Wall clock time and date at job start Fri Apr 10 2020 17:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47012 * 2 1 4 4 H 1.08994 * 109.47362 * 53.69456 * 3 2 1 5 5 C 1.50699 * 109.46785 * 173.69657 * 3 2 1 6 6 H 1.07997 * 120.00520 * 120.00006 * 5 3 2 7 7 C 1.37882 * 119.99824 * 299.99540 * 5 3 2 8 8 N 1.31520 * 119.99464 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 120.00286 * 0.02562 * 7 5 3 10 10 H 1.48508 * 109.47040 * 89.99894 * 9 7 5 11 11 H 1.48495 * 109.47220 * 209.99771 * 9 7 5 12 12 H 1.48505 * 109.47311 * 330.00361 * 9 7 5 13 13 N 1.46898 * 109.47037 * 293.69143 * 3 2 1 14 14 C 1.48343 * 110.99801 * 75.76682 * 13 3 2 15 15 C 1.56006 * 104.98840 * 122.92102 * 14 13 3 16 16 H 1.09003 * 116.12033 * 158.77615 * 15 14 13 17 17 C 1.57056 * 99.74113 * 32.89384 * 15 14 13 18 18 C 1.50031 * 111.00356 * 193.02884 * 13 3 2 19 19 H 1.09008 * 116.55909 * 75.00794 * 18 13 3 20 20 C 1.56100 * 103.67636 * 304.60274 * 18 13 3 21 21 H 1.08998 * 110.25632 * 47.64046 * 20 18 13 22 22 C 1.53003 * 110.25644 * 169.58114 * 20 18 13 23 23 F 1.39893 * 109.47600 * 59.99839 * 22 20 18 24 24 F 1.39901 * 109.46736 * 180.02562 * 22 20 18 25 25 F 1.39901 * 109.47151 * 299.99589 * 22 20 18 26 26 O 1.44288 * 105.40516 * 288.58814 * 20 18 13 27 27 H 1.08994 * 109.47331 * 188.29503 * 1 2 3 28 28 H 1.09006 * 109.46838 * 308.29221 * 1 2 3 29 29 H 1.08998 * 109.47165 * 68.28843 * 1 2 3 30 30 H 1.08996 * 109.47139 * 240.00257 * 2 1 3 31 31 H 1.09006 * 109.47213 * 119.99632 * 2 1 3 32 32 H 0.97006 * 119.99392 * 179.97438 * 8 7 5 33 33 H 1.09000 * 110.33502 * 4.04753 * 14 13 3 34 34 H 1.09000 * 110.42500 * 241.84797 * 14 13 3 35 35 H 1.09000 * 112.45546 * 63.59880 * 17 15 14 36 36 H 1.09008 * 112.44867 * 191.16913 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5875 1.9880 0.8281 5 6 3.5389 1.4454 0.1560 6 1 4.1608 1.8841 -0.6102 7 6 4.1163 0.8879 1.2771 8 7 5.4245 0.8909 1.4134 9 14 3.0409 0.1287 2.6023 10 1 2.8265 -1.3098 2.3018 11 1 3.7100 0.2645 3.9209 12 1 1.7310 0.8274 2.6374 13 7 1.6785 2.0897 -1.2683 14 6 0.2387 2.4461 -1.2917 15 6 0.2080 3.9842 -1.5513 16 1 -0.7222 4.3843 -1.9547 17 6 1.4806 4.1256 -2.4607 18 6 2.4199 3.3823 -1.4429 19 1 3.4738 3.3073 -1.7112 20 6 2.0667 4.1876 -0.1532 21 1 2.1931 3.5608 0.7296 22 6 2.9487 5.4333 -0.0482 23 9 2.7411 6.2474 -1.1668 24 9 2.6191 6.1416 1.1123 25 9 4.2930 5.0497 0.0062 26 8 0.6826 4.5661 -0.3047 27 1 -0.3634 -1.0168 0.1483 28 1 -0.3633 0.6369 0.8066 29 1 -0.3633 0.3802 -0.9547 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 5.8307 0.4990 2.2024 33 1 -0.2245 2.2146 -0.3326 34 1 -0.2713 1.9159 -2.0959 35 1 1.3804 3.5881 -3.4037 36 1 1.7708 5.1655 -2.6118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:09 Heat of formation + Delta-G solvation = -147.426844 kcal Electronic energy + Delta-G solvation = -24554.552395 eV Core-core repulsion = 20625.539833 eV Total energy + Delta-G solvation = -3929.012563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.64378 -47.20376 -47.08010 -40.98217 -36.10533 -33.16606 -32.13739 -30.87805 -29.24227 -27.52385 -25.91646 -23.29065 -22.31822 -21.23693 -20.74662 -19.13099 -18.15613 -18.06628 -17.73800 -16.92887 -16.12796 -15.53462 -14.92462 -14.43373 -14.11174 -14.00384 -13.84681 -13.57178 -13.49579 -13.28614 -13.26161 -12.75421 -12.58522 -12.43450 -12.41755 -12.09218 -11.80227 -11.61852 -11.33813 -11.27759 -10.93491 -10.74090 -10.68126 -10.16198 -9.98365 -9.59269 -9.29378 -9.10801 -8.67679 -7.71333 -6.19413 -4.21706 3.07164 3.18119 3.29058 3.31321 3.60472 4.22732 4.27682 4.28694 4.44238 4.64422 4.75931 4.85132 5.02258 5.07262 5.12530 5.56568 5.72080 5.81909 5.82365 5.93638 5.96614 6.01902 6.05601 6.10595 6.30684 6.47518 6.50873 6.62943 6.65699 6.72027 7.01384 7.27311 7.67618 7.68312 8.42911 8.84230 9.40594 10.92163 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017576 B = 0.009805 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.694912 B = 2854.999274 C = 3773.281689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C 0.171 3.829 4 H 0.007 0.993 5 C -0.524 4.524 6 H 0.086 0.914 7 C 0.078 3.922 8 N -0.887 5.887 9 Si 0.878 3.122 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.266 1.266 13 N -0.492 5.492 14 C 0.000 4.000 15 C 0.044 3.956 16 H 0.139 0.861 17 C -0.173 4.173 18 C 0.075 3.925 19 H 0.143 0.857 20 C 0.000 4.000 21 H 0.146 0.854 22 C 0.447 3.553 23 F -0.187 7.187 24 F -0.187 7.187 25 F -0.166 7.166 26 O -0.359 6.359 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.266 0.734 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 5.582 -5.476 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.156 4.156 3 C 0.064 3.936 4 H 0.025 0.975 5 C -0.562 4.562 6 H 0.103 0.897 7 C -0.125 4.125 8 N -0.523 5.523 9 Si 0.708 3.292 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.191 1.191 13 N -0.215 5.215 14 C -0.129 4.129 15 C -0.013 4.013 16 H 0.157 0.843 17 C -0.211 4.211 18 C -0.033 4.033 19 H 0.161 0.839 20 C -0.061 4.061 21 H 0.163 0.837 22 C 0.392 3.608 23 F -0.168 7.168 24 F -0.168 7.168 25 F -0.147 7.147 26 O -0.278 6.278 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.169 5.268 -5.604 11.968 hybrid contribution -0.377 0.077 1.539 1.587 sum -9.546 5.345 -4.065 11.671 Atomic orbital electron populations 1.22188 0.98244 1.00218 1.01269 1.21858 0.93147 0.99106 1.01500 1.20072 0.97296 0.90835 0.85403 0.97527 1.21000 0.88506 1.40104 1.06609 0.89653 1.24908 0.94764 0.95207 0.97665 1.69871 1.09259 1.44449 1.28766 0.86991 0.80924 0.80099 0.81169 1.20262 1.22262 1.19134 1.65098 1.01336 1.18382 1.36696 1.24302 0.92552 0.93640 1.02363 1.25230 0.98211 0.93988 0.83913 0.84345 1.24657 0.95210 1.01963 0.99281 1.24892 1.00722 0.88302 0.89400 0.83914 1.25401 0.82653 0.91176 1.06843 0.83714 1.20981 0.80644 0.85938 0.73273 1.93071 1.94820 1.75905 1.53043 1.93149 1.92448 1.80997 1.50219 1.93252 1.34554 1.90935 1.96006 1.89109 1.22439 1.75152 1.41110 0.94107 0.93737 0.92004 0.91164 0.93052 0.92376 0.90912 0.89902 0.88438 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.39 37.16 0.31 -2.41 16 2 C -0.12 -2.44 5.10 -26.73 -0.14 -2.57 16 3 C 0.17 3.73 0.53 -68.86 -0.04 3.69 16 4 H 0.01 0.17 5.06 -51.93 -0.26 -0.09 16 5 C -0.52 -13.48 7.94 -34.44 -0.27 -13.76 16 6 H 0.09 2.37 6.45 -52.49 -0.34 2.03 16 7 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 8 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 9 Si 0.88 21.04 24.42 -169.99 -4.15 16.89 16 10 H -0.28 -6.46 6.82 56.52 0.39 -6.08 16 11 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 13 N -0.49 -9.20 5.12 -209.83 -1.07 -10.27 16 14 C 0.00 0.00 4.21 -1.42 -0.01 -0.01 16 15 C 0.04 0.61 5.95 -22.92 -0.14 0.48 16 16 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 17 C -0.17 -2.44 6.64 -22.26 -0.15 -2.59 16 18 C 0.08 1.35 3.46 -62.02 -0.21 1.14 16 19 H 0.14 2.73 6.81 -51.92 -0.35 2.38 16 20 C 0.00 0.00 2.48 -25.07 -0.06 -0.06 16 21 H 0.15 3.11 5.14 -51.93 -0.27 2.85 16 22 C 0.45 8.23 2.91 37.16 0.11 8.34 16 23 F -0.19 -3.14 14.68 2.25 0.03 -3.10 16 24 F -0.19 -3.51 17.31 2.25 0.04 -3.47 16 25 F -0.17 -3.33 16.94 2.25 0.04 -3.29 16 26 O -0.36 -6.27 10.83 -35.23 -0.38 -6.66 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.75 7.41 -51.93 -0.38 0.36 16 29 H 0.06 0.93 5.46 -51.93 -0.28 0.65 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.05 1.14 3.21 -51.93 -0.17 0.97 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.19 5.31 -51.93 -0.28 0.91 16 34 H 0.08 1.10 7.46 -51.93 -0.39 0.72 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.29 5.93 -51.92 -0.31 0.98 16 LS Contribution 275.86 15.07 4.16 4.16 Total: -1.00 -28.13 275.86 -5.16 -33.28 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.90 Total: 3.20 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.69 Total: -5.71 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.30 Total: -35.29 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.38 Total: -6.66 kcal Atomic # 9 Polarization: -9.97 SS G_CDS: 0.11 Total: -9.86 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.15 Total: 16.89 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.13 -5.16 -33.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.143 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds