Wall clock time and date at job start Fri Apr 10 2020 17:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 119.99939 * 2 1 4 4 C 1.50697 * 119.99833 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.47067 * 95.06366 * 4 2 1 6 6 C 1.46496 * 120.00269 * 87.75340 * 5 4 2 7 7 C 1.50701 * 109.47228 * 89.08412 * 6 5 4 8 8 C 1.34517 * 125.78715 * 88.32799 * 7 6 5 9 9 C 1.41380 * 106.83762 * 180.02562 * 8 7 6 10 10 C 1.34513 * 106.84709 * 0.22864 * 9 8 7 11 11 C 1.50692 * 125.79458 * 179.77009 * 10 9 8 12 12 O 1.42901 * 109.47111 * 90.00281 * 11 10 9 13 13 O 1.34303 * 125.79153 * 268.35836 * 7 6 5 14 14 C 1.34784 * 119.99966 * 267.75173 * 5 4 2 15 15 O 1.21680 * 119.99790 * 180.02562 * 14 5 4 16 16 C 1.46372 * 119.99779 * 0.02562 * 14 5 4 17 17 H 1.08002 * 119.99975 * 354.90738 * 16 14 5 18 18 C 1.40051 * 120.00131 * 174.91345 * 16 14 5 19 19 N 1.30673 * 119.99624 * 6.64718 * 18 16 14 20 20 Si 1.86799 * 120.00337 * 186.65124 * 18 16 14 21 21 H 1.48497 * 109.46885 * 94.95994 * 20 18 16 22 22 H 1.48503 * 109.46855 * 214.96168 * 20 18 16 23 23 H 1.48501 * 109.46701 * 334.95955 * 20 18 16 24 24 H 1.07998 * 119.99685 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00024 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47294 * 183.84634 * 3 2 1 27 27 H 1.09001 * 109.47426 * 303.83955 * 3 2 1 28 28 H 1.08998 * 109.47337 * 63.84634 * 3 2 1 29 29 H 1.09002 * 109.47600 * 335.06212 * 4 2 1 30 30 H 1.08996 * 109.47205 * 215.06290 * 4 2 1 31 31 H 1.09004 * 109.47059 * 329.08613 * 6 5 4 32 32 H 1.09000 * 109.47362 * 209.08576 * 6 5 4 33 33 H 1.08002 * 126.57972 * 359.97438 * 8 7 6 34 34 H 1.08001 * 126.57741 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47412 * 209.99968 * 11 10 9 36 36 H 1.08997 * 109.47241 * 330.00247 * 11 10 9 37 37 H 0.96703 * 114.00347 * 180.02562 * 12 11 10 38 38 H 0.97000 * 119.99748 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4132 -1.6677 -1.3751 6 6 3.6595 -1.1762 -1.9679 7 6 4.7728 -2.1488 -1.6751 8 6 5.1068 -3.2122 -2.4283 9 6 6.1982 -3.8417 -1.7870 10 6 6.4627 -3.1285 -0.6776 11 6 7.5460 -3.4289 0.3259 12 8 8.7480 -2.7565 -0.0551 13 8 5.5994 -2.1014 -0.6177 14 6 1.5883 -2.4534 -2.0954 15 8 1.8791 -2.7549 -3.2378 16 6 0.3429 -2.9440 -1.5033 17 1 0.1239 -2.7455 -0.4645 18 6 -0.5648 -3.6710 -2.2837 19 7 -0.2443 -4.0234 -3.5005 20 14 -2.2335 -4.1368 -1.5853 21 1 -3.2402 -3.1233 -1.9908 22 1 -2.6339 -5.4685 -2.1064 23 1 -2.1527 -4.1890 -0.1034 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 3.1332 1.1071 -0.0689 27 1 1.7496 1.9059 -0.8536 28 1 1.8529 1.8462 0.9224 29 1 1.4382 -2.0855 0.4342 30 1 2.9736 -1.1990 0.5909 31 1 3.9056 -0.2035 -1.5421 32 1 3.5356 -1.0798 -3.0465 33 1 4.6317 -3.5253 -3.3463 34 1 6.7171 -4.7279 -2.1213 35 1 7.2339 -3.0843 1.3117 36 1 7.7250 -4.5037 0.3565 37 1 9.4899 -2.9055 0.5470 38 1 -0.8731 -4.5265 -4.0412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342369060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:38 Heat of formation + Delta-G solvation = -72.788749 kcal Electronic energy + Delta-G solvation = -22000.775670 eV Core-core repulsion = 18616.856398 eV Total energy + Delta-G solvation = -3383.919272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.57089 -39.93110 -37.78887 -37.10865 -35.13643 -34.33253 -33.95734 -32.12180 -29.66106 -27.97062 -27.87534 -26.62777 -24.99037 -22.76998 -21.66281 -20.93605 -19.69895 -18.58649 -18.29219 -17.70518 -17.65340 -17.07826 -16.16835 -16.13115 -16.01499 -15.54384 -15.24112 -14.82303 -14.45002 -14.40521 -13.99085 -13.88241 -13.82980 -13.54077 -13.11711 -12.93783 -12.82130 -12.70750 -12.63321 -12.43498 -12.22100 -12.02700 -11.75743 -11.09223 -10.92062 -10.89517 -9.99594 -9.78772 -9.42065 -9.18508 -8.27801 -6.79381 0.58234 1.36431 1.38743 1.40843 1.54180 1.58801 1.85583 2.24350 2.49354 3.00745 3.42538 3.63017 3.84799 3.99182 4.06410 4.08431 4.09844 4.22909 4.38462 4.47477 4.53836 4.60145 4.78748 4.82215 4.85423 4.98645 5.04670 5.10056 5.17696 5.20155 5.40795 5.51976 5.70201 5.83864 6.07109 6.15997 6.21049 6.35256 6.89483 6.90474 7.38139 8.47788 8.68322 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.005457 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.733737 B = 5129.884450 C = 6085.414887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.154 4.154 3 C -0.107 4.107 4 C 0.159 3.841 5 N -0.628 5.628 6 C 0.205 3.795 7 C -0.019 4.019 8 C -0.218 4.218 9 C -0.196 4.196 10 C -0.038 4.038 11 C 0.167 3.833 12 O -0.588 6.588 13 O -0.176 6.176 14 C 0.546 3.454 15 O -0.621 6.621 16 C -0.555 4.555 17 H 0.091 0.909 18 C 0.034 3.966 19 N -0.819 5.819 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.247 1.247 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.167 0.833 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.408 0.592 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.962 4.502 12.028 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.155 4.155 3 C -0.164 4.164 4 C 0.036 3.964 5 N -0.362 5.362 6 C 0.081 3.919 7 C -0.071 4.071 8 C -0.239 4.239 9 C -0.215 4.215 10 C -0.088 4.088 11 C 0.090 3.910 12 O -0.399 6.399 13 O -0.073 6.073 14 C 0.352 3.648 15 O -0.507 6.507 16 C -0.591 4.591 17 H 0.109 0.891 18 C -0.181 4.181 19 N -0.449 5.449 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.170 1.170 24 H 0.128 0.872 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.184 0.816 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.261 0.739 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.723 4.669 11.010 15.413 hybrid contribution -0.539 -0.843 -0.181 1.017 sum 9.184 3.826 10.829 14.705 Atomic orbital electron populations 1.23876 0.95738 1.02020 1.00226 1.22252 0.95972 0.96407 1.00886 1.20801 0.99530 0.93579 1.02485 1.20400 0.98822 0.94328 0.82845 1.48035 1.19686 1.53698 1.14805 1.19527 0.79542 0.93288 0.99520 1.23417 0.95085 1.01269 0.87280 1.21743 1.00633 0.98224 1.03263 1.21862 0.99742 1.03783 0.96125 1.22788 0.95903 0.89589 1.00482 1.20409 0.80208 0.97743 0.92610 1.86509 1.22232 1.74751 1.56410 1.83913 1.37450 1.44027 1.41907 1.18621 0.84134 0.77326 0.84677 1.90551 1.76750 1.62464 1.20959 1.21415 1.03015 1.35985 0.98728 0.89122 1.26858 1.03661 0.93169 0.94444 1.70190 1.36095 1.28668 1.09912 0.85211 0.76511 0.78025 0.79944 1.18748 1.20061 1.16999 0.87215 0.89289 0.92067 0.92048 0.89773 0.90906 0.90614 0.87761 0.89923 0.85742 0.81556 0.90016 0.87508 0.73919 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.95 13.71 67.78 0.93 -5.02 16 2 C -0.15 -5.00 5.63 -16.50 -0.09 -5.09 16 3 C -0.11 -2.70 9.99 71.23 0.71 -1.99 16 4 C 0.16 5.94 5.30 85.63 0.45 6.39 16 5 N -0.63 -28.63 2.44 -835.61 -2.04 -30.67 16 6 C 0.21 8.44 5.96 85.63 0.51 8.95 16 7 C -0.02 -0.76 6.90 24.83 0.17 -0.59 16 8 C -0.22 -9.38 10.81 22.19 0.24 -9.14 16 9 C -0.20 -6.88 10.81 22.19 0.24 -6.64 16 10 C -0.04 -1.21 6.95 24.83 0.17 -1.03 16 11 C 0.17 3.34 7.57 71.23 0.54 3.88 16 12 O -0.59 -11.62 13.64 -148.98 -2.03 -13.65 16 13 O -0.18 -6.50 10.65 -2.55 -0.03 -6.53 16 14 C 0.55 31.17 7.61 86.36 0.66 31.83 16 15 O -0.62 -40.77 14.61 -4.28 -0.06 -40.84 16 16 C -0.56 -30.67 8.14 24.83 0.20 -30.47 16 17 H 0.09 4.53 4.56 -2.91 -0.01 4.52 16 18 C 0.03 1.87 5.49 85.31 0.47 2.34 16 19 N -0.82 -49.80 11.86 21.84 0.26 -49.54 16 20 Si 0.98 40.69 29.56 68.60 2.03 42.72 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 24 H 0.11 3.03 8.05 -2.91 -0.02 3.01 16 25 H 0.09 3.30 6.18 -2.91 -0.02 3.28 16 26 H 0.06 1.47 6.96 -2.38 -0.02 1.46 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 2.91 5.76 -2.39 -0.01 2.89 16 30 H 0.08 2.50 8.09 -2.39 -0.02 2.48 16 31 H 0.10 3.49 6.97 -2.38 -0.02 3.48 16 32 H 0.08 3.75 7.39 -2.39 -0.02 3.73 16 33 H 0.12 5.97 8.06 -2.91 -0.02 5.95 16 34 H 0.17 4.81 8.06 -2.91 -0.02 4.78 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.41 2.96 9.12 -74.06 -0.68 2.29 16 38 H 0.27 15.10 8.29 -92.71 -0.77 14.33 16 Total: -1.00 -79.54 329.02 3.74 -75.79 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.41 Total: 29.30 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.20 Total: -6.58 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.78 Total: -80.21 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -2.12 Total: -61.02 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -79.54 3.74 -75.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342369060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.005 kcal (2) G-P(sol) polarization free energy of solvation -79.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds