Wall clock time and date at job start Fri Apr 10 2020 17:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 119.99939 * 2 1 4 4 C 1.50697 * 119.99833 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.47067 * 95.06366 * 4 2 1 6 6 C 1.46496 * 120.00269 * 87.75340 * 5 4 2 7 7 C 1.50701 * 109.47228 * 89.08412 * 6 5 4 8 8 C 1.34517 * 125.78715 * 88.32799 * 7 6 5 9 9 C 1.41380 * 106.83762 * 180.02562 * 8 7 6 10 10 C 1.34513 * 106.84709 * 0.22864 * 9 8 7 11 11 C 1.50692 * 125.79458 * 179.77009 * 10 9 8 12 12 O 1.42901 * 109.47111 * 90.00281 * 11 10 9 13 13 O 1.34303 * 125.79153 * 268.35836 * 7 6 5 14 14 C 1.34784 * 119.99966 * 267.75173 * 5 4 2 15 15 O 1.21680 * 119.99790 * 180.02562 * 14 5 4 16 16 C 1.46372 * 119.99779 * 0.02562 * 14 5 4 17 17 H 1.08002 * 119.99975 * 354.90738 * 16 14 5 18 18 C 1.40051 * 120.00131 * 174.91345 * 16 14 5 19 19 N 1.30673 * 119.99624 * 6.64718 * 18 16 14 20 20 Si 1.86799 * 120.00337 * 186.65124 * 18 16 14 21 21 H 1.48497 * 109.46885 * 94.95994 * 20 18 16 22 22 H 1.48503 * 109.46855 * 214.96168 * 20 18 16 23 23 H 1.48501 * 109.46701 * 334.95955 * 20 18 16 24 24 H 1.07998 * 119.99685 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00024 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47294 * 183.84634 * 3 2 1 27 27 H 1.09001 * 109.47426 * 303.83955 * 3 2 1 28 28 H 1.08998 * 109.47337 * 63.84634 * 3 2 1 29 29 H 1.09002 * 109.47600 * 335.06212 * 4 2 1 30 30 H 1.08996 * 109.47205 * 215.06290 * 4 2 1 31 31 H 1.09004 * 109.47059 * 329.08613 * 6 5 4 32 32 H 1.09000 * 109.47362 * 209.08576 * 6 5 4 33 33 H 1.08002 * 126.57972 * 359.97438 * 8 7 6 34 34 H 1.08001 * 126.57741 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47412 * 209.99968 * 11 10 9 36 36 H 1.08997 * 109.47241 * 330.00247 * 11 10 9 37 37 H 0.96703 * 114.00347 * 180.02562 * 12 11 10 38 38 H 0.97000 * 119.99748 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4132 -1.6677 -1.3751 6 6 3.6595 -1.1762 -1.9679 7 6 4.7728 -2.1488 -1.6751 8 6 5.1068 -3.2122 -2.4283 9 6 6.1982 -3.8417 -1.7870 10 6 6.4627 -3.1285 -0.6776 11 6 7.5460 -3.4289 0.3259 12 8 8.7480 -2.7565 -0.0551 13 8 5.5994 -2.1014 -0.6177 14 6 1.5883 -2.4534 -2.0954 15 8 1.8791 -2.7549 -3.2378 16 6 0.3429 -2.9440 -1.5033 17 1 0.1239 -2.7455 -0.4645 18 6 -0.5648 -3.6710 -2.2837 19 7 -0.2443 -4.0234 -3.5005 20 14 -2.2335 -4.1368 -1.5853 21 1 -3.2402 -3.1233 -1.9908 22 1 -2.6339 -5.4685 -2.1064 23 1 -2.1527 -4.1890 -0.1034 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 3.1332 1.1071 -0.0689 27 1 1.7496 1.9059 -0.8536 28 1 1.8529 1.8462 0.9224 29 1 1.4382 -2.0855 0.4342 30 1 2.9736 -1.1990 0.5909 31 1 3.9056 -0.2035 -1.5421 32 1 3.5356 -1.0798 -3.0465 33 1 4.6317 -3.5253 -3.3463 34 1 6.7171 -4.7279 -2.1213 35 1 7.2339 -3.0843 1.3117 36 1 7.7250 -4.5037 0.3565 37 1 9.4899 -2.9055 0.5470 38 1 -0.8731 -4.5265 -4.0412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342369060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:38 Heat of formation + Delta-G solvation = -47.569807 kcal Electronic energy + Delta-G solvation = -21999.682095 eV Core-core repulsion = 18616.856398 eV Total energy + Delta-G solvation = -3382.825696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.11177 -38.09166 -36.90667 -35.39059 -33.40707 -32.52420 -32.31013 -30.67659 -28.18859 -26.67224 -26.09697 -25.08886 -23.48312 -21.28282 -20.01067 -19.25272 -18.18591 -17.70326 -16.62044 -16.17418 -15.72609 -15.49654 -14.82950 -14.66505 -14.42530 -14.25334 -13.81699 -13.38859 -12.89003 -12.84042 -12.73845 -12.40203 -12.32264 -11.77727 -11.67358 -11.35753 -11.22807 -11.07358 -10.99792 -10.98382 -10.66337 -10.28351 -10.26202 -10.05553 -9.41005 -8.87397 -8.55256 -8.09014 -7.55706 -7.38298 -6.23447 -4.66253 2.00114 2.76797 3.05220 3.11482 3.19154 3.21459 3.25104 4.07892 4.41786 4.53890 4.70856 4.94009 5.09255 5.22203 5.38093 5.42038 5.45648 5.52902 5.70217 5.89086 5.93004 5.95380 6.09092 6.19541 6.28853 6.30808 6.49485 6.52847 6.54540 6.59150 7.03204 7.19400 7.41789 7.42859 7.45402 7.50020 7.68642 8.07371 8.28549 8.99185 9.34816 10.52858 10.71468 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.005457 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.733737 B = 5129.884450 C = 6085.414887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.149 4.149 3 C -0.112 4.112 4 C 0.161 3.839 5 N -0.629 5.629 6 C 0.202 3.798 7 C -0.003 4.003 8 C -0.194 4.194 9 C -0.180 4.180 10 C -0.046 4.046 11 C 0.165 3.835 12 O -0.568 6.568 13 O -0.173 6.173 14 C 0.560 3.440 15 O -0.572 6.572 16 C -0.537 4.537 17 H 0.074 0.926 18 C 0.089 3.911 19 N -0.765 5.765 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.264 1.264 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.381 0.619 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.457 3.811 9.165 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.169 4.169 4 C 0.037 3.963 5 N -0.365 5.365 6 C 0.077 3.923 7 C -0.055 4.055 8 C -0.214 4.214 9 C -0.200 4.200 10 C -0.096 4.096 11 C 0.087 3.913 12 O -0.374 6.374 13 O -0.070 6.070 14 C 0.366 3.634 15 O -0.454 6.454 16 C -0.574 4.574 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.393 5.393 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.188 1.188 24 H 0.103 0.897 25 H 0.128 0.872 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.229 0.771 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.171 3.945 8.082 12.845 hybrid contribution -0.537 -0.628 0.669 1.063 sum 8.634 3.317 8.751 12.733 Atomic orbital electron populations 1.23802 0.95517 1.01781 1.00184 1.22167 0.95862 0.96071 1.00967 1.20805 0.99792 0.95267 1.01064 1.20267 0.97808 0.93502 0.84725 1.48258 1.19625 1.54718 1.13888 1.19539 0.80300 0.91789 1.00643 1.23638 0.94328 1.01105 0.86424 1.21727 0.99129 0.97013 1.03560 1.21595 1.00178 1.02528 0.95662 1.21709 0.96105 0.91486 1.00303 1.20190 0.81434 0.95910 0.93729 1.86598 1.21438 1.74495 1.54887 1.83920 1.37277 1.43144 1.42661 1.18287 0.83239 0.76934 0.84918 1.90593 1.75468 1.60526 1.18814 1.20965 1.02756 1.35880 0.97755 0.90851 1.25700 0.99157 0.93827 0.94392 1.70017 1.34103 1.27313 1.07880 0.86454 0.82593 0.78334 0.80051 1.19700 1.20461 1.18785 0.89695 0.87199 0.92541 0.92269 0.92339 0.89441 0.92659 0.91077 0.87589 0.82958 0.83985 0.92085 0.90656 0.77125 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 13.71 29.01 0.40 -2.60 16 2 C -0.15 -2.54 5.63 -101.07 -0.57 -3.11 16 3 C -0.11 -1.58 9.99 36.00 0.36 -1.22 16 4 C 0.16 3.06 5.30 -5.19 -0.03 3.04 16 5 N -0.63 -14.06 2.44 -178.10 -0.43 -14.49 16 6 C 0.20 4.05 5.96 -5.20 -0.03 4.02 16 7 C 0.00 -0.06 6.90 -35.62 -0.25 -0.30 16 8 C -0.19 -3.99 10.81 -39.70 -0.43 -4.42 16 9 C -0.18 -3.19 10.81 -39.70 -0.43 -3.62 16 10 C -0.05 -0.78 6.95 -35.63 -0.25 -1.03 16 11 C 0.16 1.94 7.57 36.00 0.27 2.21 16 12 O -0.57 -6.59 13.64 -35.23 -0.48 -7.07 16 13 O -0.17 -3.29 10.65 5.69 0.06 -3.23 16 14 C 0.56 15.36 7.61 -12.98 -0.10 15.26 16 15 O -0.57 -17.71 14.61 5.21 0.08 -17.63 16 16 C -0.54 -14.50 8.14 -35.63 -0.29 -14.79 16 17 H 0.07 1.82 4.56 -52.49 -0.24 1.58 16 18 C 0.09 2.42 5.49 -17.36 -0.10 2.32 16 19 N -0.76 -22.37 11.86 55.55 0.66 -21.71 16 20 Si 0.90 19.69 29.56 -169.99 -5.03 14.66 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 H 0.08 1.27 8.05 -52.49 -0.42 0.85 16 25 H 0.11 2.07 6.18 -52.49 -0.32 1.74 16 26 H 0.06 0.76 6.96 -51.92 -0.36 0.40 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.75 5.76 -51.93 -0.30 1.45 16 30 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.07 1.22 6.97 -51.93 -0.36 0.86 16 32 H 0.11 2.26 7.39 -51.93 -0.38 1.87 16 33 H 0.15 3.33 8.06 -52.49 -0.42 2.91 16 34 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.38 2.12 9.12 45.56 0.42 2.53 16 38 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -34.86 329.02 -5.69 -40.55 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.07 Total: 8.20 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.43 Total: -4.24 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.22 Total: -36.20 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.34 Total: -27.93 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.86 -5.69 -40.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342369060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.022 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds