Wall clock time and date at job start Fri Apr 10 2020 17:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46794 * 2 1 4 4 H 1.09003 * 109.47288 * 305.64778 * 3 2 1 5 5 C 1.50695 * 109.47296 * 65.65154 * 3 2 1 6 6 H 1.07998 * 120.00049 * 84.59810 * 5 3 2 7 7 C 1.37872 * 119.99942 * 264.59386 * 5 3 2 8 8 N 1.31520 * 120.00061 * 357.98722 * 7 5 3 9 9 Si 1.86801 * 119.99980 * 177.98927 * 7 5 3 10 10 H 1.48501 * 109.47275 * 60.00156 * 9 7 5 11 11 H 1.48500 * 109.47160 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47133 * 299.99849 * 9 7 5 13 13 N 1.46906 * 109.47019 * 185.65227 * 3 2 1 14 14 C 1.47172 * 110.99978 * 63.16728 * 13 3 2 15 15 C 1.52894 * 108.50414 * 165.30417 * 14 13 3 16 16 C 1.50717 * 109.96649 * 50.33740 * 15 14 13 17 17 C 1.38684 * 118.48305 * 163.29308 * 16 15 14 18 18 C 1.37211 * 120.57587 * 179.32336 * 17 16 15 19 19 C 1.38241 * 119.77144 * 0.49626 * 18 17 16 20 20 C 1.38135 * 119.85262 * 359.72811 * 19 18 17 21 21 Cl 1.73601 * 119.82398 * 179.97438 * 20 19 18 22 22 C 1.37523 * 121.58872 * 343.06574 * 16 15 14 23 23 C 1.46638 * 110.99905 * 300.20366 * 13 3 2 24 24 H 1.08999 * 109.46920 * 295.85459 * 1 2 3 25 25 H 1.09002 * 109.47293 * 55.85951 * 1 2 3 26 26 H 1.09001 * 109.46696 * 175.85669 * 1 2 3 27 27 H 1.09004 * 109.47631 * 240.00047 * 2 1 3 28 28 H 1.08998 * 109.47557 * 119.99805 * 2 1 3 29 29 H 0.97006 * 119.99747 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.63444 * 285.00869 * 14 13 3 31 31 H 1.08995 * 109.62703 * 45.40314 * 14 13 3 32 32 H 1.09005 * 109.38334 * 170.48677 * 15 14 13 33 33 H 1.08997 * 109.39052 * 290.18143 * 15 14 13 34 34 H 1.08002 * 119.81314 * 359.78730 * 17 16 15 35 35 H 1.07999 * 120.14966 * 180.14301 * 18 17 16 36 36 H 1.08000 * 120.07440 * 179.74952 * 19 18 17 37 37 H 1.09000 * 109.30035 * 296.26113 * 23 13 3 38 38 H 1.08999 * 109.30079 * 55.84326 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5963 1.9848 -0.8351 5 6 1.6551 2.1114 1.2944 6 1 2.2779 1.9941 2.1688 7 6 0.5079 2.8732 1.3622 8 7 -0.2295 3.0486 0.2874 9 14 0.0010 3.6561 2.9807 10 1 1.0709 4.5770 3.4417 11 1 -1.2595 4.4175 2.7890 12 1 -0.2118 2.5957 3.9984 13 7 3.5026 1.4449 -0.1364 14 6 3.9130 0.8661 -1.4258 15 6 5.3790 1.2228 -1.6732 16 6 6.2050 0.8743 -0.4617 17 6 7.5820 0.7888 -0.6024 18 6 8.3764 0.4881 0.4752 19 6 7.7995 0.2581 1.7103 20 6 6.4280 0.3376 1.8541 21 17 5.7043 0.0479 3.4053 22 6 5.6252 0.6474 0.7645 23 6 4.1347 0.7185 0.9696 24 1 -0.3633 0.4482 0.9248 25 1 -0.3634 0.5768 -0.8506 26 1 -0.3633 -1.0250 -0.0743 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 -1.0369 3.5843 0.3353 30 1 3.8003 -0.2176 -1.3933 31 1 3.2938 1.2749 -2.2243 32 1 5.7467 0.6650 -2.5346 33 1 5.4627 2.2910 -1.8732 34 1 8.0355 0.9676 -1.5662 35 1 9.4482 0.4256 0.3584 36 1 8.4198 0.0170 2.5609 37 1 3.9241 1.2344 1.9064 38 1 3.7286 -0.2920 1.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:58 Heat of formation + Delta-G solvation = 14.088099 kcal Electronic energy + Delta-G solvation = -20052.427959 eV Core-core repulsion = 17112.985115 eV Total energy + Delta-G solvation = -2939.442844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93603 -37.34168 -36.24393 -33.96093 -32.08179 -31.47309 -30.29632 -28.89552 -26.38954 -24.63900 -23.01377 -22.48098 -21.93200 -20.29798 -18.41093 -16.77480 -16.26872 -15.54862 -15.23435 -14.61029 -14.48258 -14.02193 -13.72901 -13.49797 -13.36414 -12.78978 -12.66688 -12.21353 -12.06533 -11.94136 -11.53529 -11.33009 -11.04612 -10.91690 -10.86303 -10.71620 -10.54488 -10.48109 -10.31799 -10.09596 -9.78813 -9.38554 -8.87155 -8.47798 -8.42087 -8.38410 -7.14113 -6.01403 -4.02776 1.32273 1.46963 2.38229 3.33747 3.38051 3.41968 3.77671 4.42898 4.79568 4.88913 4.93778 5.12569 5.36364 5.41838 5.43942 5.56776 5.73371 5.88491 5.95659 6.07455 6.18408 6.23178 6.30881 6.34035 6.40978 6.45226 6.47290 6.60321 6.65392 6.82684 6.94451 7.01117 7.19924 7.24657 7.51335 7.62895 7.84011 8.04739 8.34973 8.58446 9.03377 9.60079 11.07094 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.006236 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.141364 B = 4488.735361 C = 5253.912540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.141 4.141 3 C 0.202 3.798 4 H 0.074 0.926 5 C -0.499 4.499 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.888 5.888 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.521 5.521 14 C 0.046 3.954 15 C -0.075 4.075 16 C -0.056 4.056 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.035 4.035 21 Cl -0.071 7.071 22 C -0.055 4.055 23 C 0.092 3.908 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.013 0.987 27 H 0.022 0.978 28 H 0.040 0.960 29 H 0.261 0.739 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.062 -5.998 -1.528 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.181 4.181 3 C 0.097 3.903 4 H 0.092 0.908 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.526 5.526 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.244 5.244 14 C -0.083 4.083 15 C -0.112 4.112 16 C -0.056 4.056 17 C -0.138 4.138 18 C -0.138 4.138 19 C -0.139 4.139 20 C -0.063 4.063 21 Cl -0.042 7.042 22 C -0.056 4.056 23 C -0.036 4.036 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.119 0.881 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.965 -5.414 -1.441 14.124 hybrid contribution -0.562 -0.435 1.081 1.294 sum 12.404 -5.849 -0.360 13.718 Atomic orbital electron populations 1.21395 0.95624 0.97020 1.03449 1.22251 0.97194 1.01062 0.97608 1.19677 0.79982 0.90935 0.99716 0.90761 1.20935 1.07184 1.30208 0.95376 0.92562 1.24860 0.96679 0.95549 0.96134 1.69914 1.15378 1.39800 1.27530 0.86725 0.77843 0.79561 0.84292 1.20205 1.21352 1.20337 1.62947 1.11946 1.50513 0.98960 1.22121 0.94438 0.96950 0.94807 1.20591 0.94733 1.02110 0.93804 1.19560 0.93498 0.97942 0.94641 1.20962 0.93163 1.00602 0.99088 1.20718 0.99676 1.01066 0.92344 1.20887 0.92540 1.02034 0.98404 1.20924 0.93065 1.05360 0.86901 1.98359 1.83814 1.94371 1.27688 1.19812 0.97165 0.97276 0.91330 1.21014 0.86885 0.97574 0.98131 0.91854 0.92816 0.96820 0.95895 0.94130 0.92924 0.95406 0.90668 0.91107 0.89781 0.85961 0.85662 0.85487 0.88115 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 8.82 37.16 0.33 -2.27 16 2 C -0.14 -3.11 4.65 -26.73 -0.12 -3.23 16 3 C 0.20 4.85 1.97 -68.86 -0.14 4.71 16 4 H 0.07 2.00 7.16 -51.93 -0.37 1.63 16 5 C -0.50 -13.15 7.53 -34.44 -0.26 -13.41 16 6 H 0.06 1.50 6.11 -52.49 -0.32 1.18 16 7 C 0.07 1.88 4.44 -17.82 -0.08 1.80 16 8 N -0.89 -24.39 11.87 55.43 0.66 -23.73 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.52 -11.07 4.68 -229.58 -1.07 -12.15 16 14 C 0.05 0.81 4.81 -3.73 -0.02 0.79 16 15 C -0.08 -1.11 5.94 -27.93 -0.17 -1.28 16 16 C -0.06 -0.87 5.76 -104.71 -0.60 -1.47 16 17 C -0.12 -1.53 9.61 -39.79 -0.38 -1.92 16 18 C -0.12 -1.42 10.02 -39.95 -0.40 -1.82 16 19 C -0.12 -1.58 9.82 -39.62 -0.39 -1.97 16 20 C -0.04 -0.56 6.31 -39.40 -0.25 -0.81 16 21 Cl -0.07 -1.11 27.36 -51.86 -1.42 -2.53 16 22 C -0.05 -0.95 5.78 -104.70 -0.61 -1.56 16 23 C 0.09 1.83 3.95 -5.16 -0.02 1.81 16 24 H 0.06 1.54 6.75 -51.93 -0.35 1.19 16 25 H 0.05 1.25 8.07 -51.93 -0.42 0.83 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.02 0.46 6.56 -51.93 -0.34 0.12 16 28 H 0.04 0.89 6.62 -51.93 -0.34 0.55 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.03 0.49 7.00 -51.93 -0.36 0.13 16 31 H 0.07 1.32 7.95 -51.93 -0.41 0.91 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.10 2.20 5.49 -51.93 -0.29 1.91 16 38 H 0.05 0.95 6.19 -51.93 -0.32 0.62 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -27.34 308.98 -10.50 -37.85 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.20 Total: 0.44 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -3.10 Total: -20.64 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.42 Total: -35.88 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.42 Total: -2.53 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.34 -10.50 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.933 kcal (2) G-P(sol) polarization free energy of solvation -27.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds