Wall clock time and date at job start Fri Apr 10 2020 17:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00715 * 2 1 4 4 H 1.48492 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47086 * 300.00500 * 3 2 1 6 6 H 1.48501 * 109.47008 * 59.99886 * 3 2 1 7 7 C 1.37884 * 119.99339 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00293 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99757 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.46820 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47639 * 65.00339 * 12 11 10 14 14 C 1.46892 * 111.00176 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.47653 * 35.00143 * 14 13 12 16 16 C 1.50706 * 109.47226 * 274.99852 * 14 13 12 17 17 O 1.20825 * 119.99859 * 359.97438 * 16 14 13 18 18 O 1.34224 * 120.00295 * 180.02562 * 16 14 13 19 19 C 1.50705 * 109.46899 * 154.99874 * 14 13 12 20 20 C 1.38234 * 120.00276 * 39.72766 * 19 14 13 21 21 C 1.38230 * 120.00068 * 179.81017 * 20 19 14 22 22 C 1.38238 * 120.00020 * 0.39510 * 21 20 19 23 23 C 1.38231 * 120.00038 * 359.85487 * 22 21 20 24 24 C 1.38235 * 119.99743 * 219.99674 * 19 14 13 25 25 H 0.97004 * 119.99331 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46652 * 60.00692 * 9 7 2 27 27 H 1.08998 * 109.47167 * 300.00915 * 9 7 2 28 28 H 1.09000 * 109.46713 * 60.00100 * 11 10 9 29 29 H 1.08997 * 109.46962 * 300.00925 * 11 10 9 30 30 H 1.09001 * 109.47387 * 304.99345 * 12 11 10 31 31 H 1.09003 * 109.46679 * 185.00232 * 12 11 10 32 32 H 1.00897 * 110.99697 * 56.03811 * 13 12 11 33 33 H 0.96700 * 117.00196 * 179.97438 * 18 16 14 34 34 H 1.08001 * 119.99422 * 359.97438 * 20 19 14 35 35 H 1.07997 * 119.99819 * 180.22710 * 21 20 19 36 36 H 1.08001 * 119.99893 * 179.83624 * 22 21 20 37 37 H 1.07992 * 120.00435 * 179.97438 * 23 22 21 38 38 H 1.08001 * 120.00282 * 359.97438 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 8 2.1794 -3.5855 -0.0005 11 6 1.5647 -4.8756 -0.0011 12 6 2.6476 -5.9563 -0.0004 13 7 3.4067 -5.8882 1.2554 14 6 4.4573 -6.9142 1.2918 15 1 4.8601 -7.0576 0.2891 16 6 3.8750 -8.2120 1.7896 17 8 2.7050 -8.2755 2.0843 18 8 4.6564 -9.2971 1.9065 19 6 5.5606 -6.4708 2.2176 20 6 5.2524 -5.8314 3.4038 21 6 6.2643 -5.4281 4.2548 22 6 7.5848 -5.6570 3.9159 23 6 7.8933 -6.2917 2.7273 24 6 6.8811 -6.6984 1.8780 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8904 27 1 0.6244 -2.5571 0.8896 28 1 0.9449 -4.9822 -0.8914 29 1 0.9442 -4.9827 0.8885 30 1 3.3217 -5.7958 -0.8418 31 1 2.1815 -6.9376 -0.0905 32 1 2.7942 -5.9697 2.0530 33 1 4.2380 -10.1065 2.2304 34 1 4.2209 -5.6493 3.6668 35 1 6.0233 -4.9319 5.1833 36 1 8.3755 -5.3396 4.5796 37 1 8.9248 -6.4702 2.4622 38 1 7.1221 -7.1945 0.9494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385284889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:46 Heat of formation + Delta-G solvation = -135.583885 kcal Electronic energy + Delta-G solvation = -21169.552205 eV Core-core repulsion = 17782.909931 eV Total energy + Delta-G solvation = -3386.642273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76562 -39.90617 -38.80650 -37.49187 -36.56400 -34.90131 -33.03083 -31.75699 -30.25703 -28.85129 -27.05521 -24.49158 -23.68578 -23.58836 -22.72044 -21.58620 -19.25067 -18.69475 -18.28021 -17.99460 -17.40820 -17.05497 -16.67475 -16.40439 -15.99341 -15.85131 -15.34617 -14.94579 -14.91858 -14.38099 -14.19587 -13.99659 -13.67571 -13.53476 -13.29761 -12.98707 -12.81425 -12.65946 -12.60421 -12.37122 -12.14177 -11.92431 -11.84035 -11.73781 -11.24345 -10.86577 -10.20304 -9.78806 -9.71094 -9.62459 -8.30796 -6.42516 0.38143 0.56245 1.04221 1.40637 1.42225 1.57336 2.00801 2.36302 2.76805 3.03096 3.11128 3.22151 3.62709 3.86888 4.11118 4.16300 4.19134 4.27061 4.28907 4.36348 4.52234 4.60985 4.68266 4.76033 4.81403 4.92975 5.06274 5.18893 5.19708 5.45774 5.54753 5.57562 5.61644 5.66808 5.82717 5.98486 6.08498 6.14477 6.56816 6.85799 6.86454 7.29545 8.81955 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.004096 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.188722 B = 6834.855246 C = 8094.327485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.207 3.793 10 O -0.393 6.393 11 C 0.057 3.943 12 C 0.071 3.929 13 N -0.657 5.657 14 C 0.139 3.861 15 H 0.143 0.857 16 C 0.465 3.535 17 O -0.547 6.547 18 O -0.502 6.502 19 C -0.086 4.086 20 C -0.114 4.114 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.104 4.104 25 H 0.270 0.730 26 H -0.014 1.014 27 H -0.018 1.018 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.347 0.653 33 H 0.425 0.575 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.969 -18.658 5.140 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.132 3.868 10 O -0.313 6.313 11 C -0.020 4.020 12 C -0.058 4.058 13 N -0.289 5.289 14 C 0.027 3.973 15 H 0.161 0.839 16 C 0.306 3.694 17 O -0.437 6.437 18 O -0.313 6.313 19 C -0.087 4.087 20 C -0.132 4.132 21 C -0.153 4.153 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.122 4.122 25 H 0.079 0.921 26 H 0.003 0.997 27 H -0.001 1.001 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.168 0.832 33 H 0.286 0.714 34 H 0.126 0.874 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.284 -17.707 4.845 23.888 hybrid contribution -1.621 -0.497 0.479 1.762 sum 13.663 -18.204 5.324 23.375 Atomic orbital electron populations 1.70085 1.07780 1.28515 1.50797 1.25961 0.95941 1.03375 0.93958 0.85135 0.78678 0.77313 0.78274 1.18845 1.19542 1.19703 1.21404 0.94043 0.90823 1.51849 0.92129 1.19819 0.88709 0.85012 0.93230 1.87906 1.34591 1.13705 1.95081 1.22508 0.95333 0.84554 0.99651 1.22038 0.95351 0.95821 0.92563 1.60796 1.17309 1.45129 1.05653 1.20352 0.92466 0.83172 1.01304 0.83940 1.24848 0.84385 0.86981 0.73170 1.90727 1.19474 1.85360 1.48181 1.84539 1.45827 1.22331 1.78639 1.19336 0.93554 1.00977 0.94798 1.21054 0.99635 0.98017 0.94524 1.21368 0.93347 1.00368 1.00194 1.21521 0.96457 0.98249 0.97581 1.21461 1.00291 0.98300 0.94211 1.21254 0.91084 0.99224 1.00644 0.92101 0.99671 1.00062 0.92809 0.94751 0.89038 0.91932 0.83183 0.71378 0.87380 0.85008 0.83773 0.83188 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.98 45.34 29.54 68.60 2.03 47.36 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.54 -33.32 9.43 25.60 0.24 -33.08 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.68 16 9 C 0.21 12.06 5.69 71.24 0.41 12.47 16 10 O -0.39 -19.84 10.27 -148.98 -1.53 -21.37 16 11 C 0.06 2.19 6.22 71.98 0.45 2.64 16 12 C 0.07 2.11 5.76 86.30 0.50 2.61 16 13 N -0.66 -19.74 5.50 -499.37 -2.75 -22.49 16 14 C 0.14 3.25 2.70 43.43 0.12 3.36 16 15 H 0.14 2.71 7.66 -2.39 -0.02 2.69 16 16 C 0.46 10.39 7.44 71.24 0.53 10.92 16 17 O -0.55 -15.53 16.06 21.97 0.35 -15.18 16 18 O -0.50 -7.86 13.34 -51.35 -0.69 -8.55 16 19 C -0.09 -2.03 4.88 -19.86 -0.10 -2.13 16 20 C -0.11 -2.95 9.32 22.27 0.21 -2.74 16 21 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 22 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 23 C -0.12 -2.16 10.05 22.27 0.22 -1.93 16 24 C -0.10 -2.00 9.67 22.27 0.22 -1.78 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 27 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 2.57 8.06 -2.39 -0.02 2.55 16 31 H 0.06 1.62 7.62 -2.39 -0.02 1.61 16 32 H 0.35 11.03 7.09 -89.70 -0.64 10.39 16 33 H 0.42 3.15 9.10 -74.06 -0.67 2.47 16 34 H 0.11 3.01 7.24 -2.91 -0.02 2.98 16 35 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.15 2.05 8.04 -2.91 -0.02 2.03 16 Total: -1.00 -75.37 333.71 1.17 -74.20 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.23 Total: 16.58 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 3.70 Total: -13.66 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -2.46 Total: -79.38 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.86 Total: -45.10 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.37 1.17 -74.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385284889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.381 kcal (2) G-P(sol) polarization free energy of solvation -75.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds