Wall clock time and date at job start Fri Apr 10 2020 17:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47137 * 2 1 4 4 H 1.09002 * 109.47346 * 174.63511 * 3 2 1 5 5 C 1.50702 * 109.47116 * 294.62990 * 3 2 1 6 6 H 1.08005 * 120.00036 * 123.10505 * 5 3 2 7 7 C 1.37879 * 120.00156 * 303.11139 * 5 3 2 8 8 N 1.31513 * 119.99634 * 351.69227 * 7 5 3 9 9 Si 1.86793 * 120.00119 * 171.69496 * 7 5 3 10 10 H 1.48498 * 109.47148 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47342 * 119.99934 * 9 7 5 12 12 H 1.48494 * 109.47279 * 239.99877 * 9 7 5 13 13 N 1.46901 * 109.47486 * 54.63327 * 3 2 1 14 14 C 1.48334 * 111.00118 * 56.60179 * 13 3 2 15 15 C 1.56002 * 104.99222 * 122.92490 * 14 13 3 16 16 H 1.08996 * 116.12779 * 159.59727 * 15 14 13 17 17 C 1.57073 * 99.73937 * 32.89234 * 15 14 13 18 18 C 1.49791 * 111.00346 * 173.81200 * 13 3 2 19 19 H 1.09003 * 116.41293 * 74.05597 * 18 13 3 20 20 C 1.56099 * 103.75087 * 304.60812 * 18 13 3 21 21 H 1.09002 * 110.33550 * 169.49716 * 20 18 13 22 22 C 1.24279 * 136.50476 * 188.13012 * 4 3 2 23 23 F 1.19098 * 140.53773 * 308.37431 * 4 3 2 24 24 F 1.31398 * 87.33949 * 137.47747 * 4 3 2 25 25 F 1.39892 * 140.94094 * 219.14333 * 22 4 3 26 26 O 1.44109 * 105.40814 * 288.52166 * 20 18 13 27 27 H 1.08996 * 109.46734 * 64.99576 * 1 2 3 28 28 H 1.08998 * 109.47212 * 185.00024 * 1 2 3 29 29 H 1.09004 * 109.46906 * 304.99668 * 1 2 3 30 30 H 1.08996 * 109.47148 * 239.99504 * 2 1 3 31 31 H 1.09005 * 109.46816 * 119.99570 * 2 1 3 32 32 H 0.96997 * 120.00178 * 3.76264 * 8 7 5 33 33 H 1.09001 * 110.33949 * 241.80311 * 14 13 3 34 34 H 1.09001 * 110.33594 * 3.94319 * 14 13 3 35 35 H 1.09000 * 112.44918 * 63.59917 * 17 15 14 36 36 H 1.08996 * 112.44703 * 191.26027 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1258 1.4440 0.0961 5 6 1.6492 2.1135 -1.2916 6 1 1.0651 3.0218 -1.2731 7 6 2.0372 1.5678 -2.4969 8 7 2.8812 0.5595 -2.5209 9 14 1.3640 2.2606 -4.0956 10 1 0.4390 3.3835 -3.7979 11 1 2.4870 2.7527 -4.9336 12 1 0.6305 1.1963 -4.8265 13 7 1.4475 2.1714 1.1294 14 6 1.7437 1.4924 2.4145 15 6 2.4669 2.5685 3.2821 16 1 2.4642 2.3981 4.3587 17 6 1.7411 3.8608 2.7622 18 6 2.0367 3.5432 1.2514 19 1 1.7165 4.2761 0.5108 20 6 3.5719 3.2799 1.3541 21 1 4.1237 4.2153 1.2617 22 6 4.0143 2.2955 0.2696 23 9 3.9888 0.9941 0.7826 24 9 3.1446 2.3832 -0.8227 25 9 5.3139 2.6089 -0.1427 26 8 3.7756 2.7074 2.6608 27 1 -0.3633 0.4344 -0.9313 28 1 -0.3633 -1.0237 0.0896 29 1 -0.3633 0.5894 0.8419 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.1885 0.1643 -1.6900 33 1 0.8193 1.1753 2.8973 34 1 2.3969 0.6358 2.2486 35 1 0.6746 3.8582 2.9872 36 1 2.2288 4.7758 3.0984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:59 Heat of formation + Delta-G solvation = 161.421463 kcal Electronic energy + Delta-G solvation = -26178.869958 eV Core-core repulsion = 22263.250063 eV Total energy + Delta-G solvation = -3915.619895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -54.70757 -48.96219 -48.23228 -41.80610 -37.23678 -35.21877 -33.22964 -31.79461 -30.33088 -29.03456 -26.63006 -26.16255 -24.01874 -22.54068 -21.91613 -21.01375 -20.39953 -19.35078 -18.47932 -18.04203 -17.34767 -16.91316 -16.67225 -15.91885 -15.76311 -15.49700 -14.98044 -14.75235 -14.43778 -14.34866 -14.21734 -13.90637 -13.52477 -13.30499 -13.11178 -12.99773 -12.81333 -12.66401 -12.54060 -12.47934 -12.23619 -11.99778 -11.93547 -11.72371 -11.46923 -10.88453 -10.45237 -10.16465 -9.26713 -8.84927 -7.48664 -5.77059 1.52153 1.57809 1.77457 2.25364 2.48148 2.52998 2.95374 3.12649 3.36581 3.47924 3.66689 3.81820 3.97735 3.98969 4.37275 4.41260 4.48317 4.59976 4.72970 4.80005 4.82388 4.90685 4.93332 4.96269 5.08783 5.18890 5.29372 5.39152 5.46913 5.59421 5.63311 5.85090 6.00492 6.18630 6.27899 6.58281 6.94866 8.44787 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.010564 C = 0.009309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.929632 B = 2649.997701 C = 3007.171276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.146 4.146 3 C -0.062 4.062 4 H 0.254 0.746 5 C -0.403 4.403 6 H 0.067 0.933 7 C -0.043 4.043 8 N -0.864 5.864 9 Si 1.105 2.895 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.512 5.512 14 C 0.003 3.997 15 C 0.046 3.954 16 H 0.169 0.831 17 C -0.132 4.132 18 C 0.055 3.945 19 H 0.135 0.865 20 C -0.005 4.005 21 H 0.104 0.896 22 C 0.168 3.832 23 F -0.177 7.177 24 F 0.015 6.985 25 F -0.253 7.253 26 O -0.388 6.388 27 H 0.034 0.966 28 H 0.026 0.974 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.019 0.981 32 H 0.279 0.721 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.111 0.889 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 6.305 7.456 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.184 4.184 3 C -0.163 4.163 4 H 0.265 0.735 5 C -0.440 4.440 6 H 0.085 0.915 7 C -0.252 4.252 8 N -0.498 5.498 9 Si 0.926 3.074 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.236 5.236 14 C -0.125 4.125 15 C -0.011 4.011 16 H 0.186 0.814 17 C -0.169 4.169 18 C -0.054 4.054 19 H 0.153 0.847 20 C -0.066 4.066 21 H 0.122 0.878 22 C 0.116 3.884 23 F -0.159 7.159 24 F 0.036 6.964 25 F -0.235 7.235 26 O -0.308 6.308 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.801 6.047 5.808 9.206 hybrid contribution 0.774 -0.654 1.735 2.009 sum -3.027 5.394 7.543 9.754 Atomic orbital electron populations 1.21421 0.96435 0.98243 1.00888 1.22308 0.96240 1.02251 0.97599 1.31070 1.11252 0.87923 0.86096 0.73489 1.22810 1.19093 1.08539 0.93578 0.91482 1.27645 0.95709 0.96149 1.05648 1.70746 1.24641 1.21325 1.33103 0.83041 0.76434 0.76213 0.71698 1.18432 1.20368 1.20565 1.64927 1.54673 1.01538 1.02452 1.23891 0.99682 0.97143 0.91784 1.25509 0.81163 0.95487 0.98946 0.81434 1.24243 1.02977 0.97665 0.92037 1.24995 0.86851 0.94384 0.99142 0.84688 1.25091 1.02683 0.95965 0.82907 0.87791 1.34102 0.77654 0.77706 0.98909 1.91217 1.92423 1.45011 1.87234 1.96138 1.46431 1.94115 1.59699 1.92926 1.46304 1.92718 1.91538 1.89074 1.30490 1.83454 1.27752 0.94729 0.95461 0.92534 0.94412 0.96219 0.90757 0.89677 0.93841 0.87088 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.50 71.98 0.68 -4.10 16 2 C -0.15 -6.87 4.41 30.60 0.14 -6.73 16 3 C -0.06 -2.84 0.13 44.17 0.01 -2.83 16 4 H 0.25 12.15 0.14 -94.62 -0.01 12.14 16 5 C -0.40 -19.27 4.62 25.60 0.12 -19.15 16 6 H 0.07 3.13 7.36 -2.91 -0.02 3.11 16 7 C -0.04 -2.14 4.30 84.66 0.36 -1.77 16 8 N -0.86 -47.06 12.45 21.45 0.27 -46.79 16 9 Si 1.11 43.95 29.91 68.60 2.05 46.00 16 10 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 11 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 13 N -0.51 -20.05 4.11 ******* -4.37 -24.42 16 14 C 0.00 0.12 4.99 87.07 0.43 0.55 16 15 C 0.05 1.33 5.95 33.07 0.20 1.53 16 16 H 0.17 3.62 8.14 -2.39 -0.02 3.60 16 17 C -0.13 -3.35 6.87 33.50 0.23 -3.12 16 18 C 0.06 1.90 4.35 46.90 0.20 2.10 16 19 H 0.14 4.46 7.77 -2.39 -0.02 4.44 16 20 C -0.01 -0.21 3.55 31.67 0.11 -0.09 16 21 H 0.10 3.73 8.09 -2.39 -0.02 3.71 16 22 C 0.17 7.87 2.70 71.98 0.19 8.06 16 23 F -0.18 -8.76 11.66 44.97 0.52 -8.24 16 24 F 0.02 0.73 5.95 44.97 0.27 1.00 16 25 F -0.25 -12.47 17.29 44.97 0.78 -11.69 16 26 O -0.39 -14.72 10.31 -148.98 -1.54 -16.25 16 27 H 0.03 1.53 7.56 -2.39 -0.02 1.51 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 2.28 7.02 -2.38 -0.02 2.26 16 30 H 0.04 1.97 5.39 -2.39 -0.01 1.96 16 31 H 0.02 0.90 6.42 -2.38 -0.02 0.89 16 32 H 0.28 15.72 5.45 -92.71 -0.50 15.22 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.04 1.80 4.86 -2.39 -0.01 1.78 16 35 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -58.32 265.12 2.03 -56.28 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 1.37 Total: 29.67 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 2.68 Total: -25.56 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -4.10 Total: -71.22 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -1.54 Total: -16.25 kcal Atomic # 9 Polarization: -20.49 SS G_CDS: 1.57 Total: -18.93 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.05 Total: 46.00 kcal Total: -58.32 2.03 -56.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.703 kcal (2) G-P(sol) polarization free energy of solvation -58.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds