Wall clock time and date at job start Fri Apr 10 2020 17:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35980 * 117.00262 * 2 1 4 4 C 1.38720 * 119.99614 * 0.02562 * 3 2 1 5 5 C 1.38113 * 120.00073 * 180.25246 * 4 3 2 6 6 C 1.38719 * 119.99491 * 359.48805 * 5 4 3 7 7 O 1.35990 * 119.99837 * 180.25634 * 6 5 4 8 8 C 1.42898 * 116.99720 * 0.27312 * 7 6 5 9 9 C 1.50700 * 109.46685 * 179.97438 * 8 7 6 10 10 O 1.21295 * 120.00407 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00154 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99552 * 359.97438 * 11 9 8 13 13 C 1.37090 * 120.00301 * 180.02562 * 11 9 8 14 14 H 1.07998 * 120.00373 * 24.39199 * 13 11 9 15 15 C 1.38956 * 120.00102 * 204.39009 * 13 11 9 16 16 N 1.31413 * 119.99724 * 12.64001 * 15 13 11 17 17 Si 1.86797 * 120.00322 * 192.63427 * 15 13 11 18 18 H 1.48500 * 109.46912 * 90.00292 * 17 15 13 19 19 H 1.48503 * 109.47464 * 210.00290 * 17 15 13 20 20 H 1.48496 * 109.47117 * 330.00693 * 17 15 13 21 21 C 1.38681 * 120.00274 * 0.52991 * 6 5 4 22 22 C 1.38146 * 119.99762 * 359.72673 * 21 6 5 23 23 C 1.50702 * 120.00061 * 179.97438 * 22 21 6 24 24 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46918 * 299.99410 * 1 2 3 26 26 H 1.08997 * 109.47179 * 59.99547 * 1 2 3 27 27 H 1.08004 * 120.00226 * 359.96590 * 4 3 2 28 28 H 1.07999 * 120.00347 * 179.72014 * 5 4 3 29 29 H 1.08993 * 109.47124 * 299.99471 * 8 7 6 30 30 H 1.08998 * 109.47386 * 60.00306 * 8 7 6 31 31 H 1.09006 * 109.46532 * 85.86662 * 12 11 9 32 32 H 1.08998 * 109.46937 * 205.86122 * 12 11 9 33 33 H 1.08999 * 109.47607 * 325.86378 * 12 11 9 34 34 H 0.96996 * 120.00260 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.00129 * 179.74909 * 21 6 5 36 36 H 1.08997 * 109.47077 * 270.01688 * 23 22 21 37 37 H 1.09000 * 109.47076 * 30.02312 * 23 22 21 38 38 H 1.08999 * 109.46930 * 150.01781 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9178 3.6056 -0.0047 6 6 3.3031 3.6781 0.0002 7 8 3.9205 4.8898 0.0003 8 6 3.0805 6.0458 0.0012 9 6 3.9347 7.2873 0.0018 10 8 5.1439 7.1916 0.0010 11 7 3.3552 8.5042 0.0032 12 6 1.8947 8.6198 0.0037 13 6 4.1322 9.6336 0.0032 14 1 5.1397 9.5960 -0.3841 15 6 3.6236 10.8268 0.5015 16 7 2.5066 10.8268 1.1937 17 14 4.5278 12.4310 0.1876 18 1 4.0361 13.0372 -1.0757 19 1 4.2817 13.3667 1.3142 20 1 5.9842 12.1644 0.0746 21 6 4.0584 2.5151 -0.0007 22 6 3.4313 1.2842 -0.0008 23 6 4.2520 0.0203 -0.0024 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 0.2123 2.3184 0.0004 28 1 1.3296 4.5113 -0.0089 29 1 2.4508 6.0381 -0.8884 30 1 2.4518 6.0374 0.8916 31 1 1.5269 8.5735 1.0288 32 1 1.6054 9.5708 -0.4435 33 1 1.4651 7.8012 -0.5738 34 1 2.1517 11.6596 1.5419 35 1 5.1369 2.5716 -0.0010 36 1 4.4491 -0.2837 -1.0304 37 1 5.1966 0.1998 0.5109 38 1 3.7038 -0.7695 0.5112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494840561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:07 Heat of formation + Delta-G solvation = -94.018864 kcal Electronic energy + Delta-G solvation = -21186.664159 eV Core-core repulsion = 17801.824280 eV Total energy + Delta-G solvation = -3384.839879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56096 -40.60169 -39.55437 -37.45144 -36.64974 -33.77328 -33.60563 -31.16151 -29.43266 -28.38227 -27.85420 -27.49545 -26.08193 -23.18887 -22.54487 -20.88789 -19.20005 -18.90933 -18.63310 -17.83545 -17.41120 -17.20937 -16.60546 -16.45232 -15.99908 -15.60399 -15.50149 -15.13069 -14.65749 -14.35709 -14.18941 -13.93337 -13.75596 -13.40361 -13.20700 -13.17218 -13.02164 -12.85471 -12.65433 -12.54773 -12.47235 -12.30000 -12.14566 -11.67097 -11.33444 -11.04196 -10.43964 -9.86075 -9.74945 -8.68715 -8.39505 -6.05573 0.22961 0.45411 1.35927 1.40733 1.52478 1.86340 1.92363 2.33722 2.44587 2.68779 3.02552 3.15750 3.70854 3.78428 3.89629 3.99224 4.15880 4.18792 4.28165 4.38845 4.46127 4.51589 4.58931 4.60962 4.79594 4.84519 4.88052 4.97860 5.03943 5.23988 5.32238 5.35733 5.37496 5.41120 5.63998 6.01199 6.29281 6.43768 6.55607 7.09944 7.34471 7.91167 8.63707 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.040152 B = 0.003253 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.180871 B = 8605.801399 C = 9218.081894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.080 3.920 4 C -0.160 4.160 5 C -0.180 4.180 6 C 0.076 3.924 7 O -0.320 6.320 8 C 0.069 3.931 9 C 0.432 3.568 10 O -0.624 6.624 11 N -0.453 5.453 12 C 0.113 3.887 13 C -0.349 4.349 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.892 5.892 17 Si 0.992 3.008 18 H -0.262 1.262 19 H -0.271 1.271 20 H -0.278 1.278 21 C -0.131 4.131 22 C -0.086 4.086 23 C -0.101 4.101 24 H 0.120 0.880 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.276 0.724 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 -18.284 -2.393 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.035 3.965 4 C -0.178 4.178 5 C -0.199 4.199 6 C 0.031 3.969 7 O -0.234 6.234 8 C -0.009 4.009 9 C 0.221 3.779 10 O -0.511 6.511 11 N -0.173 5.173 12 C -0.030 4.030 13 C -0.476 4.476 14 H 0.088 0.912 15 C -0.200 4.200 16 N -0.530 5.530 17 Si 0.815 3.185 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.203 1.203 21 C -0.150 4.150 22 C -0.087 4.087 23 C -0.157 4.157 24 H 0.138 0.862 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.177 0.823 28 H 0.165 0.835 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.202 -18.321 -2.292 20.630 hybrid contribution 0.092 1.365 0.069 1.370 sum -9.109 -16.956 -2.223 19.376 Atomic orbital electron populations 1.23330 0.76777 1.05522 1.02098 1.86036 1.23018 1.25856 1.89182 1.18805 0.91765 0.85009 1.00941 1.21281 1.01291 0.90702 1.04531 1.21296 0.92511 0.99911 1.06158 1.19317 0.92324 0.84989 1.00233 1.86150 1.35899 1.12223 1.89149 1.22363 0.92069 0.82230 1.04285 1.20546 0.88553 0.85248 0.83544 1.90509 1.16864 1.87050 1.56631 1.43741 1.07276 1.03735 1.62578 1.21595 0.78674 1.01553 1.01150 1.19620 0.99162 0.87289 1.41564 0.91197 1.26108 0.97603 1.02343 0.93985 1.70037 1.21473 1.29118 1.32333 0.84957 0.78147 0.76805 0.78575 1.18688 1.19617 1.20297 1.20296 1.00470 0.88976 1.05218 1.19270 0.91401 0.95494 1.02505 1.20650 0.98894 0.93008 1.03183 0.86230 0.91967 0.91888 0.82307 0.83500 0.87592 0.88191 0.93189 0.91766 0.91007 0.91392 0.84723 0.90278 0.90694 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.48 9.54 -93.32 -0.89 -7.37 16 3 C 0.08 1.88 6.66 22.49 0.15 2.02 16 4 C -0.16 -3.51 9.03 22.36 0.20 -3.31 16 5 C -0.18 -4.74 9.03 22.36 0.20 -4.54 16 6 C 0.08 2.50 6.69 22.49 0.15 2.66 16 7 O -0.32 -13.09 9.67 -74.40 -0.72 -13.81 16 8 C 0.07 2.61 3.83 71.24 0.27 2.88 16 9 C 0.43 22.30 7.70 87.66 0.68 22.98 16 10 O -0.62 -38.37 16.21 15.96 0.26 -38.11 16 11 N -0.45 -23.64 3.01 -658.87 -1.98 -25.62 16 12 C 0.11 4.75 8.44 127.77 1.08 5.83 16 13 C -0.35 -20.07 9.24 84.04 0.78 -19.29 16 14 H 0.07 4.34 7.45 -2.91 -0.02 4.32 16 15 C 0.00 0.11 5.04 84.93 0.43 0.54 16 16 N -0.89 -46.42 10.84 21.67 0.23 -46.18 16 17 Si 0.99 42.23 29.57 68.60 2.03 44.26 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 21 C -0.13 -3.91 9.64 22.35 0.22 -3.69 16 22 C -0.09 -2.17 5.89 -19.78 -0.12 -2.29 16 23 C -0.10 -1.94 9.79 71.24 0.70 -1.25 16 24 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.61 7.66 -2.39 -0.02 0.60 16 26 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 27 H 0.16 2.43 6.29 -2.91 -0.02 2.41 16 28 H 0.15 3.30 6.29 -2.91 -0.02 3.28 16 29 H 0.11 3.29 6.91 -2.39 -0.02 3.28 16 30 H 0.10 3.31 7.64 -2.39 -0.02 3.29 16 31 H 0.05 2.13 7.83 -2.38 -0.02 2.11 16 32 H 0.06 2.87 6.80 -2.39 -0.02 2.86 16 33 H 0.07 2.30 6.61 -2.39 -0.02 2.28 16 34 H 0.28 13.38 8.31 -92.71 -0.77 12.61 16 35 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 38 H 0.08 1.38 7.53 -2.39 -0.02 1.36 16 Total: -1.00 -74.07 320.36 5.84 -68.22 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.07 Total: 14.75 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.84 Total: 3.86 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -1.75 Total: -71.81 kcal Atomic # 8 Polarization: -57.93 SS G_CDS: -1.35 Total: -59.28 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -74.07 5.84 -68.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494840561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.797 kcal (2) G-P(sol) polarization free energy of solvation -74.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds