Wall clock time and date at job start Fri Apr 10 2020 17:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40359 * 126.44027 * 2 1 4 4 C 1.36550 * 106.70694 * 179.97438 * 3 2 1 5 5 C 1.46653 * 125.98612 * 180.02562 * 4 3 2 6 6 O 1.21696 * 120.00426 * 359.97438 * 5 4 3 7 7 N 1.34782 * 119.99802 * 180.02562 * 5 4 3 8 8 C 1.47423 * 125.64873 * 359.69222 * 7 5 4 9 9 C 1.55124 * 104.72224 * 155.81955 * 8 7 5 10 10 C 1.55154 * 101.48848 * 37.29096 * 9 8 7 11 11 O 1.42902 * 110.71637 * 82.69821 * 10 9 8 12 12 C 1.50700 * 110.87080 * 205.89531 * 10 9 8 13 13 H 1.07998 * 120.00131 * 355.07256 * 12 10 9 14 14 C 1.37881 * 119.99546 * 175.06217 * 12 10 9 15 15 N 1.31511 * 120.00393 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99486 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47048 * 60.00730 * 16 14 12 18 18 H 1.48501 * 109.46692 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47280 * 300.00229 * 16 14 12 20 20 C 1.47024 * 125.64534 * 179.97438 * 7 5 4 21 21 O 1.34910 * 108.02376 * 0.02562 * 4 3 2 22 22 C 1.33934 * 109.38240 * 359.74894 * 21 4 3 23 23 C 1.50701 * 125.61552 * 180.26911 * 22 21 4 24 24 H 1.09001 * 109.46953 * 90.02452 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.02050 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.02680 * 1 2 3 27 27 H 1.08001 * 126.65226 * 359.97438 * 3 2 1 28 28 H 1.09002 * 110.36326 * 274.74943 * 8 7 5 29 29 H 1.09000 * 110.36372 * 37.06626 * 8 7 5 30 30 H 1.09005 * 111.19206 * 279.18750 * 9 8 7 31 31 H 1.09002 * 110.94046 * 155.28941 * 9 8 7 32 32 H 0.96704 * 113.99951 * 185.02184 * 11 10 9 33 33 H 0.96995 * 120.00017 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.88511 * 300.43958 * 20 7 5 35 35 H 1.08998 * 109.88461 * 61.45151 * 20 7 5 36 36 H 1.08999 * 109.47335 * 270.16202 * 23 22 21 37 37 H 1.09002 * 109.47229 * 30.15973 * 23 22 21 38 38 H 1.09002 * 109.47100 * 150.15614 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6681 0.0006 5 6 4.8379 1.4941 0.0013 6 8 4.7471 2.7077 0.0010 7 7 6.0521 0.9092 0.0013 8 6 6.3063 -0.5430 0.0071 9 6 7.7212 -0.6980 -0.6097 10 6 8.4507 0.5400 -0.0246 11 8 8.9248 0.2699 1.2962 12 6 9.5857 0.9670 -0.9193 13 1 9.8409 0.3765 -1.7868 14 6 10.2980 2.1117 -0.6305 15 7 9.9874 2.8305 0.4260 16 14 11.7044 2.6413 -1.7401 17 1 11.1901 2.8758 -3.1133 18 1 12.3041 3.8943 -1.2150 19 1 12.7371 1.5748 -1.7735 20 6 7.3426 1.6137 0.0015 21 8 3.5858 -0.6804 0.0004 22 6 2.3097 -1.0870 0.0052 23 6 1.8455 -2.5207 0.0123 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3634 -0.8898 0.5141 26 1 -0.3633 0.8902 0.5134 27 1 2.0267 2.1625 -0.0004 28 1 6.2905 -0.9268 1.0272 29 1 5.5672 -1.0598 -0.6051 30 1 7.6838 -0.6512 -1.6981 31 1 8.1922 -1.6228 -0.2766 32 1 9.3204 1.0348 1.7362 33 1 10.4888 3.6356 0.6293 34 1 7.4192 2.2473 -0.8821 35 1 7.4332 2.2212 0.9020 36 1 1.7338 -2.8716 -1.0136 37 1 2.5802 -3.1380 0.5294 38 1 0.8868 -2.5896 0.5264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:29 Heat of formation + Delta-G solvation = -96.331644 kcal Electronic energy + Delta-G solvation = -22123.316141 eV Core-core repulsion = 18738.375973 eV Total energy + Delta-G solvation = -3384.940168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.78407 -40.95387 -39.04279 -36.26720 -35.35753 -34.26450 -33.03986 -31.85907 -29.87076 -29.51611 -27.98448 -26.37947 -24.56091 -22.78024 -21.84764 -21.51725 -20.27145 -19.12702 -18.41053 -17.70565 -17.36167 -17.02591 -16.47837 -16.36325 -15.96074 -14.91991 -14.89732 -14.80788 -14.56278 -14.28181 -14.01981 -13.88076 -13.65329 -13.58598 -13.50473 -13.35305 -12.93293 -12.84733 -12.58144 -12.43215 -12.39198 -12.33017 -12.12598 -11.48647 -11.21642 -10.76053 -10.67903 -10.34631 -9.83392 -9.32405 -8.28715 -6.45277 -0.03625 1.27231 1.42043 1.42821 1.51007 1.52794 2.02217 2.06441 2.37240 2.97623 3.40781 3.72469 3.78398 3.83764 4.00959 4.13536 4.23902 4.33244 4.46625 4.53497 4.61901 4.70972 4.74406 4.78309 4.91483 4.93770 5.03697 5.07542 5.08855 5.12885 5.17251 5.28336 5.43153 5.60104 5.70018 5.90998 6.01967 6.40941 6.62138 6.87061 7.23519 7.31796 8.77597 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.034033 B = 0.004287 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.541223 B = 6529.129112 C = 6938.595578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.202 4.202 3 C -0.119 4.119 4 C -0.099 4.099 5 C 0.597 3.403 6 O -0.576 6.576 7 N -0.607 5.607 8 C 0.110 3.890 9 C -0.110 4.110 10 C 0.235 3.765 11 O -0.586 6.586 12 C -0.560 4.560 13 H 0.069 0.931 14 C 0.027 3.973 15 N -0.916 5.916 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.267 1.267 20 C 0.121 3.879 21 O -0.164 6.164 22 C 0.017 3.983 23 C -0.076 4.076 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.157 0.843 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.376 0.624 33 H 0.271 0.729 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.138 -11.460 -1.235 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.203 4.203 3 C -0.140 4.140 4 C -0.151 4.151 5 C 0.387 3.613 6 O -0.459 6.459 7 N -0.338 5.338 8 C -0.011 4.011 9 C -0.148 4.148 10 C 0.195 3.805 11 O -0.394 6.394 12 C -0.598 4.598 13 H 0.087 0.913 14 C -0.175 4.175 15 N -0.555 5.555 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.002 4.002 21 O -0.061 6.061 22 C -0.035 4.035 23 C -0.131 4.131 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.174 0.826 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.225 0.775 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.134 -11.434 -1.269 20.638 hybrid contribution 1.317 1.874 -0.171 2.297 sum -15.816 -9.560 -1.440 18.537 Atomic orbital electron populations 1.20286 0.85791 1.03999 1.03282 1.20587 0.99233 0.90494 1.10021 1.22040 0.90382 1.01435 1.00094 1.21487 0.95133 0.81115 1.17341 1.16743 0.81285 0.86078 0.77183 1.90797 1.86396 1.14092 1.54657 1.48780 1.05384 1.09872 1.69753 1.22543 0.97902 0.79094 1.01570 1.22797 0.92968 0.98755 1.00234 1.19700 0.89377 0.89959 0.81500 1.86103 1.81132 1.41277 1.30877 1.21793 1.16520 1.09772 1.11743 0.91254 1.25833 0.99482 0.95667 0.96469 1.69795 1.41594 1.16638 1.27466 0.85492 0.79041 0.77588 0.78842 1.19758 1.20919 1.19161 1.22650 0.81709 0.96584 0.99226 1.84113 1.30109 1.20717 1.71140 1.23646 0.79876 0.99317 1.00700 1.20679 1.03107 0.83916 1.05447 0.90235 0.89056 0.91210 0.82554 0.91092 0.88453 0.89609 0.88674 0.77480 0.91979 0.94218 0.94431 0.87799 0.89447 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.17 71.24 0.72 -0.30 16 2 C -0.20 -4.53 6.14 -20.06 -0.12 -4.65 16 3 C -0.12 -3.60 10.57 22.39 0.24 -3.36 16 4 C -0.10 -3.56 6.93 24.07 0.17 -3.39 16 5 C 0.60 26.69 7.82 86.44 0.68 27.37 16 6 O -0.58 -29.59 17.19 -4.33 -0.07 -29.66 16 7 N -0.61 -27.27 3.33 -816.08 -2.71 -29.99 16 8 C 0.11 4.10 6.18 86.93 0.54 4.64 16 9 C -0.11 -4.38 6.24 32.06 0.20 -4.18 16 10 C 0.23 11.68 0.85 -10.35 -0.01 11.67 16 11 O -0.59 -30.14 13.07 -148.98 -1.95 -32.09 16 12 C -0.56 -29.77 8.13 25.60 0.21 -29.57 16 13 H 0.07 3.56 7.78 -2.91 -0.02 3.53 16 14 C 0.03 1.41 5.28 84.66 0.45 1.86 16 15 N -0.92 -50.45 10.96 21.45 0.24 -50.22 16 16 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 C 0.12 6.26 5.23 86.73 0.45 6.72 16 21 O -0.16 -4.89 7.85 -5.03 -0.04 -4.93 16 22 C 0.02 0.37 7.31 24.97 0.18 0.55 16 23 C -0.08 -0.80 10.21 71.24 0.73 -0.08 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.09 0.76 7.12 -2.39 -0.02 0.74 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.16 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.10 3.10 6.20 -2.39 -0.01 3.08 16 30 H 0.09 3.27 8.05 -2.38 -0.02 3.25 16 31 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 32 H 0.38 20.08 7.45 -74.05 -0.55 19.53 16 33 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.04 2.24 7.82 -2.39 -0.02 2.23 16 35 H 0.04 2.13 7.92 -2.39 -0.02 2.12 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.12 0.64 7.12 -2.39 -0.02 0.63 16 Total: -1.00 -68.33 319.00 2.44 -65.89 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.53 Total: 29.37 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 4.43 Total: 7.27 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -2.48 Total: -80.20 kcal Atomic # 8 Polarization: -64.62 SS G_CDS: -2.06 Total: -66.68 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -68.33 2.44 -65.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.447 kcal (2) G-P(sol) polarization free energy of solvation -68.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds