Wall clock time and date at job start Fri Apr 10 2020 17:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38665 * 120.11763 * 2 1 4 4 N 1.39719 * 120.00365 * 0.02562 * 3 2 1 5 5 C 1.38991 * 119.99745 * 180.28023 * 3 2 1 6 6 C 1.38250 * 120.23091 * 359.73341 * 5 3 2 7 7 C 1.37967 * 120.23056 * 0.03272 * 6 5 3 8 8 C 1.39506 * 120.11733 * 179.78430 * 2 1 3 9 9 C 1.47750 * 120.11217 * 0.02562 * 8 2 1 10 10 O 1.21469 * 119.99795 * 353.55905 * 9 8 2 11 11 O 1.34706 * 119.99970 * 173.56482 * 9 8 2 12 12 C 1.45203 * 116.99783 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46881 * 179.97438 * 12 11 9 14 14 O 1.42894 * 109.47083 * 65.00142 * 13 12 11 15 15 C 1.42898 * 114.00152 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47328 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99856 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00066 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00291 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99946 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47240 * 60.00495 * 20 18 16 22 22 H 1.48503 * 109.47018 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47333 * 300.00309 * 20 18 16 24 24 H 1.09000 * 109.47189 * 263.71691 * 1 2 3 25 25 H 1.09000 * 109.46729 * 23.71007 * 1 2 3 26 26 H 1.08994 * 109.47061 * 143.71004 * 1 2 3 27 27 H 0.96996 * 119.99961 * 180.26382 * 4 3 2 28 28 H 0.97004 * 119.99535 * 0.25438 * 4 3 2 29 29 H 1.08003 * 119.88631 * 179.72120 * 5 3 2 30 30 H 1.07999 * 119.88651 * 180.02562 * 6 5 3 31 31 H 1.08004 * 120.00081 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47206 * 300.00080 * 12 11 9 33 33 H 1.09002 * 109.47274 * 60.00048 * 12 11 9 34 34 H 1.08995 * 109.46752 * 184.99753 * 13 12 11 35 35 H 1.08998 * 109.47049 * 305.00109 * 13 12 11 36 36 H 1.08998 * 109.46658 * 299.99893 * 15 14 13 37 37 H 1.08992 * 109.47324 * 60.00110 * 15 14 13 38 38 H 0.96994 * 120.00192 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2028 1.1994 0.0000 4 7 1.5068 2.4109 0.0005 5 6 3.5927 1.1965 -0.0059 6 6 4.2863 0.0006 -0.0062 7 6 3.6036 -1.1983 -0.0013 8 6 2.2070 -1.2067 0.0045 9 6 1.4734 -2.4892 0.0088 10 8 0.2645 -2.4969 0.1264 11 8 2.1453 -3.6499 -0.1176 12 6 1.3598 -4.8710 -0.1045 13 6 2.2889 -6.0768 -0.2590 14 8 3.1463 -6.1666 0.8806 15 6 4.0586 -7.2655 0.8364 16 6 4.9091 -7.2627 2.0805 17 1 4.7669 -6.4983 2.8302 18 6 5.8680 -8.2365 2.2623 19 7 6.0410 -9.1676 1.3496 20 14 6.9227 -8.2326 3.8040 21 1 6.0516 -8.3594 5.0000 22 1 7.8707 -9.3748 3.7582 23 1 7.6847 -6.9602 3.8794 24 1 -0.3633 -0.1125 1.0215 25 1 -0.3633 0.9409 -0.4132 26 1 -0.3633 -0.8283 -0.6082 27 1 1.9936 3.2499 -0.0033 28 1 0.5368 2.4129 0.0046 29 1 4.1328 2.1318 -0.0104 30 1 5.3663 0.0048 -0.0104 31 1 4.1492 -2.1304 -0.0020 32 1 0.8206 -4.9461 0.8398 33 1 0.6474 -4.8537 -0.9293 34 1 1.6936 -6.9863 -0.3383 35 1 2.8921 -5.9576 -1.1591 36 1 3.4997 -8.1996 0.7801 37 1 4.6986 -7.1715 -0.0408 38 1 6.7154 -9.8529 1.4777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385862766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:54 Heat of formation + Delta-G solvation = -131.064498 kcal Electronic energy + Delta-G solvation = -20910.310584 eV Core-core repulsion = 17523.864286 eV Total energy + Delta-G solvation = -3386.446298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76057 -40.17443 -38.71472 -37.44331 -35.60958 -34.94191 -33.41842 -31.80918 -30.14659 -28.98627 -27.89508 -25.35047 -24.53584 -23.51886 -22.24716 -21.91766 -19.13852 -18.70180 -18.11534 -17.94575 -17.76669 -17.05853 -16.63546 -16.40929 -16.37133 -16.11298 -15.22252 -15.06515 -14.97823 -14.41374 -14.16635 -14.08777 -13.70181 -13.37863 -13.22289 -13.20126 -12.91248 -12.78201 -12.67936 -12.43901 -12.12500 -11.97688 -11.72768 -11.64083 -11.30024 -11.13857 -10.88719 -10.27430 -9.87260 -8.44740 -8.32087 -6.44504 -0.28437 0.54664 1.40536 1.45331 1.53716 1.54008 1.61093 2.34870 2.83494 2.99298 3.01701 3.06142 3.58785 3.86552 3.92265 4.06209 4.09863 4.11242 4.39530 4.45000 4.51424 4.60992 4.68522 4.77030 4.78861 4.80987 4.85100 5.15746 5.18006 5.21842 5.38068 5.51476 5.54113 5.57534 5.83534 5.95039 6.49559 6.52939 6.68562 6.79389 7.00242 7.27074 8.79971 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003433 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.070193 B = 8153.766029 C = 9060.142281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.115 4.115 3 C 0.203 3.797 4 N -0.863 5.863 5 C -0.156 4.156 6 C -0.089 4.089 7 C -0.131 4.131 8 C -0.106 4.106 9 C 0.502 3.498 10 O -0.523 6.523 11 O -0.353 6.353 12 C 0.078 3.922 13 C 0.054 3.946 14 O -0.409 6.409 15 C 0.208 3.792 16 C -0.552 4.552 17 H 0.059 0.941 18 C 0.008 3.992 19 N -0.929 5.929 20 Si 0.982 3.018 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.265 1.265 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.412 0.588 28 H 0.405 0.595 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.056 0.944 36 H -0.008 1.008 37 H -0.010 1.010 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 23.494 -5.196 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.120 4.120 3 C 0.097 3.903 4 N -0.406 5.406 5 C -0.178 4.178 6 C -0.108 4.108 7 C -0.152 4.152 8 C -0.107 4.107 9 C 0.349 3.651 10 O -0.415 6.415 11 O -0.270 6.270 12 C 0.005 3.995 13 C -0.022 4.022 14 O -0.330 6.330 15 C 0.134 3.866 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.190 4.190 19 N -0.568 5.568 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.190 1.190 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.243 0.757 28 H 0.236 0.764 29 H 0.177 0.823 30 H 0.171 0.829 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.010 0.990 37 H 0.007 0.993 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.367 23.400 -5.066 25.362 hybrid contribution 0.182 -0.672 0.300 0.758 sum -8.184 22.727 -4.767 24.622 Atomic orbital electron populations 1.20832 0.89707 1.03078 1.02749 1.19563 0.96986 0.90359 1.05135 1.17461 0.91621 0.86302 0.94912 1.42465 1.09567 1.04141 1.84428 1.21186 0.91726 0.99822 1.05096 1.21165 1.01306 0.90832 0.97461 1.21347 0.92430 0.99964 1.01453 1.18811 0.94033 0.89073 1.08819 1.21655 0.85875 0.85118 0.72434 1.90727 1.15556 1.88110 1.47095 1.86645 1.42216 1.15252 1.82872 1.23221 0.92879 0.79540 1.03840 1.22645 0.93207 0.96341 0.90051 1.87868 1.51332 1.51585 1.42182 1.19866 0.86805 0.83580 0.96393 1.21361 1.19034 1.13145 1.05413 0.92225 1.25939 0.98083 0.94116 1.00909 1.70052 1.34946 1.15531 1.36307 0.85248 0.77939 0.78255 0.78068 1.19103 1.19813 1.18986 0.91614 0.90097 0.90923 0.75727 0.76381 0.82341 0.82948 0.85972 0.90978 0.87224 0.89822 0.92566 0.98994 0.99265 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 8.43 71.24 0.60 -1.70 16 2 C -0.12 -2.76 5.93 -19.45 -0.12 -2.88 16 3 C 0.20 3.65 6.73 38.17 0.26 3.91 16 4 N -0.86 -8.91 8.99 -51.44 -0.46 -9.37 16 5 C -0.16 -2.55 9.89 22.45 0.22 -2.33 16 6 C -0.09 -1.80 10.02 22.21 0.22 -1.57 16 7 C -0.13 -3.58 9.61 22.55 0.22 -3.36 16 8 C -0.11 -3.09 5.87 -20.11 -0.12 -3.21 16 9 C 0.50 16.94 7.83 70.34 0.55 17.49 16 10 O -0.52 -18.11 13.14 19.94 0.26 -17.85 16 11 O -0.35 -12.88 9.46 -53.50 -0.51 -13.38 16 12 C 0.08 2.60 5.85 71.98 0.42 3.02 16 13 C 0.05 2.05 6.33 71.98 0.46 2.50 16 14 O -0.41 -20.73 10.30 -145.57 -1.50 -22.23 16 15 C 0.21 11.89 5.69 71.24 0.41 12.29 16 16 C -0.55 -33.52 9.43 25.60 0.24 -33.28 16 17 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 18 C 0.01 0.48 5.46 84.65 0.46 0.94 16 19 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 20 Si 0.98 44.78 29.54 68.60 2.03 46.81 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.08 1.16 6.24 -2.39 -0.01 1.15 16 26 H 0.07 1.87 5.85 -2.39 -0.01 1.86 16 27 H 0.41 2.13 8.84 -92.71 -0.82 1.31 16 28 H 0.41 3.37 6.69 -92.71 -0.62 2.75 16 29 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.12 3.68 7.62 -2.91 -0.02 3.66 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -73.71 327.57 3.58 -70.13 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -0.35 Total: 9.89 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 3.82 Total: -8.18 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.18 Total: -65.18 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -1.74 Total: -53.46 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -73.71 3.58 -70.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385862766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.935 kcal (2) G-P(sol) polarization free energy of solvation -73.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds