Wall clock time and date at job start Fri Apr 10 2020 17:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38665 * 120.11763 * 2 1 4 4 N 1.39719 * 120.00365 * 0.02562 * 3 2 1 5 5 C 1.38991 * 119.99745 * 180.28023 * 3 2 1 6 6 C 1.38250 * 120.23091 * 359.73341 * 5 3 2 7 7 C 1.37967 * 120.23056 * 0.03272 * 6 5 3 8 8 C 1.39506 * 120.11733 * 179.78430 * 2 1 3 9 9 C 1.47750 * 120.11217 * 0.02562 * 8 2 1 10 10 O 1.21469 * 119.99795 * 353.55905 * 9 8 2 11 11 O 1.34706 * 119.99970 * 173.56482 * 9 8 2 12 12 C 1.45203 * 116.99783 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46881 * 179.97438 * 12 11 9 14 14 O 1.42894 * 109.47083 * 65.00142 * 13 12 11 15 15 C 1.42898 * 114.00152 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47328 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99856 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00066 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00291 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99946 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47240 * 60.00495 * 20 18 16 22 22 H 1.48503 * 109.47018 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47333 * 300.00309 * 20 18 16 24 24 H 1.09000 * 109.47189 * 263.71691 * 1 2 3 25 25 H 1.09000 * 109.46729 * 23.71007 * 1 2 3 26 26 H 1.08994 * 109.47061 * 143.71004 * 1 2 3 27 27 H 0.96996 * 119.99961 * 180.26382 * 4 3 2 28 28 H 0.97004 * 119.99535 * 0.25438 * 4 3 2 29 29 H 1.08003 * 119.88631 * 179.72120 * 5 3 2 30 30 H 1.07999 * 119.88651 * 180.02562 * 6 5 3 31 31 H 1.08004 * 120.00081 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47206 * 300.00080 * 12 11 9 33 33 H 1.09002 * 109.47274 * 60.00048 * 12 11 9 34 34 H 1.08995 * 109.46752 * 184.99753 * 13 12 11 35 35 H 1.08998 * 109.47049 * 305.00109 * 13 12 11 36 36 H 1.08998 * 109.46658 * 299.99893 * 15 14 13 37 37 H 1.08992 * 109.47324 * 60.00110 * 15 14 13 38 38 H 0.96994 * 120.00192 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2028 1.1994 0.0000 4 7 1.5068 2.4109 0.0005 5 6 3.5927 1.1965 -0.0059 6 6 4.2863 0.0006 -0.0062 7 6 3.6036 -1.1983 -0.0013 8 6 2.2070 -1.2067 0.0045 9 6 1.4734 -2.4892 0.0088 10 8 0.2645 -2.4969 0.1264 11 8 2.1453 -3.6499 -0.1176 12 6 1.3598 -4.8710 -0.1045 13 6 2.2889 -6.0768 -0.2590 14 8 3.1463 -6.1666 0.8806 15 6 4.0586 -7.2655 0.8364 16 6 4.9091 -7.2627 2.0805 17 1 4.7669 -6.4983 2.8302 18 6 5.8680 -8.2365 2.2623 19 7 6.0410 -9.1676 1.3496 20 14 6.9227 -8.2326 3.8040 21 1 6.0516 -8.3594 5.0000 22 1 7.8707 -9.3748 3.7582 23 1 7.6847 -6.9602 3.8794 24 1 -0.3633 -0.1125 1.0215 25 1 -0.3633 0.9409 -0.4132 26 1 -0.3633 -0.8283 -0.6082 27 1 1.9936 3.2499 -0.0033 28 1 0.5368 2.4129 0.0046 29 1 4.1328 2.1318 -0.0104 30 1 5.3663 0.0048 -0.0104 31 1 4.1492 -2.1304 -0.0020 32 1 0.8206 -4.9461 0.8398 33 1 0.6474 -4.8537 -0.9293 34 1 1.6936 -6.9863 -0.3383 35 1 2.8921 -5.9576 -1.1591 36 1 3.4997 -8.1996 0.7801 37 1 4.6986 -7.1715 -0.0408 38 1 6.7154 -9.8529 1.4777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385862766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:55 Heat of formation + Delta-G solvation = -109.168831 kcal Electronic energy + Delta-G solvation = -20909.361117 eV Core-core repulsion = 17523.864286 eV Total energy + Delta-G solvation = -3385.496830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61702 -39.17472 -37.01022 -35.98892 -34.82573 -32.75265 -32.52296 -30.35293 -29.13155 -27.10558 -26.83745 -24.24861 -22.45583 -22.10700 -21.29438 -20.81753 -18.09280 -17.25859 -16.83281 -16.44052 -16.38173 -15.71477 -15.35798 -15.29151 -14.68808 -14.35127 -14.18126 -13.97261 -13.65691 -13.36884 -12.83025 -12.64340 -12.40246 -12.32787 -11.93571 -11.85360 -11.42170 -11.23725 -10.90348 -10.82967 -10.81344 -10.70972 -10.33848 -10.07947 -9.94167 -9.12281 -8.97364 -8.85212 -8.19252 -7.69689 -6.10231 -4.11929 0.70229 1.42573 2.66039 2.79887 3.33730 3.36074 3.40302 3.63689 3.76284 4.34201 4.63625 4.70669 4.76928 4.92991 4.98605 5.26242 5.26671 5.30834 5.46526 5.50078 5.59247 5.64315 5.68657 5.89876 5.94786 6.04781 6.09327 6.14114 6.39726 6.40552 6.60417 6.73329 7.07401 7.20919 7.41750 7.48143 7.79702 7.92861 8.14466 8.54686 9.00611 9.52811 11.01307 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003433 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.070193 B = 8153.766029 C = 9060.142281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C 0.197 3.803 4 N -0.879 5.879 5 C -0.163 4.163 6 C -0.091 4.091 7 C -0.109 4.109 8 C -0.081 4.081 9 C 0.506 3.494 10 O -0.510 6.510 11 O -0.334 6.334 12 C 0.075 3.925 13 C 0.062 3.938 14 O -0.390 6.390 15 C 0.195 3.805 16 C -0.515 4.515 17 H 0.066 0.934 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.909 3.091 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.397 0.603 28 H 0.398 0.602 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 21.215 -5.684 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C 0.094 3.906 4 N -0.421 5.421 5 C -0.186 4.186 6 C -0.110 4.110 7 C -0.129 4.129 8 C -0.083 4.083 9 C 0.352 3.648 10 O -0.401 6.401 11 O -0.250 6.250 12 C 0.002 3.998 13 C -0.016 4.016 14 O -0.310 6.310 15 C 0.120 3.880 16 C -0.553 4.553 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.226 0.774 28 H 0.228 0.772 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.159 0.841 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.803 21.079 -5.538 23.505 hybrid contribution 0.385 -0.069 0.532 0.660 sum -8.418 21.010 -5.006 23.181 Atomic orbital electron populations 1.20900 0.90250 1.02304 1.03385 1.19390 0.96397 0.90186 1.04428 1.17359 0.91137 0.85980 0.96143 1.42490 1.09085 1.04670 1.85848 1.20808 0.91831 0.98947 1.06987 1.20899 1.00150 0.91391 0.98545 1.21390 0.92612 0.99461 0.99449 1.18737 0.93565 0.89428 1.06585 1.21193 0.85779 0.84894 0.72928 1.90745 1.15142 1.87971 1.46264 1.86651 1.41349 1.14523 1.82495 1.23223 0.93324 0.80481 1.02797 1.22322 0.93367 0.94175 0.91739 1.87920 1.50964 1.52758 1.39393 1.20227 0.86815 0.83236 0.97673 1.21020 1.17416 1.12378 1.04521 0.91534 1.24943 0.97153 0.95060 0.97307 1.69952 1.34398 1.15102 1.34409 0.86386 0.79804 0.77595 0.82643 1.20012 1.21169 1.19953 0.90964 0.93097 0.88861 0.77441 0.77171 0.85799 0.85108 0.84055 0.90435 0.90405 0.91941 0.93168 0.97640 0.97486 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.43 36.01 0.30 -0.93 16 2 C -0.10 -1.22 5.93 -103.99 -0.62 -1.84 16 3 C 0.20 2.02 6.73 -83.83 -0.56 1.45 16 4 N -0.88 -6.02 8.99 32.39 0.29 -5.73 16 5 C -0.16 -1.57 9.89 -39.30 -0.39 -1.96 16 6 C -0.09 -0.98 10.02 -39.68 -0.40 -1.38 16 7 C -0.11 -1.45 9.61 -39.15 -0.38 -1.82 16 8 C -0.08 -1.16 5.87 -105.01 -0.62 -1.78 16 9 C 0.51 8.22 7.83 34.62 0.27 8.49 16 10 O -0.51 -8.59 13.14 -19.24 -0.25 -8.84 16 11 O -0.33 -5.85 9.46 -43.29 -0.41 -6.26 16 12 C 0.08 1.23 5.85 37.16 0.22 1.45 16 13 C 0.06 1.14 6.33 37.16 0.24 1.38 16 14 O -0.39 -9.56 10.30 -38.80 -0.40 -9.96 16 15 C 0.19 5.36 5.69 36.01 0.20 5.56 16 16 C -0.52 -15.29 9.43 -34.44 -0.32 -15.62 16 17 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 20 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.42 6.24 -51.93 -0.32 0.09 16 26 H 0.09 1.19 5.85 -51.93 -0.30 0.89 16 27 H 0.40 1.83 8.84 -40.82 -0.36 1.47 16 28 H 0.40 2.31 6.69 -40.82 -0.27 2.04 16 29 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.14 1.97 7.62 -52.48 -0.40 1.57 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -33.53 327.57 -7.28 -40.81 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.01 Total: -0.19 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.15 Total: -5.47 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 1.03 Total: -31.94 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.06 Total: -25.06 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.53 -7.28 -40.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385862766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.361 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds