Wall clock time and date at job start Fri Apr 10 2020 17:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46870 * 2 1 4 4 H 1.09001 * 109.47565 * 182.05015 * 3 2 1 5 5 C 1.50702 * 109.46631 * 62.05242 * 3 2 1 6 6 H 1.08007 * 120.00098 * 239.99629 * 5 3 2 7 7 C 1.37873 * 120.00459 * 60.00373 * 5 3 2 8 8 N 1.31520 * 119.99816 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00406 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47505 * 119.99434 * 9 7 5 12 12 H 1.48504 * 109.47182 * 239.99789 * 9 7 5 13 13 N 1.46897 * 109.47338 * 302.05224 * 3 2 1 14 14 C 1.47163 * 111.00062 * 179.21995 * 13 3 2 15 15 C 1.52894 * 108.66307 * 52.08895 * 14 13 3 16 16 C 1.51166 * 109.70817 * 50.38436 * 15 14 13 17 17 C 1.38689 * 118.39967 * 163.29466 * 16 15 14 18 18 C 1.38039 * 120.37650 * 179.65142 * 17 16 15 19 19 C 1.38239 * 119.84120 * 359.97438 * 18 17 16 20 20 C 1.38134 * 119.85092 * 0.09872 * 19 18 17 21 21 Cl 1.73608 * 119.81922 * 180.02562 * 20 19 18 22 22 C 1.37805 * 121.73973 * 343.11278 * 16 15 14 23 23 C 1.46626 * 111.00037 * 302.23011 * 13 3 2 24 24 H 1.09000 * 109.46873 * 304.76913 * 1 2 3 25 25 H 1.08999 * 109.47432 * 64.77765 * 1 2 3 26 26 H 1.09008 * 109.46766 * 184.77995 * 1 2 3 27 27 H 1.09004 * 109.47006 * 240.00883 * 2 1 3 28 28 H 1.08993 * 109.47734 * 120.00004 * 2 1 3 29 29 H 0.96997 * 120.00279 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.63178 * 171.88575 * 14 13 3 31 31 H 1.08999 * 109.63755 * 292.27995 * 14 13 3 32 32 H 1.09000 * 109.39323 * 170.69770 * 15 14 13 33 33 H 1.09001 * 109.38754 * 290.40420 * 15 14 13 34 34 H 1.08007 * 119.80959 * 359.66893 * 17 16 15 35 35 H 1.07997 * 120.07907 * 180.02562 * 18 17 16 36 36 H 1.07991 * 120.07123 * 180.11761 * 19 18 17 37 37 H 1.08995 * 109.26976 * 49.30944 * 23 13 3 38 38 H 1.09001 * 109.27142 * 168.81186 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4429 -0.0368 5 6 1.5795 2.1380 1.2552 6 1 0.9557 3.0171 1.1876 7 6 1.9546 1.6522 2.4897 8 7 2.7138 0.5814 2.5721 9 14 1.3844 2.5146 4.0455 10 1 0.5472 3.6865 3.6834 11 1 0.5868 1.5719 4.8702 12 1 2.5664 2.9716 4.8197 13 7 1.5102 2.1492 -1.1738 14 6 1.9659 3.5483 -1.1972 15 6 3.4876 3.5698 -1.0506 16 6 4.1092 2.6180 -2.0470 17 6 5.4627 2.7427 -2.3225 18 6 6.0737 1.8906 -3.2203 19 6 5.3330 0.9068 -3.8483 20 6 3.9845 0.7823 -3.5761 21 17 3.0551 -0.4540 -4.3648 22 6 3.3684 1.6404 -2.6752 23 6 1.8948 1.4690 -2.4145 24 1 -0.3633 0.5861 0.8442 25 1 -0.3634 0.4379 -0.9297 26 1 -0.3633 -1.0242 0.0856 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.9775 0.2394 3.4406 30 1 1.6826 4.0100 -2.1431 31 1 1.5106 4.0957 -0.3718 32 1 3.8544 4.5802 -1.2310 33 1 3.7582 3.2631 -0.0402 34 1 6.0420 3.5108 -1.8316 35 1 7.1281 1.9918 -3.4309 36 1 5.8077 0.2369 -4.5499 37 1 1.6659 0.4069 -2.3283 38 1 1.3313 1.8919 -3.2462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:55 Heat of formation + Delta-G solvation = 5.638943 kcal Electronic energy + Delta-G solvation = -20546.555227 eV Core-core repulsion = 17606.746000 eV Total energy + Delta-G solvation = -2939.809227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43468 -38.69319 -37.39938 -35.42904 -33.72623 -32.72564 -31.67681 -29.82692 -28.52840 -25.81077 -25.15823 -23.81973 -23.11184 -21.91309 -19.78003 -17.87050 -17.78888 -17.06048 -16.61852 -16.40721 -15.90737 -15.83586 -15.05099 -14.71308 -14.56449 -14.34903 -14.02328 -13.72279 -13.43904 -13.27982 -12.92155 -12.77935 -12.69836 -12.53922 -12.42641 -12.24212 -12.09408 -11.84003 -11.79063 -11.55079 -11.39102 -11.25289 -10.69417 -10.40320 -9.54977 -9.54331 -8.84766 -8.02800 -6.11557 0.21601 0.34211 1.18748 1.41719 1.45727 1.55165 2.46307 2.66343 3.25781 3.44322 3.74369 3.86153 4.04547 4.26008 4.31840 4.38680 4.52490 4.53900 4.66088 4.68844 4.75644 4.84603 4.89157 4.94568 5.00566 5.14656 5.23744 5.30243 5.31965 5.41156 5.54657 5.58138 5.63806 5.78527 5.82418 5.90733 5.92855 6.36793 6.46784 6.78896 7.02250 7.55801 9.02613 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.006573 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.299290 B = 4259.008346 C = 4810.855227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C 0.227 3.773 4 H -0.023 1.023 5 C -0.495 4.495 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.526 5.526 14 C 0.064 3.936 15 C -0.109 4.109 16 C -0.074 4.074 17 C -0.124 4.124 18 C -0.108 4.108 19 C -0.122 4.122 20 C -0.045 4.045 21 Cl -0.072 7.072 22 C -0.115 4.115 23 C 0.086 3.914 24 H 0.039 0.961 25 H 0.051 0.949 26 H 0.032 0.968 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.257 0.743 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.082 0.918 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 3.114 -12.408 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.150 4.150 3 C 0.121 3.879 4 H -0.005 1.005 5 C -0.534 4.534 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.773 3.227 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.247 5.247 14 C -0.064 4.064 15 C -0.147 4.147 16 C -0.074 4.074 17 C -0.142 4.142 18 C -0.126 4.126 19 C -0.140 4.140 20 C -0.072 4.072 21 Cl -0.043 7.043 22 C -0.117 4.117 23 C -0.043 4.043 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.100 0.900 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.998 2.895 -12.293 13.247 hybrid contribution 0.632 -0.083 1.080 1.254 sum 4.629 2.812 -11.213 12.453 Atomic orbital electron populations 1.21343 0.95826 0.98459 1.01060 1.21498 0.96329 0.98362 0.98789 1.19009 0.91287 0.90627 0.87009 1.00507 1.21286 1.30034 1.11503 0.90591 0.92491 1.25548 0.95536 0.95671 1.01516 1.70032 1.37604 1.23789 1.24520 0.85677 0.77894 0.78792 0.80296 1.19052 1.21286 1.21173 1.62676 1.57955 1.02347 1.01737 1.22040 0.92135 0.90629 1.01634 1.21088 0.98037 0.98351 0.97200 1.19893 0.94626 0.96158 0.96740 1.21487 0.93579 1.00646 0.98494 1.21364 1.01191 0.94164 0.95894 1.21258 0.91322 0.99990 1.01478 1.21040 0.93282 0.93758 0.99158 1.98332 1.74038 1.52994 1.78960 1.20457 0.99019 0.95523 0.96710 1.21259 0.88697 1.00730 0.93577 0.94178 0.92954 0.94923 0.96222 0.92135 0.93385 0.90508 0.90865 0.88636 0.91885 0.83948 0.81959 0.83014 0.89954 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.52 71.98 0.69 -4.12 16 2 C -0.11 -5.41 5.03 30.59 0.15 -5.26 16 3 C 0.23 11.02 1.05 44.17 0.05 11.07 16 4 H -0.02 -1.23 5.57 -2.39 -0.01 -1.24 16 5 C -0.50 -25.87 6.49 25.60 0.17 -25.71 16 6 H 0.06 2.98 6.65 -2.91 -0.02 2.96 16 7 C 0.02 0.83 5.30 84.65 0.45 1.28 16 8 N -0.92 -52.20 11.30 21.45 0.24 -51.95 16 9 Si 0.95 43.06 29.54 68.60 2.03 45.08 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.53 -21.60 4.11 -880.32 -3.62 -25.23 16 14 C 0.06 2.32 5.56 86.22 0.48 2.80 16 15 C -0.11 -3.79 5.19 29.96 0.16 -3.63 16 16 C -0.07 -2.50 5.07 -19.71 -0.10 -2.60 16 17 C -0.12 -3.47 9.66 22.33 0.22 -3.26 16 18 C -0.11 -2.59 10.05 22.22 0.22 -2.36 16 19 C -0.12 -3.15 9.82 22.25 0.22 -2.93 16 20 C -0.05 -1.41 6.31 22.39 0.14 -1.27 16 21 Cl -0.07 -2.07 27.36 -2.72 -0.07 -2.14 16 22 C -0.11 -4.01 5.31 -19.85 -0.11 -4.11 16 23 C 0.09 3.14 4.65 85.58 0.40 3.54 16 24 H 0.04 1.89 7.12 -2.39 -0.02 1.87 16 25 H 0.05 2.13 7.68 -2.39 -0.02 2.11 16 26 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.02 0.90 6.26 -2.39 -0.01 0.89 16 28 H 0.06 3.34 6.02 -2.39 -0.01 3.33 16 29 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.08 2.41 8.05 -2.38 -0.02 2.39 16 31 H 0.07 2.81 6.72 -2.39 -0.02 2.80 16 32 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 2.68 6.63 -2.39 -0.02 2.66 16 34 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.15 3.07 8.06 -2.92 -0.02 3.05 16 37 H 0.08 3.18 4.90 -2.39 -0.01 3.17 16 38 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -59.03 305.14 2.76 -56.27 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.06 Total: 14.52 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 3.13 Total: -36.56 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -3.38 Total: -77.18 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.07 Total: -2.14 kcal Total: -59.03 2.76 -56.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.910 kcal (2) G-P(sol) polarization free energy of solvation -59.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds