Wall clock time and date at job start Fri Apr 10 2020 17:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00715 * 2 1 4 4 H 1.48492 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47086 * 300.00500 * 3 2 1 6 6 H 1.48501 * 109.47008 * 59.99886 * 3 2 1 7 7 C 1.37884 * 119.99339 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00293 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99757 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.46820 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47639 * 65.00339 * 12 11 10 14 14 C 1.46892 * 111.00176 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.47653 * 35.00143 * 14 13 12 16 16 C 1.50706 * 109.47226 * 274.99852 * 14 13 12 17 17 O 1.20825 * 119.99859 * 359.97438 * 16 14 13 18 18 O 1.34224 * 120.00295 * 180.02562 * 16 14 13 19 19 C 1.50705 * 109.46899 * 154.99874 * 14 13 12 20 20 C 1.38234 * 120.00276 * 39.72766 * 19 14 13 21 21 C 1.38230 * 120.00068 * 179.81017 * 20 19 14 22 22 C 1.38238 * 120.00020 * 0.39510 * 21 20 19 23 23 C 1.38231 * 120.00038 * 359.85487 * 22 21 20 24 24 C 1.38235 * 119.99743 * 219.99674 * 19 14 13 25 25 H 0.97004 * 119.99331 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46652 * 60.00692 * 9 7 2 27 27 H 1.08998 * 109.47167 * 300.00915 * 9 7 2 28 28 H 1.09000 * 109.46713 * 60.00100 * 11 10 9 29 29 H 1.08997 * 109.46962 * 300.00925 * 11 10 9 30 30 H 1.09001 * 109.47387 * 304.99345 * 12 11 10 31 31 H 1.09003 * 109.46679 * 185.00232 * 12 11 10 32 32 H 1.00897 * 110.99697 * 56.03811 * 13 12 11 33 33 H 0.96700 * 117.00196 * 179.97438 * 18 16 14 34 34 H 1.08001 * 119.99422 * 359.97438 * 20 19 14 35 35 H 1.07997 * 119.99819 * 180.22710 * 21 20 19 36 36 H 1.08001 * 119.99893 * 179.83624 * 22 21 20 37 37 H 1.07992 * 120.00435 * 179.97438 * 23 22 21 38 38 H 1.08001 * 120.00282 * 359.97438 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 8 2.1794 -3.5855 -0.0005 11 6 1.5647 -4.8756 -0.0011 12 6 2.6476 -5.9563 -0.0004 13 7 3.4067 -5.8882 1.2554 14 6 4.4573 -6.9142 1.2918 15 1 4.8601 -7.0576 0.2891 16 6 3.8750 -8.2120 1.7896 17 8 2.7050 -8.2755 2.0843 18 8 4.6564 -9.2971 1.9065 19 6 5.5606 -6.4708 2.2176 20 6 5.2524 -5.8314 3.4038 21 6 6.2643 -5.4281 4.2548 22 6 7.5848 -5.6570 3.9159 23 6 7.8933 -6.2917 2.7273 24 6 6.8811 -6.6984 1.8780 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8904 27 1 0.6244 -2.5571 0.8896 28 1 0.9449 -4.9822 -0.8914 29 1 0.9442 -4.9827 0.8885 30 1 3.3217 -5.7958 -0.8418 31 1 2.1815 -6.9376 -0.0905 32 1 2.7942 -5.9697 2.0530 33 1 4.2380 -10.1065 2.2304 34 1 4.2209 -5.6493 3.6668 35 1 6.0233 -4.9319 5.1833 36 1 8.3755 -5.3396 4.5796 37 1 8.9248 -6.4702 2.4622 38 1 7.1221 -7.1945 0.9494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385284889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:46 Heat of formation + Delta-G solvation = -110.783702 kcal Electronic energy + Delta-G solvation = -21168.476788 eV Core-core repulsion = 17782.909931 eV Total energy + Delta-G solvation = -3385.566856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84665 -39.07194 -37.24749 -36.40463 -35.37736 -32.75997 -31.87562 -30.93502 -28.85500 -27.01135 -25.82156 -22.75421 -22.73540 -22.24023 -21.47741 -20.70875 -18.37323 -17.34669 -17.18310 -16.31071 -16.06523 -15.64745 -15.49113 -15.01653 -14.69380 -14.48529 -14.18362 -13.71525 -13.49665 -13.33650 -12.96773 -12.81411 -12.54304 -12.27409 -11.82843 -11.78087 -11.31924 -11.21756 -11.06888 -10.93464 -10.77049 -10.72309 -10.46962 -9.96509 -9.03366 -8.93422 -8.82791 -8.76484 -8.58360 -8.10049 -6.05827 -4.06510 1.22046 1.39600 1.94588 2.82327 3.32857 3.39157 3.46491 3.69150 4.11692 4.39648 4.51968 4.73071 4.89709 4.92998 5.04158 5.07202 5.08780 5.30887 5.43374 5.47694 5.56963 5.63385 5.86610 5.99311 6.00014 6.08531 6.22036 6.25737 6.38951 6.48201 6.49298 6.84490 6.95080 7.15696 7.27359 7.48934 7.63076 7.86355 8.21967 8.65686 9.08322 9.58190 11.05966 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.004096 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.188722 B = 6834.855246 C = 8094.327485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.381 6.381 11 C 0.066 3.934 12 C 0.059 3.941 13 N -0.637 5.637 14 C 0.138 3.862 15 H 0.124 0.876 16 C 0.455 3.545 17 O -0.515 6.515 18 O -0.512 6.512 19 C -0.071 4.071 20 C -0.088 4.088 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.098 4.098 25 H 0.262 0.738 26 H 0.003 0.997 27 H 0.004 0.996 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.354 0.646 33 H 0.405 0.595 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.717 -18.423 5.405 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.300 6.300 11 C -0.012 4.012 12 C -0.070 4.070 13 N -0.270 5.270 14 C 0.025 3.975 15 H 0.142 0.858 16 C 0.294 3.706 17 O -0.403 6.403 18 O -0.322 6.322 19 C -0.072 4.072 20 C -0.106 4.106 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.117 4.117 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.175 0.825 33 H 0.263 0.737 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.018 -17.421 5.109 22.339 hybrid contribution -0.945 -0.440 0.359 1.103 sum 12.072 -17.860 5.468 22.240 Atomic orbital electron populations 1.69981 1.06110 1.26926 1.50986 1.24949 0.94949 0.99407 0.95284 0.86298 0.80101 0.82669 0.77539 1.19441 1.20926 1.20897 1.21107 0.94139 0.89309 1.50192 0.91439 1.20198 0.88859 0.83882 0.95186 1.87953 1.34692 1.12321 1.95066 1.22179 0.93623 0.86077 0.99313 1.22161 0.96135 0.96674 0.91982 1.60842 1.16966 1.43021 1.06169 1.20353 0.93461 0.83503 1.00173 0.85795 1.25098 0.84984 0.86535 0.73938 1.90732 1.18123 1.84819 1.46603 1.84605 1.46398 1.22028 1.79128 1.19233 0.92768 1.00306 0.94921 1.20987 0.99852 0.96437 0.93352 1.21142 0.92807 1.00084 0.99852 1.21174 0.96488 0.98826 0.96977 1.21060 0.99008 0.99397 0.94729 1.20940 0.91710 0.99394 0.99639 0.92812 0.97950 0.97845 0.93796 0.94474 0.89861 0.93991 0.82463 0.73685 0.85852 0.85907 0.86178 0.86006 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -15.30 9.43 -34.44 -0.32 -15.63 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.41 5.69 36.01 0.20 5.62 16 10 O -0.38 -9.35 10.27 -35.23 -0.36 -9.72 16 11 C 0.07 1.25 6.22 37.15 0.23 1.48 16 12 C 0.06 0.89 5.76 -3.83 -0.02 0.87 16 13 N -0.64 -9.53 5.50 -109.19 -0.60 -10.13 16 14 C 0.14 1.67 2.70 -70.02 -0.19 1.48 16 15 H 0.12 1.30 7.66 -51.93 -0.40 0.90 16 16 C 0.45 5.31 7.44 36.01 0.27 5.58 16 17 O -0.51 -7.39 16.06 -18.75 -0.30 -7.69 16 18 O -0.51 -4.53 13.34 -39.24 -0.52 -5.05 16 19 C -0.07 -0.87 4.88 -104.62 -0.51 -1.38 16 20 C -0.09 -1.12 9.32 -39.59 -0.37 -1.49 16 21 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.10 -1.05 9.67 -39.58 -0.38 -1.44 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 31 H 0.04 0.57 7.62 -51.93 -0.40 0.17 16 32 H 0.35 5.40 7.09 -39.29 -0.28 5.12 16 33 H 0.40 1.93 9.10 45.56 0.41 2.35 16 34 H 0.12 1.59 7.24 -52.49 -0.38 1.21 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -34.80 333.71 -7.81 -42.61 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.38 Total: 2.77 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.38 Total: -8.38 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.14 Total: -36.77 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.19 Total: -22.45 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.80 -7.81 -42.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385284889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.170 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds