.38399 * 5 3 2 7 7 C 1.37882 * 120.00101 * 60.37904 * 5 3 2 8 8 N 1.31508 * 120.00311 * 197.39044 * 7 5 3 9 9 Si 1.86807 * 119.99740 * 17.39874 * 7 5 3 10 10 H 1.48502 * 109.47207 * 90.43434 * 9 7 5 11 11 H 1.48498 * 109.46657 * 210.43555 * 9 7 5 12 12 H 1.48495 * 109.46784 * 330.43220 * 9 7 5 13 13 N 1.46898 * 109.47420 * 298.90878 * 3 2 1 14 14 C 1.46892 * 110.99944 * 273.88896 * 13 3 2 15 15 C 1.50697 * 115.54950 * 296.86172 * 14 13 3 16 16 C 1.38269 * 119.99381 * 351.35636 * 15 14 13 17 17 C 1.38220 * 120.02572 * 179.97438 * 16 15 14 18 18 C 1.38241 * 120.01518 * 0.02562 * 17 16 15 19 19 C 1.38329 * 119.98784 * 0.02562 * 18 17 16 20 20 Cl 1.73592 * 120.01398 * 180.02562 * 19 18 17 21 21 C 1.38196 * 119.99506 * 171.08567 * 15 14 13 22 22 C 1.53002 * 117.50164 * 82.53276 * 14 13 3 23 23 C 1.53005 * 117.50178 * 151.18959 * 14 13 3 24 24 H 1.08990 * 109.47295 * 66.41841 * 1 2 3 25 25 H 1.08997 * 109.46808 * 186.42081 * 1 2 3 26 26 H 1.08998 * 109.46826 * 306.41304 * 1 2 3 27 27 H 1.08999 * 109.46752 * 240.00343 * 2 1 3 28 28 H 1.09000 * 109.47401 * 120.00430 * 2 1 3 29 29 H 0.97002 * 120.00606 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99831 * 37.84258 * 13 3 2 31 31 H 1.07997 * 119.98634 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.99217 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.00383 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.00787 * 0.02562 * 21 15 14 35 35 H 1.09003 * 117.49947 * 215.00354 * 22 14 13 36 36 H 1.09001 * 117.49954 * 0.02562 * 22 14 13 37 37 H 1.09001 * 117.49234 * 359.97438 * 23 14 13 38 38 H 1.09001 * 117.49846 * 144.99210 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1298 1.4427 0.0197 5 6 1.5157 2.1607 1.2167 6 1 0.8915 3.0344 1.1010 7 6 1.8327 1.7022 2.4778 8 7 1.1261 2.0921 3.5162 9 14 3.2660 0.5272 2.7115 10 1 4.5067 1.3036 2.9626 11 1 2.9944 -0.3605 3.8706 12 1 3.4361 -0.2956 1.4871 13 7 1.5720 2.1274 -1.2124 14 6 2.4902 1.8960 -2.3354 15 6 3.8855 2.4363 -2.1561 16 6 4.1783 3.2498 -1.0771 17 6 5.4580 3.7453 -0.9117 18 6 6.4458 3.4282 -1.8253 19 6 6.1532 2.6152 -2.9056 20 17 7.3933 2.2160 -4.0529 21 6 4.8735 2.1140 -3.0670 22 6 2.3331 0.5913 -3.1190 23 6 1.8999 1.9184 -3.7468 24 1 -0.3633 0.4111 -0.9417 25 1 -0.3633 -1.0212 0.1149 26 1 -0.3633 0.6100 0.8270 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3489 1.7693 4.4034 30 1 0.6331 1.8433 -1.4485 31 1 3.4069 3.4982 -0.3633 32 1 5.6862 4.3804 -0.0685 33 1 7.4455 3.8158 -1.6962 34 1 4.6457 1.4754 -3.9076 35 1 3.2391 0.1238 -3.5049 36 1 1.5482 -0.0951 -2.8016 37 1 0.8301 2.1045 -3.8419 38 1 2.5207 2.3241 -4.5456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:29 Heat of formation + Delta-G solvation = 34.203249 kcal Electronic energy + Delta-G solvation = -20070.374363 eV Core-core repulsion = 17131.803777 eV Total energy + Delta-G solvation = -2938.570586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08524 -38.93492 -37.34298 -36.64826 -33.94929 -32.02845 -31.61532 -30.91390 -28.47536 -25.04866 -24.52723 -23.49585 -23.15864 -21.79544 -20.58149 -18.42659 -17.98567 -17.01764 -16.79207 -16.23502 -16.00849 -15.61231 -15.20950 -14.83507 -14.65217 -14.49195 -14.44203 -14.28437 -13.62057 -13.03078 -12.93386 -12.66484 -12.64773 -12.46891 -12.40747 -12.29618 -12.24534 -11.93154 -11.75349 -11.51052 -11.39726 -11.15550 -10.96286 -10.39570 -9.80022 -9.50133 -8.85415 -8.23924 -6.15656 0.23854 0.29825 1.12992 1.31216 1.38457 1.42895 2.37524 2.55574 3.06832 3.13821 3.39386 3.61865 3.79160 3.98908 4.15637 4.19926 4.39382 4.39994 4.44263 4.50959 4.59065 4.65497 4.75276 4.80522 4.98011 5.01849 5.02166 5.17055 5.22038 5.24209 5.26977 5.38437 5.52391 5.64026 5.67641 5.79163 5.89661 6.11141 6.73163 6.77754 6.88504 7.45556 8.92985 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.006335 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.193630 B = 4419.108908 C = 5241.992656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.159 4.159 3 C 0.201 3.799 4 H 0.028 0.972 5 C -0.488 4.488 6 H 0.038 0.962 7 C 0.030 3.970 8 N -0.938 5.938 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.231 1.231 13 N -0.644 5.644 14 C 0.069 3.931 15 C -0.030 4.030 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.041 4.041 20 Cl -0.067 7.067 21 C -0.114 4.114 22 C -0.206 4.206 23 C -0.146 4.146 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.261 0.739 30 H 0.343 0.657 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 -2.176 -15.897 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.199 4.199 3 C 0.092 3.908 4 H 0.046 0.954 5 C -0.526 4.526 6 H 0.056 0.944 7 C -0.168 4.168 8 N -0.579 5.579 9 Si 0.729 3.271 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.154 1.154 13 N -0.274 5.274 14 C -0.024 4.024 15 C -0.031 4.031 16 C -0.128 4.128 17 C -0.134 4.134 18 C -0.135 4.135 19 C -0.068 4.068 20 Cl -0.038 7.038 21 C -0.133 4.133 22 C -0.245 4.245 23 C -0.183 4.183 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.164 0.836 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.961 -1.606 -15.626 18.085 hybrid contribution 0.215 -1.230 0.736 1.449 sum 9.176 -2.836 -14.890 17.719 Atomic orbital electron populations 1.21554 0.95422 1.00504 1.01406 1.22601 0.97384 0.99678 1.00190 1.19344 0.94814 0.88833 0.87844 0.95433 1.20974 1.30056 1.12026 0.89543 0.94415 1.25439 0.97896 0.97614 0.95876 1.70104 1.39648 1.48132 0.99996 0.86624 0.81372 0.80341 0.78796 1.20705 1.21873 1.15400 1.60200 1.04128 1.61079 1.01965 1.20248 0.91340 1.00250 0.90549 1.18935 0.92816 0.96725 0.94645 1.21501 0.97603 0.96161 0.97565 1.21366 0.92383 1.00115 0.99584 1.21238 1.00846 0.98227 0.93222 1.20852 0.90204 1.01762 0.93980 1.98347 1.53049 1.93035 1.59353 1.20882 0.90729 1.01168 1.00486 1.23811 1.04158 0.91449 1.05105 1.23307 1.02254 0.99471 0.93256 0.92465 0.92970 0.93849 0.92324 0.93889 0.92944 0.83563 0.85750 0.84023 0.83075 0.83567 0.87671 0.88315 0.87534 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.36 71.98 0.67 -4.21 16 2 C -0.16 -6.33 5.04 30.60 0.15 -6.17 16 3 C 0.20 8.69 0.82 44.17 0.04 8.73 16 4 H 0.03 1.26 4.74 -2.39 -0.01 1.25 16 5 C -0.49 -26.12 7.70 25.60 0.20 -25.92 16 6 H 0.04 2.30 8.06 -2.91 -0.02 2.27 16 7 C 0.03 1.66 5.32 84.66 0.45 2.11 16 8 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 9 Si 0.90 42.80 25.86 68.60 1.77 44.57 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.23 -10.04 5.28 99.48 0.53 -9.51 16 13 N -0.64 -24.10 5.76 -455.79 -2.62 -26.72 16 14 C 0.07 2.11 2.30 2.78 0.01 2.11 16 15 C -0.03 -0.96 5.18 -19.87 -0.10 -1.06 16 16 C -0.11 -3.85 8.03 22.27 0.18 -3.68 16 17 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16 18 C -0.12 -2.96 9.83 22.29 0.22 -2.74 16 19 C -0.04 -1.05 6.32 22.33 0.14 -0.91 16 20 Cl -0.07 -1.44 28.96 -2.72 -0.08 -1.51 16 21 C -0.11 -3.01 8.60 22.29 0.19 -2.82 16 22 C -0.21 -5.08 8.61 30.62 0.26 -4.82 16 23 C -0.15 -3.38 9.67 30.62 0.30 -3.08 16 24 H 0.06 1.83 6.57 -2.39 -0.02 1.82 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.94 6.96 -2.39 -0.02 1.93 16 27 H 0.06 2.03 5.92 -2.39 -0.01 2.02 16 28 H 0.04 1.84 4.39 -2.39 -0.01 1.83 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.34 12.13 6.31 -89.69 -0.57 11.56 16 31 H 0.12 5.21 6.29 -2.91 -0.02 5.19 16 32 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.15 3.23 6.52 -2.91 -0.02 3.21 16 35 H 0.11 2.32 6.82 -2.39 -0.02 2.30 16 36 H 0.10 2.45 7.06 -2.39 -0.02 2.43 16 37 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.11 2.25 7.87 -2.39 -0.02 2.24 16 Total: -1.00 -60.84 309.07 2.64 -58.20 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.34 Total: 27.69 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 2.93 Total: -45.66 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.32 Total: -83.29 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.77 Total: 44.57 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.51 kcal Total: -60.84 2.64 -58.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.402 kcal (2) G-P(sol) polarization free energy of solvation -60.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds