Wall clock time and date at job start Fri Apr 10 2020 17:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35134 * 125.61355 * 2 1 4 4 C 1.40369 * 107.11380 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.64725 * 179.97438 * 4 3 2 6 6 C 1.36546 * 106.70731 * 0.02562 * 4 3 2 7 7 C 1.46659 * 125.98509 * 179.97438 * 6 4 3 8 8 O 1.21694 * 120.00044 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99578 * 179.97438 * 7 6 4 10 10 C 1.47021 * 125.65165 * 359.97438 * 9 7 6 11 11 C 1.54320 * 107.27383 * 178.97713 * 10 9 7 12 12 C 1.55163 * 102.94147 * 337.80980 * 11 10 9 13 13 O 1.42905 * 111.00244 * 277.42891 * 12 11 10 14 14 C 1.50698 * 111.00660 * 153.61367 * 12 11 10 15 15 H 1.08002 * 119.99847 * 3.18328 * 14 12 11 16 16 C 1.37871 * 120.00404 * 183.17791 * 14 12 11 17 17 N 1.31519 * 119.99458 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00501 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46647 * 60.00278 * 18 16 14 20 20 H 1.48493 * 109.47247 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47098 * 300.00467 * 18 16 14 22 22 C 1.47524 * 125.63317 * 180.02562 * 9 7 6 23 23 O 1.33926 * 125.62050 * 180.33099 * 2 1 3 24 24 H 1.08999 * 109.47432 * 89.99692 * 1 2 3 25 25 H 1.08993 * 109.46878 * 209.99583 * 1 2 3 26 26 H 1.09002 * 109.46868 * 329.99341 * 1 2 3 27 27 H 1.07996 * 126.44506 * 0.04138 * 3 2 1 28 28 H 1.08995 * 109.47444 * 270.03011 * 5 4 3 29 29 H 1.09005 * 109.46873 * 30.02856 * 5 4 3 30 30 H 1.08998 * 109.47034 * 150.02219 * 5 4 3 31 31 H 1.09008 * 109.87829 * 59.55894 * 10 9 7 32 32 H 1.09003 * 110.01182 * 298.46925 * 10 9 7 33 33 H 1.09002 * 110.72325 * 219.44906 * 11 10 9 34 34 H 1.08996 * 110.71901 * 96.16983 * 11 10 9 35 35 H 0.96696 * 114.00036 * 176.81949 * 13 12 11 36 36 H 0.97010 * 119.99713 * 180.02562 * 17 16 14 37 37 H 1.09004 * 110.36953 * 85.27503 * 22 9 7 38 38 H 1.09001 * 110.41107 * 322.91781 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 4.8617 1.5144 -0.0014 6 6 3.5823 -0.7116 -0.0015 7 6 4.7415 -1.6100 -0.0029 8 8 5.8680 -1.1498 -0.0029 9 7 4.5590 -2.9454 -0.0032 10 6 3.2593 -3.6327 -0.0017 11 6 3.5429 -5.1493 -0.0290 12 6 4.9775 -5.2241 -0.6154 13 8 4.9522 -5.1488 -2.0423 14 6 5.6847 -6.4730 -0.1558 15 1 5.1631 -7.1950 0.4550 16 6 6.9973 -6.6939 -0.5150 17 7 7.6324 -5.8144 -1.2584 18 14 7.8740 -8.2416 0.0554 19 1 7.1556 -9.4353 -0.4587 20 1 9.2663 -8.2407 -0.4611 21 1 7.8971 -8.2789 1.5396 22 6 5.6306 -3.9593 -0.0040 23 8 2.2870 -1.0887 -0.0063 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.9612 2.1260 0.0006 28 1 5.1591 1.7224 -1.0291 29 1 4.6516 2.4523 0.5129 30 1 5.6688 0.9917 0.5118 31 1 2.6876 -3.3464 -0.8846 32 1 2.7026 -3.3758 0.8995 33 1 2.8337 -5.6627 -0.6783 34 1 3.5160 -5.5649 0.9783 35 1 5.8283 -5.1426 -2.4514 36 1 8.5559 -5.9700 -1.5115 37 1 5.9646 -4.1592 1.0141 38 1 6.4666 -3.6284 -0.6203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:24 Heat of formation + Delta-G solvation = -95.907109 kcal Electronic energy + Delta-G solvation = -22336.874397 eV Core-core repulsion = 18951.952638 eV Total energy + Delta-G solvation = -3384.921759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.73999 -40.88439 -38.99393 -36.23689 -35.05209 -34.22181 -33.36508 -31.94840 -29.81888 -28.91335 -28.44098 -26.62702 -24.37471 -22.39702 -21.92338 -21.45817 -20.29245 -19.19345 -18.57130 -17.66060 -17.20679 -16.85272 -16.48254 -16.34424 -15.83926 -15.05472 -14.83768 -14.74494 -14.47940 -14.15537 -14.08520 -13.77109 -13.67525 -13.60757 -13.50671 -13.29993 -13.22583 -12.82199 -12.56484 -12.54536 -12.34652 -12.28998 -12.15234 -11.30586 -11.18933 -10.67578 -10.64222 -10.37090 -9.74594 -9.31757 -8.26829 -6.44581 0.00104 1.33596 1.43979 1.44286 1.52958 1.59714 2.06593 2.11758 2.38630 2.99018 3.48437 3.72213 3.77039 3.80103 4.05033 4.15848 4.28021 4.46211 4.49417 4.54104 4.62318 4.67920 4.72967 4.75145 4.75986 4.95332 4.98114 5.01807 5.15530 5.20823 5.26103 5.33384 5.40551 5.54661 5.72828 5.94741 6.02563 6.47283 6.64009 6.94981 7.26014 7.33454 8.78957 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.004695 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.244162 B = 5961.726953 C = 6587.195781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.023 3.977 3 C -0.228 4.228 4 C -0.090 4.090 5 C -0.092 4.092 6 C -0.116 4.116 7 C 0.596 3.404 8 O -0.568 6.568 9 N -0.607 5.607 10 C 0.116 3.884 11 C -0.111 4.111 12 C 0.234 3.766 13 O -0.590 6.590 14 C -0.558 4.558 15 H 0.072 0.928 16 C 0.027 3.973 17 N -0.918 5.918 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.269 1.269 22 C 0.108 3.892 23 O -0.168 6.168 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.189 0.811 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.376 0.624 36 H 0.271 0.729 37 H 0.051 0.949 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.549 11.624 3.476 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.029 4.029 3 C -0.247 4.247 4 C -0.093 4.093 5 C -0.148 4.148 6 C -0.167 4.167 7 C 0.387 3.613 8 O -0.451 6.451 9 N -0.338 5.338 10 C -0.006 4.006 11 C -0.149 4.149 12 C 0.194 3.806 13 O -0.398 6.398 14 C -0.596 4.596 15 H 0.090 0.910 16 C -0.174 4.174 17 N -0.557 5.557 18 Si 0.793 3.207 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.015 4.015 23 O -0.065 6.065 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.138 0.862 27 H 0.206 0.794 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.529 11.642 3.498 18.943 hybrid contribution 1.839 -0.755 -0.045 1.989 sum -12.690 10.887 3.453 17.073 Atomic orbital electron populations 1.20670 0.80999 1.06096 1.05362 1.23832 0.96157 0.83549 0.99407 1.21790 0.90108 1.01394 1.11358 1.20990 0.98189 0.91502 0.98649 1.20417 0.92879 0.98536 1.03004 1.21475 0.82007 0.94183 1.19009 1.16688 0.86731 0.80648 0.77249 1.90765 1.23939 1.75929 1.54506 1.48735 1.10406 1.04613 1.70042 1.22074 0.83871 0.92748 1.01934 1.22657 0.96601 0.93680 1.01922 1.19850 0.91959 0.90220 0.78599 1.86082 1.34977 1.96941 1.21800 1.21774 0.97633 1.06252 1.33990 0.90982 1.25856 0.97885 0.99612 0.94076 1.69774 1.12455 1.36469 1.36995 0.85457 0.77146 0.79351 0.78791 1.19341 1.21086 1.19415 1.22966 0.90059 0.88710 0.99736 1.84088 1.15327 1.35784 1.71259 0.88079 0.89476 0.86234 0.79383 0.90688 0.88399 0.92280 0.91513 0.89865 0.89405 0.88872 0.77463 0.91987 0.93118 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.41 71.23 0.74 -0.07 16 2 C 0.02 0.51 7.31 24.97 0.18 0.69 16 3 C -0.23 -5.06 10.73 22.07 0.24 -4.82 16 4 C -0.09 -2.75 6.20 -19.74 -0.12 -2.87 16 5 C -0.09 -2.56 9.82 71.24 0.70 -1.86 16 6 C -0.12 -4.23 6.95 24.07 0.17 -4.06 16 7 C 0.60 26.80 7.82 86.44 0.68 27.48 16 8 O -0.57 -28.61 14.99 -4.33 -0.06 -28.67 16 9 N -0.61 -27.37 3.33 -816.22 -2.72 -30.09 16 10 C 0.12 4.34 5.55 86.73 0.48 4.82 16 11 C -0.11 -4.42 6.13 31.78 0.19 -4.23 16 12 C 0.23 11.68 0.88 -10.14 -0.01 11.67 16 13 O -0.59 -31.43 13.17 -148.98 -1.96 -33.39 16 14 C -0.56 -29.35 8.26 25.60 0.21 -29.14 16 15 H 0.07 3.62 7.78 -2.91 -0.02 3.60 16 16 C 0.03 1.40 5.29 84.65 0.45 1.85 16 17 N -0.92 -50.60 10.69 21.45 0.23 -50.37 16 18 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 C 0.11 5.51 5.51 86.84 0.48 5.98 16 23 O -0.17 -5.17 8.28 -4.97 -0.04 -5.21 16 24 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.06 2.00 6.44 -2.39 -0.02 1.98 16 31 H 0.07 2.44 7.67 -2.38 -0.02 2.42 16 32 H 0.08 2.68 7.80 -2.39 -0.02 2.66 16 33 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.09 3.40 8.03 -2.39 -0.02 3.39 16 35 H 0.38 20.92 7.25 -74.06 -0.54 20.39 16 36 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 37 H 0.05 2.65 8.03 -2.38 -0.02 2.63 16 38 H 0.05 2.87 7.48 -2.39 -0.02 2.85 16 Total: -1.00 -67.94 317.85 2.40 -65.54 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.54 Total: 32.88 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 4.39 Total: 5.44 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -2.49 Total: -80.46 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -2.07 Total: -67.28 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -67.94 2.40 -65.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.368 kcal (2) G-P(sol) polarization free energy of solvation -67.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds