Wall clock time and date at job start Fri Apr 10 2020 17:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37639 * 120.09910 * 2 1 4 4 C 1.39248 * 119.94636 * 179.97438 * 3 2 1 5 5 N 1.39010 * 119.92388 * 180.02562 * 4 3 2 6 6 C 1.39235 * 120.14681 * 359.75372 * 4 3 2 7 7 C 1.36576 * 120.20502 * 0.50155 * 6 4 3 8 8 C 1.39860 * 120.10111 * 179.97438 * 2 1 3 9 9 C 1.47381 * 120.07608 * 0.04369 * 8 2 1 10 10 O 1.21519 * 119.99365 * 353.74090 * 9 8 2 11 11 O 1.34757 * 120.00421 * 173.73907 * 9 8 2 12 12 C 1.45196 * 117.00415 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47609 * 180.02562 * 12 11 9 14 14 O 1.42897 * 109.47046 * 64.99450 * 13 12 11 15 15 C 1.42898 * 113.99859 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47421 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99652 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00392 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99899 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00294 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47288 * 59.99281 * 20 18 16 22 22 H 1.48500 * 109.47420 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46811 * 299.99543 * 20 18 16 24 24 H 1.08998 * 109.47318 * 263.43172 * 1 2 3 25 25 H 1.08999 * 109.47044 * 23.43533 * 1 2 3 26 26 H 1.09003 * 109.46846 * 143.42715 * 1 2 3 27 27 H 1.07999 * 120.02949 * 359.95573 * 3 2 1 28 28 H 0.96996 * 119.99674 * 0.02562 * 5 4 3 29 29 H 0.96994 * 119.99827 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.90074 * 180.27214 * 6 4 3 31 31 H 1.07995 * 119.97680 * 179.76985 * 7 6 4 32 32 H 1.09008 * 109.46759 * 300.00142 * 12 11 9 33 33 H 1.09001 * 109.47246 * 59.99939 * 12 11 9 34 34 H 1.08995 * 109.47032 * 184.99976 * 13 12 11 35 35 H 1.09007 * 109.46556 * 305.00081 * 13 12 11 36 36 H 1.09007 * 109.46895 * 300.00193 * 15 14 13 37 37 H 1.08997 * 109.47721 * 60.00200 * 15 14 13 38 38 H 0.97002 * 120.00328 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1908 0.0000 4 6 3.5897 1.1871 0.0005 5 7 4.2864 2.3900 0.0011 6 6 4.2857 -0.0188 0.0063 7 6 3.6070 -1.2039 0.0010 8 6 2.2084 -1.2100 0.0005 9 6 1.4754 -2.4886 0.0001 10 8 0.2656 -2.4953 0.1141 11 8 2.1468 -3.6501 -0.1266 12 6 1.3601 -4.8705 -0.1193 13 6 2.2886 -6.0769 -0.2721 14 8 3.1410 -6.1697 0.8711 15 6 4.0530 -7.2689 0.8283 16 6 4.8972 -7.2702 2.0767 17 1 4.7520 -6.5075 2.8275 18 6 5.8556 -8.2443 2.2599 19 7 6.0327 -9.1727 1.3454 20 14 6.9015 -8.2462 3.8076 21 1 6.0237 -8.3781 4.9981 22 1 7.8503 -9.3878 3.7625 23 1 7.6626 -6.9738 3.8923 24 1 -0.3634 -0.1175 1.0209 25 1 -0.3633 0.9429 -0.4087 26 1 -0.3633 -0.8253 -0.6124 27 1 1.6593 2.1273 -0.0007 28 1 3.8024 3.2307 0.0015 29 1 5.2563 2.3887 0.0011 30 1 5.3657 -0.0170 0.0111 31 1 4.1506 -2.1371 0.0017 32 1 0.8173 -4.9472 0.8229 33 1 0.6507 -4.8505 -0.9467 34 1 1.6927 -6.9857 -0.3558 35 1 2.8959 -5.9566 -1.1693 36 1 3.4940 -8.2027 0.7672 37 1 4.6969 -7.1731 -0.0459 38 1 6.7072 -9.8578 1.4741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385831078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:50 Heat of formation + Delta-G solvation = -114.735358 kcal Electronic energy + Delta-G solvation = -20831.077330 eV Core-core repulsion = 17445.339117 eV Total energy + Delta-G solvation = -3385.738213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49681 -39.12261 -36.99459 -35.97690 -34.93079 -32.76876 -32.48549 -30.29831 -29.15216 -27.30327 -26.81490 -23.62872 -22.57303 -22.26359 -21.53992 -20.62354 -17.86398 -17.23176 -16.75804 -16.61078 -16.35036 -16.24882 -15.27888 -14.79040 -14.49239 -14.34213 -14.22712 -13.86617 -13.54959 -13.22506 -12.86243 -12.77119 -12.58329 -12.36822 -12.09426 -11.88470 -11.37608 -11.10055 -10.88358 -10.80868 -10.70676 -10.68133 -10.26537 -10.05774 -9.85880 -9.11437 -8.94384 -8.84096 -8.18234 -7.84664 -6.09903 -4.11504 0.89431 1.33495 2.74441 2.97543 3.33614 3.35962 3.40202 3.50125 3.79279 4.34787 4.64871 4.74726 4.78960 4.95743 5.11867 5.26566 5.30602 5.33218 5.39090 5.55030 5.64801 5.73812 5.85774 5.93268 5.96372 6.03647 6.11865 6.17222 6.27646 6.48785 6.60871 6.81657 7.08591 7.13180 7.36123 7.42682 7.80220 8.06817 8.15315 8.56064 9.01215 9.53187 11.01657 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.003576 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.023281 B = 7828.430024 C = 8988.320356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.031 3.969 3 C -0.222 4.222 4 C 0.252 3.748 5 N -0.868 5.868 6 C -0.218 4.218 7 C -0.002 4.002 8 C -0.191 4.191 9 C 0.511 3.489 10 O -0.520 6.520 11 O -0.340 6.340 12 C 0.076 3.924 13 C 0.062 3.938 14 O -0.390 6.390 15 C 0.195 3.805 16 C -0.515 4.515 17 H 0.066 0.934 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.126 0.874 28 H 0.399 0.601 29 H 0.401 0.599 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.603 21.707 -5.665 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.030 3.970 3 C -0.245 4.245 4 C 0.145 3.855 5 N -0.405 5.405 6 C -0.241 4.241 7 C -0.021 4.021 8 C -0.195 4.195 9 C 0.358 3.642 10 O -0.412 6.412 11 O -0.256 6.256 12 C 0.003 3.997 13 C -0.016 4.016 14 O -0.310 6.310 15 C 0.120 3.880 16 C -0.553 4.553 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.113 0.887 27 H 0.144 0.856 28 H 0.228 0.772 29 H 0.230 0.770 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.849 21.591 -5.519 23.314 hybrid contribution 0.802 -0.068 0.538 0.968 sum -6.048 21.523 -4.981 22.904 Atomic orbital electron populations 1.21132 0.90125 1.02929 1.03803 1.19720 0.96361 0.90729 0.90182 1.20325 0.91672 0.97855 1.14606 1.18024 0.91411 0.86604 0.89489 1.42469 1.09361 1.05333 1.83355 1.20338 1.00068 0.90805 1.12849 1.21073 0.92755 0.98793 0.89508 1.18734 0.93476 0.89928 1.17326 1.21052 0.85797 0.84663 0.72667 1.90741 1.15168 1.87941 1.47392 1.86639 1.41403 1.14611 1.82906 1.23168 0.93258 0.80635 1.02688 1.22324 0.93408 0.94257 0.91604 1.87920 1.51228 1.52740 1.39145 1.20222 0.86833 0.83266 0.97635 1.21024 1.17605 1.12437 1.04263 0.91544 1.24941 0.97139 0.95070 0.97309 1.69950 1.34336 1.15215 1.34361 0.86389 0.79770 0.77573 0.82707 1.20000 1.21165 1.19989 0.90386 0.92399 0.88678 0.85572 0.77235 0.77037 0.85412 0.83914 0.90567 0.90519 0.92031 0.93244 0.97655 0.97520 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.73 36.00 0.31 -1.08 16 2 C 0.03 0.39 5.91 -104.24 -0.62 -0.23 16 3 C -0.22 -2.24 9.51 -39.42 -0.37 -2.62 16 4 C 0.25 2.41 6.75 -83.86 -0.57 1.85 16 5 N -0.87 -5.16 9.05 32.41 0.29 -4.87 16 6 C -0.22 -2.38 9.82 -39.81 -0.39 -2.77 16 7 C 0.00 -0.03 9.55 -39.57 -0.38 -0.41 16 8 C -0.19 -2.75 5.88 -104.96 -0.62 -3.37 16 9 C 0.51 8.46 7.82 34.45 0.27 8.73 16 10 O -0.52 -8.99 13.13 -19.28 -0.25 -9.24 16 11 O -0.34 -6.05 9.45 -43.43 -0.41 -6.46 16 12 C 0.08 1.27 5.85 37.16 0.22 1.49 16 13 C 0.06 1.16 6.33 37.16 0.24 1.39 16 14 O -0.39 -9.64 10.30 -38.80 -0.40 -10.03 16 15 C 0.19 5.38 5.69 36.01 0.20 5.59 16 16 C -0.52 -15.34 9.43 -34.44 -0.32 -15.66 16 17 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 20 Si 0.91 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 26 H 0.09 1.23 5.86 -51.93 -0.30 0.93 16 27 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.40 1.59 8.83 -40.82 -0.36 1.22 16 29 H 0.40 1.75 8.83 -40.82 -0.36 1.39 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.14 1.97 7.61 -52.49 -0.40 1.57 16 32 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -33.94 331.19 -7.38 -41.31 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.19 Total: -0.85 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.12 Total: -5.54 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 1.03 Total: -31.12 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.06 Total: -25.73 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.94 -7.38 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385831078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.420 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds