Wall clock time and date at job start Fri Apr 10 2020 17:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35980 * 117.00262 * 2 1 4 4 C 1.38720 * 119.99614 * 0.02562 * 3 2 1 5 5 C 1.38113 * 120.00073 * 180.25246 * 4 3 2 6 6 C 1.38719 * 119.99491 * 359.48805 * 5 4 3 7 7 O 1.35990 * 119.99837 * 180.25634 * 6 5 4 8 8 C 1.42898 * 116.99720 * 0.27312 * 7 6 5 9 9 C 1.50700 * 109.46685 * 179.97438 * 8 7 6 10 10 O 1.21295 * 120.00407 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00154 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99552 * 359.97438 * 11 9 8 13 13 C 1.37090 * 120.00301 * 180.02562 * 11 9 8 14 14 H 1.07998 * 120.00373 * 24.39199 * 13 11 9 15 15 C 1.38956 * 120.00102 * 204.39009 * 13 11 9 16 16 N 1.31413 * 119.99724 * 12.64001 * 15 13 11 17 17 Si 1.86797 * 120.00322 * 192.63427 * 15 13 11 18 18 H 1.48500 * 109.46912 * 90.00292 * 17 15 13 19 19 H 1.48503 * 109.47464 * 210.00290 * 17 15 13 20 20 H 1.48496 * 109.47117 * 330.00693 * 17 15 13 21 21 C 1.38681 * 120.00274 * 0.52991 * 6 5 4 22 22 C 1.38146 * 119.99762 * 359.72673 * 21 6 5 23 23 C 1.50702 * 120.00061 * 179.97438 * 22 21 6 24 24 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46918 * 299.99410 * 1 2 3 26 26 H 1.08997 * 109.47179 * 59.99547 * 1 2 3 27 27 H 1.08004 * 120.00226 * 359.96590 * 4 3 2 28 28 H 1.07999 * 120.00347 * 179.72014 * 5 4 3 29 29 H 1.08993 * 109.47124 * 299.99471 * 8 7 6 30 30 H 1.08998 * 109.47386 * 60.00306 * 8 7 6 31 31 H 1.09006 * 109.46532 * 85.86662 * 12 11 9 32 32 H 1.08998 * 109.46937 * 205.86122 * 12 11 9 33 33 H 1.08999 * 109.47607 * 325.86378 * 12 11 9 34 34 H 0.96996 * 120.00260 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.00129 * 179.74909 * 21 6 5 36 36 H 1.08997 * 109.47077 * 270.01688 * 23 22 21 37 37 H 1.09000 * 109.47076 * 30.02312 * 23 22 21 38 38 H 1.08999 * 109.46930 * 150.01781 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9178 3.6056 -0.0047 6 6 3.3031 3.6781 0.0002 7 8 3.9205 4.8898 0.0003 8 6 3.0805 6.0458 0.0012 9 6 3.9347 7.2873 0.0018 10 8 5.1439 7.1916 0.0010 11 7 3.3552 8.5042 0.0032 12 6 1.8947 8.6198 0.0037 13 6 4.1322 9.6336 0.0032 14 1 5.1397 9.5960 -0.3841 15 6 3.6236 10.8268 0.5015 16 7 2.5066 10.8268 1.1937 17 14 4.5278 12.4310 0.1876 18 1 4.0361 13.0372 -1.0757 19 1 4.2817 13.3667 1.3142 20 1 5.9842 12.1644 0.0746 21 6 4.0584 2.5151 -0.0007 22 6 3.4313 1.2842 -0.0008 23 6 4.2520 0.0203 -0.0024 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 0.2123 2.3184 0.0004 28 1 1.3296 4.5113 -0.0089 29 1 2.4508 6.0381 -0.8884 30 1 2.4518 6.0374 0.8916 31 1 1.5269 8.5735 1.0288 32 1 1.6054 9.5708 -0.4435 33 1 1.4651 7.8012 -0.5738 34 1 2.1517 11.6596 1.5419 35 1 5.1369 2.5716 -0.0010 36 1 4.4491 -0.2837 -1.0304 37 1 5.1966 0.1998 0.5109 38 1 3.7038 -0.7695 0.5112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494840561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:07 Heat of formation + Delta-G solvation = -73.604648 kcal Electronic energy + Delta-G solvation = -21185.778932 eV Core-core repulsion = 17801.824280 eV Total energy + Delta-G solvation = -3383.954652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46561 -39.15661 -38.03421 -36.32071 -34.66078 -32.63865 -31.75532 -29.94806 -28.10638 -27.42625 -26.58699 -26.10465 -24.20000 -22.20080 -21.35230 -19.18002 -18.07220 -17.50450 -16.91005 -16.58061 -15.97969 -15.72358 -15.54370 -14.75446 -14.63379 -14.22854 -14.01605 -13.85885 -13.40363 -13.35583 -13.13345 -12.57433 -12.23118 -12.18935 -11.93203 -11.80450 -11.64822 -11.46413 -11.33256 -11.24218 -10.92725 -10.68071 -10.39362 -10.37122 -10.18591 -9.07081 -8.84034 -8.44832 -7.74642 -7.61195 -6.38601 -3.95393 1.24929 1.52716 3.13628 3.18092 3.22902 3.26542 3.39020 3.72317 3.78291 4.14660 4.68434 4.71526 4.87282 4.97156 4.97878 5.04405 5.12447 5.23993 5.30569 5.37343 5.47524 5.54613 5.59253 5.62749 5.72284 5.85516 5.93444 6.19902 6.24002 6.30794 6.42800 6.64086 6.73626 7.08938 7.27733 7.51939 7.65002 8.07519 8.42137 9.11563 9.31676 9.87678 10.66623 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.040152 B = 0.003253 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.180871 B = 8605.801399 C = 9218.081894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.077 3.923 4 C -0.162 4.162 5 C -0.180 4.180 6 C 0.111 3.889 7 O -0.286 6.286 8 C 0.053 3.947 9 C 0.448 3.552 10 O -0.567 6.567 11 N -0.442 5.442 12 C 0.108 3.892 13 C -0.306 4.306 14 H 0.100 0.900 15 C 0.031 3.969 16 N -0.882 5.882 17 Si 0.929 3.071 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.268 1.268 21 C -0.118 4.118 22 C -0.077 4.077 23 C -0.103 4.103 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.024 0.976 34 H 0.269 0.731 35 H 0.139 0.861 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 -17.325 -2.248 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.033 3.967 4 C -0.181 4.181 5 C -0.199 4.199 6 C 0.064 3.936 7 O -0.198 6.198 8 C -0.026 4.026 9 C 0.235 3.765 10 O -0.450 6.450 11 N -0.163 5.163 12 C -0.036 4.036 13 C -0.434 4.434 14 H 0.118 0.882 15 C -0.172 4.172 16 N -0.521 5.521 17 Si 0.756 3.244 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.137 4.137 22 C -0.078 4.078 23 C -0.160 4.160 24 H 0.114 0.886 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.739 -17.346 -2.150 18.733 hybrid contribution -0.566 1.207 -0.002 1.333 sum -7.305 -16.139 -2.152 17.845 Atomic orbital electron populations 1.22992 0.78967 1.03527 1.01203 1.86032 1.20774 1.26761 1.89612 1.18625 0.91667 0.84112 1.02289 1.20964 0.99730 0.91625 1.05743 1.21110 0.93542 0.98489 1.06766 1.19053 0.90952 0.86138 0.97416 1.86220 1.34538 1.11049 1.87970 1.22589 0.93426 0.84704 1.01900 1.19540 0.88485 0.83627 0.84872 1.90562 1.14165 1.85951 1.54293 1.43467 1.05784 1.03903 1.63153 1.21555 0.80926 1.00397 1.00747 1.19674 0.99300 0.85250 1.39149 0.88215 1.25374 0.96884 1.00011 0.94949 1.69983 1.21109 1.27947 1.33067 0.85871 0.79984 0.80709 0.77851 1.20295 1.20882 1.19243 1.20163 1.00382 0.88502 1.04640 1.18983 0.90507 0.95291 1.03036 1.20609 0.98850 0.94157 1.02373 0.88560 0.92878 0.92892 0.85380 0.85016 0.90729 0.90400 0.92723 0.90260 0.95758 0.92127 0.84335 0.91244 0.91430 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.60 9.54 -19.68 -0.19 -3.79 16 3 C 0.08 1.00 6.66 -39.24 -0.26 0.74 16 4 C -0.16 -2.01 9.03 -39.45 -0.36 -2.37 16 5 C -0.18 -2.55 9.03 -39.45 -0.36 -2.91 16 6 C 0.11 1.83 6.69 -39.24 -0.26 1.57 16 7 O -0.29 -5.74 9.67 -39.62 -0.38 -6.12 16 8 C 0.05 1.02 3.83 36.01 0.14 1.15 16 9 C 0.45 11.28 7.70 -10.98 -0.08 11.20 16 10 O -0.57 -16.58 16.21 -14.36 -0.23 -16.81 16 11 N -0.44 -11.35 3.01 -122.19 -0.37 -11.72 16 12 C 0.11 2.32 8.44 59.85 0.51 2.83 16 13 C -0.31 -8.54 9.24 -14.93 -0.14 -8.68 16 14 H 0.10 2.92 7.45 -52.49 -0.39 2.53 16 15 C 0.03 0.82 5.04 -17.47 -0.09 0.73 16 16 N -0.88 -23.20 10.84 55.50 0.60 -22.60 16 17 Si 0.93 20.60 29.57 -169.99 -5.03 15.57 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C -0.12 -1.75 9.64 -39.45 -0.38 -2.13 16 22 C -0.08 -1.02 5.89 -104.49 -0.62 -1.63 16 23 C -0.10 -1.07 9.79 36.01 0.35 -0.71 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.13 1.24 6.29 -52.48 -0.33 0.91 16 28 H 0.13 1.68 6.29 -52.49 -0.33 1.35 16 29 H 0.07 1.24 6.91 -51.93 -0.36 0.88 16 30 H 0.08 1.35 7.64 -51.93 -0.40 0.96 16 31 H 0.05 1.20 7.83 -51.93 -0.41 0.79 16 32 H 0.08 1.80 6.80 -51.93 -0.35 1.45 16 33 H 0.02 0.42 6.61 -51.93 -0.34 0.08 16 34 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -32.85 320.36 -6.24 -39.10 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.92 Total: 0.57 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.56 Total: 0.98 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.23 Total: -34.31 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.80 Total: -26.72 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.85 -6.24 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494840561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.507 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds