Wall clock time and date at job start Fri Apr 10 2020 17:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37639 * 120.09910 * 2 1 4 4 C 1.39248 * 119.94636 * 179.97438 * 3 2 1 5 5 N 1.39010 * 119.92388 * 180.02562 * 4 3 2 6 6 C 1.39235 * 120.14681 * 359.75372 * 4 3 2 7 7 C 1.36576 * 120.20502 * 0.50155 * 6 4 3 8 8 C 1.39860 * 120.10111 * 179.97438 * 2 1 3 9 9 C 1.47381 * 120.07608 * 0.04369 * 8 2 1 10 10 O 1.21519 * 119.99365 * 353.74090 * 9 8 2 11 11 O 1.34757 * 120.00421 * 173.73907 * 9 8 2 12 12 C 1.45196 * 117.00415 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47609 * 180.02562 * 12 11 9 14 14 O 1.42897 * 109.47046 * 64.99450 * 13 12 11 15 15 C 1.42898 * 113.99859 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47421 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99652 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00392 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99899 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00294 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47288 * 59.99281 * 20 18 16 22 22 H 1.48500 * 109.47420 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46811 * 299.99543 * 20 18 16 24 24 H 1.08998 * 109.47318 * 263.43172 * 1 2 3 25 25 H 1.08999 * 109.47044 * 23.43533 * 1 2 3 26 26 H 1.09003 * 109.46846 * 143.42715 * 1 2 3 27 27 H 1.07999 * 120.02949 * 359.95573 * 3 2 1 28 28 H 0.96996 * 119.99674 * 0.02562 * 5 4 3 29 29 H 0.96994 * 119.99827 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.90074 * 180.27214 * 6 4 3 31 31 H 1.07995 * 119.97680 * 179.76985 * 7 6 4 32 32 H 1.09008 * 109.46759 * 300.00142 * 12 11 9 33 33 H 1.09001 * 109.47246 * 59.99939 * 12 11 9 34 34 H 1.08995 * 109.47032 * 184.99976 * 13 12 11 35 35 H 1.09007 * 109.46556 * 305.00081 * 13 12 11 36 36 H 1.09007 * 109.46895 * 300.00193 * 15 14 13 37 37 H 1.08997 * 109.47721 * 60.00200 * 15 14 13 38 38 H 0.97002 * 120.00328 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1908 0.0000 4 6 3.5897 1.1871 0.0005 5 7 4.2864 2.3900 0.0011 6 6 4.2857 -0.0188 0.0063 7 6 3.6070 -1.2039 0.0010 8 6 2.2084 -1.2100 0.0005 9 6 1.4754 -2.4886 0.0001 10 8 0.2656 -2.4953 0.1141 11 8 2.1468 -3.6501 -0.1266 12 6 1.3601 -4.8705 -0.1193 13 6 2.2886 -6.0769 -0.2721 14 8 3.1410 -6.1697 0.8711 15 6 4.0530 -7.2689 0.8283 16 6 4.8972 -7.2702 2.0767 17 1 4.7520 -6.5075 2.8275 18 6 5.8556 -8.2443 2.2599 19 7 6.0327 -9.1727 1.3454 20 14 6.9015 -8.2462 3.8076 21 1 6.0237 -8.3781 4.9981 22 1 7.8503 -9.3878 3.7625 23 1 7.6626 -6.9738 3.8923 24 1 -0.3634 -0.1175 1.0209 25 1 -0.3633 0.9429 -0.4087 26 1 -0.3633 -0.8253 -0.6124 27 1 1.6593 2.1273 -0.0007 28 1 3.8024 3.2307 0.0015 29 1 5.2563 2.3887 0.0011 30 1 5.3657 -0.0170 0.0111 31 1 4.1506 -2.1371 0.0017 32 1 0.8173 -4.9472 0.8229 33 1 0.6507 -4.8505 -0.9467 34 1 1.6927 -6.9857 -0.3558 35 1 2.8959 -5.9566 -1.1693 36 1 3.4940 -8.2027 0.7672 37 1 4.6969 -7.1731 -0.0459 38 1 6.7072 -9.8578 1.4741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385831078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:49 Heat of formation + Delta-G solvation = -137.164850 kcal Electronic energy + Delta-G solvation = -20832.049946 eV Core-core repulsion = 17445.339117 eV Total energy + Delta-G solvation = -3386.710829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.63757 -40.12608 -38.70522 -37.41001 -35.74434 -34.94919 -33.40817 -31.76074 -30.15931 -28.99160 -28.10841 -24.80211 -24.46670 -23.63146 -22.69274 -21.67627 -18.99332 -18.69461 -18.03118 -17.89114 -17.58116 -17.47324 -17.00667 -16.37959 -16.26062 -15.56345 -15.35165 -14.92657 -14.88918 -14.33199 -14.08114 -14.01246 -13.70737 -13.54161 -13.40780 -13.22503 -13.04082 -12.88550 -12.67796 -12.42603 -12.01171 -11.92546 -11.68072 -11.52574 -11.29588 -11.07347 -10.88309 -10.27176 -9.82424 -8.59825 -8.32189 -6.44665 -0.09095 0.46277 1.40206 1.45067 1.53527 1.62394 1.76035 2.34753 2.85163 2.89787 3.01551 3.07342 3.75989 3.81168 3.95554 3.96261 4.12205 4.27171 4.41329 4.44775 4.53484 4.57034 4.67697 4.82831 4.84651 4.85337 4.98684 5.17043 5.19052 5.26521 5.30272 5.49002 5.54083 5.69208 5.78884 5.95018 6.45955 6.49932 6.78352 6.82845 6.91783 7.26933 8.79916 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.003576 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.023281 B = 7828.430024 C = 8988.320356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.024 3.976 3 C -0.220 4.220 4 C 0.264 3.736 5 N -0.847 5.847 6 C -0.223 4.223 7 C -0.016 4.016 8 C -0.225 4.225 9 C 0.505 3.495 10 O -0.536 6.536 11 O -0.359 6.359 12 C 0.080 3.920 13 C 0.055 3.945 14 O -0.409 6.409 15 C 0.208 3.792 16 C -0.552 4.552 17 H 0.059 0.941 18 C 0.008 3.992 19 N -0.929 5.929 20 Si 0.983 3.017 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.265 1.265 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.157 0.843 28 H 0.413 0.587 29 H 0.412 0.588 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.056 0.944 36 H -0.008 1.008 37 H -0.011 1.011 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 24.124 -5.151 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.023 3.977 3 C -0.242 4.242 4 C 0.154 3.846 5 N -0.384 5.384 6 C -0.246 4.246 7 C -0.036 4.036 8 C -0.228 4.228 9 C 0.354 3.646 10 O -0.429 6.429 11 O -0.276 6.276 12 C 0.006 3.994 13 C -0.022 4.022 14 O -0.330 6.330 15 C 0.134 3.866 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.190 4.190 19 N -0.568 5.568 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.190 1.190 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.175 0.825 28 H 0.244 0.756 29 H 0.243 0.757 30 H 0.164 0.836 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.010 0.990 37 H 0.007 0.993 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.158 24.057 -5.022 25.336 hybrid contribution 0.593 -0.675 0.297 0.946 sum -5.564 23.383 -4.725 24.495 Atomic orbital electron populations 1.21075 0.89650 1.03642 1.03204 1.19918 0.96892 0.90761 0.90135 1.20612 0.91994 0.98127 1.13498 1.18072 0.91521 0.87299 0.87727 1.42479 1.10115 1.04718 1.81081 1.20518 1.01028 0.90530 1.12477 1.21000 0.92537 0.99218 0.90815 1.18803 0.93969 0.89546 1.20523 1.21543 0.85900 0.84887 0.72236 1.90719 1.15648 1.88076 1.48491 1.86634 1.42256 1.15329 1.83334 1.23152 0.92826 0.79788 1.03619 1.22639 0.93257 0.96362 0.89929 1.87869 1.51580 1.51589 1.41915 1.19866 0.86807 0.83580 0.96395 1.21363 1.19244 1.13238 1.05141 0.92233 1.25939 0.98025 0.94101 1.00963 1.70052 1.34869 1.15635 1.36280 0.85246 0.77939 0.78257 0.78049 1.19104 1.19773 1.18996 0.90944 0.89423 0.90798 0.82502 0.75572 0.75749 0.83607 0.85713 0.91227 0.87462 0.89948 0.92623 0.99035 0.99285 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 8.73 71.23 0.62 -1.98 16 2 C 0.02 0.58 5.91 -19.61 -0.12 0.46 16 3 C -0.22 -3.85 9.51 22.37 0.21 -3.64 16 4 C 0.26 4.34 6.75 38.49 0.26 4.60 16 5 N -0.85 -6.81 9.05 -51.37 -0.47 -7.28 16 6 C -0.22 -4.58 9.82 22.12 0.22 -4.36 16 7 C -0.02 -0.45 9.55 22.27 0.21 -0.23 16 8 C -0.23 -6.64 5.88 -20.08 -0.12 -6.76 16 9 C 0.51 17.46 7.82 70.23 0.55 18.01 16 10 O -0.54 -19.16 13.13 19.77 0.26 -18.90 16 11 O -0.36 -13.36 9.45 -54.01 -0.51 -13.87 16 12 C 0.08 2.71 5.85 71.98 0.42 3.13 16 13 C 0.05 2.11 6.33 71.98 0.46 2.56 16 14 O -0.41 -20.92 10.30 -145.57 -1.50 -22.42 16 15 C 0.21 11.95 5.69 71.24 0.41 12.36 16 16 C -0.55 -33.66 9.43 25.60 0.24 -33.42 16 17 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 18 C 0.01 0.49 5.46 84.65 0.46 0.95 16 19 N -0.93 -56.20 13.29 21.44 0.28 -55.92 16 20 Si 0.98 44.82 29.54 68.60 2.03 46.85 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.09 1.32 8.04 -2.39 -0.02 1.30 16 26 H 0.07 1.94 5.86 -2.39 -0.01 1.93 16 27 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 28 H 0.41 1.46 8.83 -92.71 -0.82 0.64 16 29 H 0.41 2.02 8.83 -92.71 -0.82 1.20 16 30 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.12 3.73 7.61 -2.91 -0.02 3.70 16 32 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 33 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 36 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 37 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -74.76 331.19 3.37 -71.39 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -0.55 Total: 8.46 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 3.83 Total: -8.32 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.18 Total: -63.19 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -1.75 Total: -55.19 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -74.76 3.37 -71.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385831078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.778 kcal (2) G-P(sol) polarization free energy of solvation -74.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds