Wall clock time and date at job start Fri Apr 10 2020 17:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47008 * 2 1 4 4 H 1.09000 * 109.47156 * 305.00008 * 3 2 1 5 5 C 1.50694 * 109.47278 * 185.00328 * 3 2 1 6 6 H 1.08007 * 119.99897 * 240.00046 * 5 3 2 7 7 C 1.37874 * 120.00477 * 59.99468 * 5 3 2 8 8 N 1.31514 * 119.99687 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00307 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47330 * 90.00010 * 9 7 5 11 11 H 1.48505 * 109.46996 * 210.00235 * 9 7 5 12 12 H 1.48503 * 109.47061 * 329.99953 * 9 7 5 13 13 N 1.46901 * 109.47251 * 64.99839 * 3 2 1 14 14 C 1.46899 * 111.00203 * 275.00069 * 13 3 2 15 15 H 1.09008 * 115.56083 * 9.29692 * 14 13 3 16 16 C 1.53000 * 117.50080 * 223.61000 * 14 13 3 17 17 C 1.53002 * 60.02940 * 252.49785 * 16 14 13 18 18 H 1.08999 * 117.49664 * 252.51862 * 17 16 14 19 19 C 1.50695 * 117.50044 * 107.50594 * 17 16 14 20 20 C 1.38241 * 119.98432 * 351.11051 * 19 17 16 21 21 C 1.38219 * 120.01167 * 179.73193 * 20 19 17 22 22 C 1.38347 * 119.98695 * 0.54824 * 21 20 19 23 23 Cl 1.73597 * 120.01543 * 179.74986 * 22 21 20 24 24 C 1.38357 * 119.97343 * 359.72781 * 22 21 20 25 25 C 1.38208 * 119.98421 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47108 * 299.99700 * 1 2 3 27 27 H 1.08998 * 109.47473 * 59.99948 * 1 2 3 28 28 H 1.09012 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46761 * 239.99677 * 2 1 3 30 30 H 1.08999 * 109.46733 * 120.00101 * 2 1 3 31 31 H 0.97002 * 119.99939 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00138 * 38.95247 * 13 3 2 33 33 H 1.09002 * 117.49833 * 359.97438 * 16 14 13 34 34 H 1.09002 * 117.49953 * 144.99931 * 16 14 13 35 35 H 1.08002 * 119.99366 * 0.02562 * 20 19 17 36 36 H 1.08001 * 120.00555 * 180.27186 * 21 20 19 37 37 H 1.07994 * 120.00475 * 180.02562 * 24 22 21 38 38 H 1.08007 * 119.99064 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8801 -1.3812 10 1 6.5539 -0.3518 -0.7598 11 1 6.3834 0.9215 -2.8166 12 1 6.5575 2.0722 -0.6890 13 7 1.6513 2.0993 1.2552 14 6 0.2912 2.6467 1.1638 15 1 -0.2731 2.3586 0.2767 16 6 0.0551 4.0498 1.7264 17 6 -0.4876 2.8271 2.4691 18 1 -1.5640 2.6577 2.4404 19 6 0.1991 2.4297 3.7502 20 6 1.3827 3.0418 4.1183 21 6 2.0102 2.6817 5.2960 22 6 1.4594 1.7004 6.1009 23 17 2.2503 1.2429 7.5770 24 6 0.2778 1.0841 5.7291 25 6 -0.3519 1.4494 4.5543 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0278 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0604 -2.9502 32 1 1.7342 1.4653 2.0358 33 1 0.9089 4.5665 2.1648 34 1 -0.6643 4.6849 1.2094 35 1 1.8147 3.8049 3.4879 36 1 2.9325 3.1630 5.5857 37 1 -0.1528 0.3183 6.3572 38 1 -1.2745 0.9687 4.2642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:38 Heat of formation + Delta-G solvation = 23.751534 kcal Electronic energy + Delta-G solvation = -19496.269589 eV Core-core repulsion = 16557.245783 eV Total energy + Delta-G solvation = -2939.023806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81313 -38.85633 -37.39536 -36.43546 -33.88872 -32.00534 -31.54201 -30.89957 -28.28079 -24.77721 -24.72961 -23.70448 -21.89998 -21.66767 -21.01212 -18.43968 -18.10788 -17.08542 -16.57575 -16.33914 -15.74484 -15.49616 -15.13789 -14.97997 -14.49091 -14.39613 -14.31770 -13.85396 -13.30813 -13.11908 -12.87566 -12.69048 -12.55035 -12.53118 -12.36631 -12.15446 -11.97482 -11.95988 -11.73313 -11.58723 -11.44652 -11.14606 -10.81934 -10.41887 -9.91493 -9.35701 -8.72347 -8.07012 -6.17172 0.19068 0.41901 1.20210 1.42040 1.43332 1.53472 2.44622 2.58688 3.20438 3.24122 3.49485 3.79196 3.91493 4.01532 4.13759 4.33390 4.42346 4.46304 4.51676 4.59291 4.63197 4.71429 4.82086 4.88158 4.99396 5.07648 5.11697 5.23391 5.25944 5.35832 5.40138 5.41998 5.60317 5.72221 5.75803 5.88937 5.92368 6.35058 6.70135 6.87525 6.98477 7.52209 8.97456 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.005033 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.814943 B = 5561.989182 C = 6465.608264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.143 4.143 3 C 0.228 3.772 4 H 0.004 0.996 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.649 5.649 14 C 0.022 3.978 15 H 0.095 0.905 16 C -0.165 4.165 17 C -0.123 4.123 18 H 0.132 0.868 19 C -0.049 4.049 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.049 4.049 23 Cl -0.077 7.077 24 C -0.114 4.114 25 C -0.105 4.105 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.264 3.076 14.477 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.120 3.880 4 H 0.022 0.978 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.279 5.279 14 C -0.089 4.089 15 H 0.112 0.888 16 C -0.203 4.203 17 C -0.143 4.143 18 H 0.150 0.850 19 C -0.049 4.049 20 C -0.116 4.116 21 C -0.137 4.137 22 C -0.076 4.076 23 Cl -0.048 7.048 24 C -0.133 4.133 25 C -0.123 4.123 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.842 3.540 14.274 17.160 hybrid contribution 0.810 -0.975 -0.321 1.308 sum -8.033 2.565 13.953 16.303 Atomic orbital electron populations 1.21889 0.96283 1.00743 1.00851 1.22089 0.94604 1.00891 1.00723 1.18929 0.93700 0.88906 0.86486 0.97795 1.21464 0.92856 1.35999 1.04933 0.93118 1.25619 1.02084 0.95300 0.95601 1.69996 1.36180 1.39789 1.09944 0.85629 0.81053 0.78347 0.76999 1.20417 1.20978 1.19674 1.60428 1.20712 1.40720 1.06035 1.22695 0.90629 0.99993 0.95568 0.88776 1.23372 1.02905 0.91011 1.02981 1.21533 0.99178 1.04118 0.89428 0.85002 1.19297 0.94868 0.96045 0.94740 1.21170 0.94915 1.00186 0.95369 1.21169 1.00755 0.97300 0.94462 1.21042 0.96334 1.00018 0.90179 1.98351 1.80236 1.91871 1.34384 1.21209 0.93971 1.00397 0.97701 1.21163 1.00996 0.96624 0.93493 0.91848 0.94152 0.93292 0.91652 0.95571 0.93134 0.85153 0.88799 0.87053 0.85094 0.84542 0.83324 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 8.58 71.98 0.62 -4.55 16 2 C -0.14 -6.65 5.24 30.59 0.16 -6.49 16 3 C 0.23 11.21 2.16 44.17 0.10 11.31 16 4 H 0.00 0.23 7.73 -2.39 -0.02 0.21 16 5 C -0.51 -28.39 8.84 25.60 0.23 -28.16 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 7 C 0.01 0.67 5.29 84.65 0.45 1.12 16 8 N -0.92 -52.60 11.29 21.45 0.24 -52.36 16 9 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.65 -26.12 5.79 -473.20 -2.74 -28.86 16 14 C 0.02 0.72 3.99 44.94 0.18 0.90 16 15 H 0.09 3.18 6.08 -2.38 -0.01 3.17 16 16 C -0.16 -4.37 9.78 30.60 0.30 -4.07 16 17 C -0.12 -3.05 6.02 -11.52 -0.07 -3.12 16 18 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 19 C -0.05 -1.24 4.63 -19.86 -0.09 -1.33 16 20 C -0.10 -2.65 8.23 22.27 0.18 -2.47 16 21 C -0.12 -3.02 9.83 22.29 0.22 -2.80 16 22 C -0.05 -1.19 6.32 22.32 0.14 -1.05 16 23 Cl -0.08 -1.73 28.96 -2.72 -0.08 -1.81 16 24 C -0.11 -2.49 9.83 22.29 0.22 -2.27 16 25 C -0.10 -2.30 9.74 22.26 0.22 -2.08 16 26 H 0.06 2.06 5.76 -2.39 -0.01 2.04 16 27 H 0.04 1.50 7.92 -2.39 -0.02 1.48 16 28 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 3.49 5.95 -2.39 -0.01 3.48 16 30 H 0.03 1.20 8.04 -2.39 -0.02 1.18 16 31 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.33 13.12 6.83 -89.69 -0.61 12.51 16 33 H 0.09 2.62 6.18 -2.39 -0.01 2.61 16 34 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.13 3.71 6.03 -2.91 -0.02 3.69 16 36 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -58.92 320.62 2.75 -56.17 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.46 Total: 25.66 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 2.84 Total: -45.07 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -2.50 Total: -81.22 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -58.92 2.75 -56.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.918 kcal (2) G-P(sol) polarization free energy of solvation -58.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds