Wall clock time and date at job start Fri Apr 10 2020 17:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46794 * 2 1 4 4 H 1.09003 * 109.47288 * 305.64778 * 3 2 1 5 5 C 1.50695 * 109.47296 * 65.65154 * 3 2 1 6 6 H 1.07998 * 120.00049 * 84.59810 * 5 3 2 7 7 C 1.37872 * 119.99942 * 264.59386 * 5 3 2 8 8 N 1.31520 * 120.00061 * 357.98722 * 7 5 3 9 9 Si 1.86801 * 119.99980 * 177.98927 * 7 5 3 10 10 H 1.48501 * 109.47275 * 60.00156 * 9 7 5 11 11 H 1.48500 * 109.47160 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47133 * 299.99849 * 9 7 5 13 13 N 1.46906 * 109.47019 * 185.65227 * 3 2 1 14 14 C 1.47172 * 110.99978 * 63.16728 * 13 3 2 15 15 C 1.52894 * 108.50414 * 165.30417 * 14 13 3 16 16 C 1.50717 * 109.96649 * 50.33740 * 15 14 13 17 17 C 1.38684 * 118.48305 * 163.29308 * 16 15 14 18 18 C 1.37211 * 120.57587 * 179.32336 * 17 16 15 19 19 C 1.38241 * 119.77144 * 0.49626 * 18 17 16 20 20 C 1.38135 * 119.85262 * 359.72811 * 19 18 17 21 21 Cl 1.73601 * 119.82398 * 179.97438 * 20 19 18 22 22 C 1.37523 * 121.58872 * 343.06574 * 16 15 14 23 23 C 1.46638 * 110.99905 * 300.20366 * 13 3 2 24 24 H 1.08999 * 109.46920 * 295.85459 * 1 2 3 25 25 H 1.09002 * 109.47293 * 55.85951 * 1 2 3 26 26 H 1.09001 * 109.46696 * 175.85669 * 1 2 3 27 27 H 1.09004 * 109.47631 * 240.00047 * 2 1 3 28 28 H 1.08998 * 109.47557 * 119.99805 * 2 1 3 29 29 H 0.97006 * 119.99747 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.63444 * 285.00869 * 14 13 3 31 31 H 1.08995 * 109.62703 * 45.40314 * 14 13 3 32 32 H 1.09005 * 109.38334 * 170.48677 * 15 14 13 33 33 H 1.08997 * 109.39052 * 290.18143 * 15 14 13 34 34 H 1.08002 * 119.81314 * 359.78730 * 17 16 15 35 35 H 1.07999 * 120.14966 * 180.14301 * 18 17 16 36 36 H 1.08000 * 120.07440 * 179.74952 * 19 18 17 37 37 H 1.09000 * 109.30035 * 296.26113 * 23 13 3 38 38 H 1.08999 * 109.30079 * 55.84326 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5963 1.9848 -0.8351 5 6 1.6551 2.1114 1.2944 6 1 2.2779 1.9941 2.1688 7 6 0.5079 2.8732 1.3622 8 7 -0.2295 3.0486 0.2874 9 14 0.0010 3.6561 2.9807 10 1 1.0709 4.5770 3.4417 11 1 -1.2595 4.4175 2.7890 12 1 -0.2118 2.5957 3.9984 13 7 3.5026 1.4449 -0.1364 14 6 3.9130 0.8661 -1.4258 15 6 5.3790 1.2228 -1.6732 16 6 6.2050 0.8743 -0.4617 17 6 7.5820 0.7888 -0.6024 18 6 8.3764 0.4881 0.4752 19 6 7.7995 0.2581 1.7103 20 6 6.4280 0.3376 1.8541 21 17 5.7043 0.0479 3.4053 22 6 5.6252 0.6474 0.7645 23 6 4.1347 0.7185 0.9696 24 1 -0.3633 0.4482 0.9248 25 1 -0.3634 0.5768 -0.8506 26 1 -0.3633 -1.0250 -0.0743 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 -1.0369 3.5843 0.3353 30 1 3.8003 -0.2176 -1.3933 31 1 3.2938 1.2749 -2.2243 32 1 5.7467 0.6650 -2.5346 33 1 5.4627 2.2910 -1.8732 34 1 8.0355 0.9676 -1.5662 35 1 9.4482 0.4256 0.3584 36 1 8.4198 0.0170 2.5609 37 1 3.9241 1.2344 1.9064 38 1 3.7286 -0.2920 1.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:57 Heat of formation + Delta-G solvation = -0.297907 kcal Electronic energy + Delta-G solvation = -20053.051783 eV Core-core repulsion = 17112.985115 eV Total energy + Delta-G solvation = -2940.066668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17130 -38.83820 -37.42977 -35.58036 -33.63335 -33.02938 -31.77733 -30.15229 -28.20409 -26.22724 -24.47373 -24.09023 -23.06262 -21.88712 -19.91773 -18.43541 -17.69250 -16.96210 -16.55693 -16.27873 -15.71112 -15.55960 -15.28420 -15.22053 -14.56976 -14.33186 -13.96269 -13.90805 -13.42474 -13.21864 -13.14506 -12.78473 -12.75081 -12.64928 -12.31078 -12.22234 -12.15311 -11.99013 -11.90743 -11.55639 -11.53267 -11.16505 -10.82892 -10.48610 -9.60753 -9.50986 -8.79990 -8.07623 -6.13515 0.24815 0.37523 1.23034 1.40969 1.42033 1.48800 2.44285 2.70623 3.11371 3.49282 3.74801 3.83502 4.05948 4.26749 4.30403 4.41341 4.45233 4.51095 4.55501 4.66966 4.68437 4.79397 4.86407 4.88567 4.96042 5.05241 5.12820 5.22520 5.30219 5.34770 5.42071 5.48951 5.64555 5.66956 5.74699 5.79760 5.95956 6.14601 6.58952 6.77726 6.96844 7.51408 8.99950 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.006236 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.141364 B = 4488.735361 C = 5253.912540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.132 4.132 3 C 0.209 3.791 4 H 0.041 0.959 5 C -0.510 4.510 6 H 0.045 0.955 7 C 0.030 3.970 8 N -0.910 5.910 9 Si 0.938 3.062 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.275 1.275 13 N -0.538 5.538 14 C 0.044 3.956 15 C -0.068 4.068 16 C -0.071 4.071 17 C -0.113 4.113 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.052 4.052 21 Cl -0.083 7.083 22 C -0.088 4.088 23 C 0.107 3.893 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.260 0.740 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.071 0.929 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.815 -6.663 -2.214 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.172 4.172 3 C 0.103 3.897 4 H 0.059 0.941 5 C -0.548 4.548 6 H 0.063 0.937 7 C -0.170 4.170 8 N -0.549 5.549 9 Si 0.765 3.235 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.200 1.200 13 N -0.261 5.261 14 C -0.084 4.084 15 C -0.105 4.105 16 C -0.071 4.071 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.137 4.137 20 C -0.079 4.079 21 Cl -0.054 7.054 22 C -0.089 4.089 23 C -0.021 4.021 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.175 0.825 35 H 0.185 0.815 36 H 0.168 0.832 37 H 0.089 0.911 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 15.730 -6.085 -2.126 17.000 hybrid contribution -1.305 -0.252 1.260 1.831 sum 14.425 -6.337 -0.867 15.779 Atomic orbital electron populations 1.21270 0.95689 0.98234 1.01300 1.22101 0.96971 0.99985 0.98152 1.19386 0.81909 0.91295 0.97140 0.94133 1.21163 1.07096 1.30427 0.96128 0.93687 1.25432 0.96774 0.96167 0.98584 1.70017 1.15617 1.40463 1.28823 0.85928 0.77473 0.78765 0.81347 1.20384 1.20773 1.20008 1.62760 1.10269 1.51993 1.01065 1.22195 0.96740 0.96722 0.92711 1.20577 0.92317 1.02560 0.95046 1.19749 0.95128 0.98405 0.93854 1.21321 0.91743 0.99027 1.01024 1.21228 1.01664 0.98374 0.91088 1.21250 0.91394 1.00993 1.00092 1.21113 0.94185 1.06434 0.86124 1.98349 1.84257 1.94497 1.28337 1.19693 0.95493 1.00559 0.93178 1.20703 0.89204 0.95936 0.96294 0.94461 0.94319 0.93893 0.94156 0.94501 0.93069 0.95336 0.91128 0.87520 0.89941 0.82528 0.81538 0.83228 0.91113 0.95004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 8.82 71.98 0.63 -4.20 16 2 C -0.13 -5.94 4.65 30.59 0.14 -5.80 16 3 C 0.21 10.40 1.97 44.17 0.09 10.49 16 4 H 0.04 2.28 7.16 -2.39 -0.02 2.27 16 5 C -0.51 -27.93 7.53 25.60 0.19 -27.73 16 6 H 0.04 2.52 6.11 -2.91 -0.02 2.51 16 7 C 0.03 1.67 4.44 84.65 0.38 2.05 16 8 N -0.91 -51.47 11.87 21.45 0.25 -51.22 16 9 Si 0.94 44.32 29.54 68.60 2.03 46.34 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.54 -23.48 4.68 -880.25 -4.12 -27.60 16 14 C 0.04 1.57 4.81 86.22 0.41 1.98 16 15 C -0.07 -1.87 5.94 29.82 0.18 -1.69 16 16 C -0.07 -2.04 5.76 -19.92 -0.11 -2.16 16 17 C -0.11 -2.39 9.61 22.13 0.21 -2.18 16 18 C -0.11 -2.00 10.02 22.03 0.22 -1.77 16 19 C -0.12 -2.76 9.82 22.25 0.22 -2.54 16 20 C -0.05 -1.58 6.31 22.39 0.14 -1.44 16 21 Cl -0.08 -2.63 27.36 -2.72 -0.07 -2.70 16 22 C -0.09 -3.03 5.78 -19.91 -0.12 -3.14 16 23 C 0.11 4.38 3.95 85.58 0.34 4.72 16 24 H 0.04 1.85 6.75 -2.39 -0.02 1.83 16 25 H 0.04 1.83 8.07 -2.39 -0.02 1.81 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.64 6.56 -2.39 -0.02 1.63 16 28 H 0.04 1.66 6.62 -2.39 -0.02 1.65 16 29 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 30 H 0.03 0.99 7.00 -2.39 -0.02 0.97 16 31 H 0.07 2.50 7.95 -2.39 -0.02 2.48 16 32 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.07 3.26 5.49 -2.39 -0.01 3.25 16 38 H 0.03 1.36 6.19 -2.39 -0.01 1.35 16 Total: -1.00 -61.50 308.98 2.07 -59.44 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.06 Total: 9.16 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 2.92 Total: -33.42 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -3.86 Total: -78.82 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.07 Total: -2.70 kcal Total: -61.50 2.07 -59.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.138 kcal (2) G-P(sol) polarization free energy of solvation -61.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds