Wall clock time and date at job start Fri Apr 10 2020 17:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40359 * 126.44027 * 2 1 4 4 C 1.36550 * 106.70694 * 179.97438 * 3 2 1 5 5 C 1.46653 * 125.98612 * 180.02562 * 4 3 2 6 6 O 1.21696 * 120.00426 * 359.97438 * 5 4 3 7 7 N 1.34782 * 119.99802 * 180.02562 * 5 4 3 8 8 C 1.47423 * 125.64873 * 359.69222 * 7 5 4 9 9 C 1.55124 * 104.72224 * 155.81955 * 8 7 5 10 10 C 1.55154 * 101.48848 * 37.29096 * 9 8 7 11 11 O 1.42902 * 110.71637 * 82.69821 * 10 9 8 12 12 C 1.50700 * 110.87080 * 205.89531 * 10 9 8 13 13 H 1.07998 * 120.00131 * 355.07256 * 12 10 9 14 14 C 1.37881 * 119.99546 * 175.06217 * 12 10 9 15 15 N 1.31511 * 120.00393 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99486 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47048 * 60.00730 * 16 14 12 18 18 H 1.48501 * 109.46692 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47280 * 300.00229 * 16 14 12 20 20 C 1.47024 * 125.64534 * 179.97438 * 7 5 4 21 21 O 1.34910 * 108.02376 * 0.02562 * 4 3 2 22 22 C 1.33934 * 109.38240 * 359.74894 * 21 4 3 23 23 C 1.50701 * 125.61552 * 180.26911 * 22 21 4 24 24 H 1.09001 * 109.46953 * 90.02452 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.02050 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.02680 * 1 2 3 27 27 H 1.08001 * 126.65226 * 359.97438 * 3 2 1 28 28 H 1.09002 * 110.36326 * 274.74943 * 8 7 5 29 29 H 1.09000 * 110.36372 * 37.06626 * 8 7 5 30 30 H 1.09005 * 111.19206 * 279.18750 * 9 8 7 31 31 H 1.09002 * 110.94046 * 155.28941 * 9 8 7 32 32 H 0.96704 * 113.99951 * 185.02184 * 11 10 9 33 33 H 0.96995 * 120.00017 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.88511 * 300.43958 * 20 7 5 35 35 H 1.08998 * 109.88461 * 61.45151 * 20 7 5 36 36 H 1.08999 * 109.47335 * 270.16202 * 23 22 21 37 37 H 1.09002 * 109.47229 * 30.15973 * 23 22 21 38 38 H 1.09002 * 109.47100 * 150.15614 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6681 0.0006 5 6 4.8379 1.4941 0.0013 6 8 4.7471 2.7077 0.0010 7 7 6.0521 0.9092 0.0013 8 6 6.3063 -0.5430 0.0071 9 6 7.7212 -0.6980 -0.6097 10 6 8.4507 0.5400 -0.0246 11 8 8.9248 0.2699 1.2962 12 6 9.5857 0.9670 -0.9193 13 1 9.8409 0.3765 -1.7868 14 6 10.2980 2.1117 -0.6305 15 7 9.9874 2.8305 0.4260 16 14 11.7044 2.6413 -1.7401 17 1 11.1901 2.8758 -3.1133 18 1 12.3041 3.8943 -1.2150 19 1 12.7371 1.5748 -1.7735 20 6 7.3426 1.6137 0.0015 21 8 3.5858 -0.6804 0.0004 22 6 2.3097 -1.0870 0.0052 23 6 1.8455 -2.5207 0.0123 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3634 -0.8898 0.5141 26 1 -0.3633 0.8902 0.5134 27 1 2.0267 2.1625 -0.0004 28 1 6.2905 -0.9268 1.0272 29 1 5.5672 -1.0598 -0.6051 30 1 7.6838 -0.6512 -1.6981 31 1 8.1922 -1.6228 -0.2766 32 1 9.3204 1.0348 1.7362 33 1 10.4888 3.6356 0.6293 34 1 7.4192 2.2473 -0.8821 35 1 7.4332 2.2212 0.9020 36 1 1.7338 -2.8716 -1.0136 37 1 2.5802 -3.1380 0.5294 38 1 0.8868 -2.5896 0.5264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:29 Heat of formation + Delta-G solvation = -75.514665 kcal Electronic energy + Delta-G solvation = -22122.413449 eV Core-core repulsion = 18738.375973 eV Total energy + Delta-G solvation = -3384.037476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.64072 -39.23149 -37.23656 -34.66211 -34.11716 -32.24243 -31.98287 -30.15279 -28.77125 -28.01227 -26.53938 -24.80991 -22.98363 -21.51640 -20.58124 -19.66440 -18.90049 -17.17542 -16.92648 -16.46038 -15.63432 -15.48662 -14.86685 -14.72327 -14.29202 -13.85195 -13.39245 -13.21448 -13.18303 -13.02382 -12.89294 -12.81947 -12.71253 -12.32211 -12.13047 -11.72519 -11.55693 -11.45283 -11.03985 -10.80330 -10.66051 -10.51875 -10.19139 -9.77279 -9.63649 -9.33557 -8.68972 -8.39376 -8.34570 -7.90535 -6.29425 -4.38350 1.24781 2.33693 2.76093 3.22599 3.28232 3.30055 3.57047 3.59055 4.26630 4.59329 4.77004 4.81841 4.98516 5.06858 5.22431 5.33895 5.41881 5.45461 5.52420 5.64151 5.74911 5.77331 5.81016 5.93459 5.98777 6.06599 6.26157 6.48591 6.49145 6.72449 6.83054 6.86327 7.05579 7.22749 7.35229 7.71575 7.98761 8.08347 8.53947 8.65557 9.27708 9.36685 10.78477 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.034033 B = 0.004287 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.541223 B = 6529.129112 C = 6938.595578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.194 4.194 3 C -0.129 4.129 4 C -0.056 4.056 5 C 0.600 3.400 6 O -0.532 6.532 7 N -0.599 5.599 8 C 0.101 3.899 9 C -0.117 4.117 10 C 0.248 3.752 11 O -0.584 6.584 12 C -0.539 4.539 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.894 5.894 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.103 3.897 21 O -0.154 6.154 22 C 0.001 3.999 23 C -0.074 4.074 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.157 0.843 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.382 0.618 33 H 0.271 0.729 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.181 -8.901 -0.548 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.195 4.195 3 C -0.150 4.150 4 C -0.108 4.108 5 C 0.388 3.612 6 O -0.412 6.412 7 N -0.330 5.330 8 C -0.021 4.021 9 C -0.155 4.155 10 C 0.208 3.792 11 O -0.393 6.393 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.132 4.132 15 N -0.533 5.533 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.018 4.018 21 O -0.050 6.050 22 C -0.051 4.051 23 C -0.131 4.131 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.175 0.825 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.233 0.767 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.163 -8.835 -0.580 17.559 hybrid contribution 0.854 1.142 -0.403 1.482 sum -14.309 -7.693 -0.982 16.276 Atomic orbital electron populations 1.20160 0.88912 1.02495 1.02006 1.20145 0.97236 0.91885 1.10244 1.21741 0.90540 1.00275 1.02401 1.22258 0.96353 0.80038 1.12136 1.16260 0.80447 0.86012 0.78504 1.90850 1.85512 1.12096 1.52777 1.48743 1.06124 1.08863 1.69301 1.22488 0.98068 0.80697 1.00890 1.22798 0.92783 1.00012 0.99885 1.19503 0.89666 0.88062 0.81966 1.86116 1.81149 1.41633 1.30375 1.21459 1.15716 1.09315 1.11234 0.91506 1.25075 0.97257 0.95638 0.95260 1.69681 1.40838 1.16496 1.26276 0.86445 0.81790 0.77939 0.80655 1.20004 1.21054 1.19970 1.23119 0.79471 0.96785 1.02387 1.84173 1.28113 1.22058 1.70650 1.22562 0.81249 0.97045 1.04282 1.20348 1.01764 0.87337 1.03631 0.91499 0.91701 0.91475 0.82538 0.91509 0.91138 0.90385 0.90372 0.76743 0.91888 0.91106 0.91229 0.89864 0.90246 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.17 36.01 0.37 -0.32 16 2 C -0.19 -2.44 6.14 -104.93 -0.64 -3.09 16 3 C -0.13 -2.00 10.57 -39.39 -0.42 -2.41 16 4 C -0.06 -1.00 6.93 -36.80 -0.25 -1.25 16 5 C 0.60 12.91 7.82 -12.86 -0.10 12.81 16 6 O -0.53 -12.89 17.19 5.19 0.09 -12.80 16 7 N -0.60 -13.03 3.33 -171.93 -0.57 -13.60 16 8 C 0.10 1.91 6.18 -2.41 -0.01 1.90 16 9 C -0.12 -2.37 6.24 -24.47 -0.15 -2.52 16 10 C 0.25 6.04 0.85 -89.94 -0.08 5.97 16 11 O -0.58 -14.68 13.07 -35.23 -0.46 -15.15 16 12 C -0.54 -14.10 8.13 -34.44 -0.28 -14.38 16 13 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 14 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 15 N -0.89 -23.82 10.96 55.43 0.61 -23.21 16 16 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.10 2.54 5.23 -3.06 -0.02 2.52 16 21 O -0.15 -2.43 7.85 5.00 0.04 -2.39 16 22 C 0.00 0.01 7.31 -35.42 -0.26 -0.25 16 23 C -0.07 -0.58 10.21 36.01 0.37 -0.21 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.44 7.12 -51.93 -0.37 0.07 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.18 6.20 -51.93 -0.32 0.86 16 30 H 0.08 1.52 8.05 -51.93 -0.42 1.10 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.38 9.80 7.45 45.56 0.34 10.14 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 34 H 0.07 1.88 7.82 -51.93 -0.41 1.47 16 35 H 0.07 1.85 7.92 -51.93 -0.41 1.44 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.51 7.12 -51.93 -0.37 0.14 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -30.03 319.00 -6.55 -36.58 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.46 Total: 9.82 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.58 Total: 0.52 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.04 Total: -36.82 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.33 Total: -30.34 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.03 -6.55 -36.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.936 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds