Wall clock time and date at job start Fri Apr 10 2020 17:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34514 * 125.78826 * 2 1 4 4 C 1.41382 * 106.83950 * 179.75186 * 3 2 1 5 5 C 1.34521 * 106.83870 * 0.37480 * 4 3 2 6 6 C 1.50698 * 125.78675 * 179.89173 * 5 4 3 7 7 C 1.50695 * 109.47462 * 89.71517 * 6 5 4 8 8 O 1.21280 * 119.99679 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00178 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.65138 * 359.97438 * 9 7 6 11 11 C 1.54322 * 107.27482 * 178.98361 * 10 9 7 12 12 C 1.55157 * 102.93912 * 337.80443 * 11 10 9 13 13 O 1.42900 * 111.00520 * 277.38901 * 12 11 10 14 14 C 1.50702 * 111.00344 * 153.57728 * 12 11 10 15 15 H 1.08002 * 120.00299 * 241.45696 * 14 12 11 16 16 C 1.37884 * 119.99942 * 61.17254 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.47424 * 125.64952 * 180.02562 * 9 7 6 23 23 O 1.34295 * 108.42060 * 359.62662 * 5 4 3 24 24 H 1.08993 * 109.47017 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47097 * 299.99817 * 1 2 3 26 26 H 1.09010 * 109.46980 * 59.99413 * 1 2 3 27 27 H 1.07999 * 126.57926 * 0.02562 * 3 2 1 28 28 H 1.08002 * 126.58268 * 180.24344 * 4 3 2 29 29 H 1.09005 * 109.47390 * 329.70954 * 6 5 4 30 30 H 1.09003 * 109.47159 * 209.71371 * 6 5 4 31 31 H 1.09003 * 109.88076 * 59.56192 * 10 9 7 32 32 H 1.09003 * 109.88029 * 298.40050 * 10 9 7 33 33 H 1.08995 * 110.71729 * 219.44160 * 11 10 9 34 34 H 1.08996 * 110.71909 * 96.16437 * 11 10 9 35 35 H 0.96704 * 113.99783 * 295.41666 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09007 * 110.36818 * 85.24741 * 22 9 7 38 38 H 1.09006 * 110.37032 * 322.92419 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0059 5 6 3.5813 -0.7122 0.0007 6 6 4.7705 -1.6379 0.0017 7 6 5.1660 -1.9462 1.4228 8 8 4.5437 -1.4615 2.3440 9 7 6.2112 -2.7604 1.6699 10 6 7.0483 -3.4131 0.6526 11 6 8.1296 -4.2222 1.3992 12 6 8.1889 -3.5269 2.7850 13 8 9.0165 -2.3629 2.7391 14 6 8.6642 -4.4825 3.8489 15 1 8.0218 -4.7259 4.6823 16 6 9.9170 -5.0508 3.7553 17 7 10.6992 -4.7544 2.7405 18 14 10.5032 -6.2412 5.0700 19 1 9.5843 -7.4064 5.1280 20 1 11.8740 -6.7073 4.7401 21 1 10.5176 -5.5561 6.3875 22 6 6.7038 -3.1451 3.0051 23 8 2.2924 -1.0894 0.0003 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 1.9665 2.1204 0.0004 28 1 4.5212 1.2433 0.0111 29 1 5.6043 -1.1589 -0.5118 30 1 4.5109 -2.5635 -0.5121 31 1 7.5190 -2.6597 0.0209 32 1 6.4389 -4.0816 0.0444 33 1 9.0894 -4.1463 0.8883 34 1 7.8282 -5.2645 1.5033 35 1 9.9473 -2.5492 2.5543 36 1 11.5808 -5.1539 2.6748 37 1 6.1442 -4.0004 3.3840 38 1 6.6265 -2.3044 3.6947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:31 Heat of formation + Delta-G solvation = -93.798857 kcal Electronic energy + Delta-G solvation = -21673.599014 eV Core-core repulsion = 18288.768675 eV Total energy + Delta-G solvation = -3384.830338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.55378 -41.01799 -38.97365 -36.08825 -34.21277 -34.17028 -33.94424 -31.82457 -30.69467 -29.85427 -27.21107 -25.74287 -23.85920 -22.75965 -21.69120 -21.19598 -20.30127 -19.12558 -18.31568 -17.65167 -17.01951 -16.92629 -16.79501 -16.39613 -15.86167 -15.42712 -15.14656 -14.76562 -14.41655 -13.97891 -13.80251 -13.75330 -13.72280 -13.60025 -13.44398 -13.25790 -13.02418 -12.96976 -12.63185 -12.54951 -12.45716 -12.27787 -11.84004 -11.27523 -11.06701 -10.80135 -10.63975 -10.15311 -9.60245 -9.21360 -8.24048 -6.39068 0.68598 1.43465 1.45560 1.51924 1.55875 1.60564 1.91044 2.20368 2.40915 3.00909 3.50801 3.65933 3.84695 3.97801 4.03170 4.12311 4.22090 4.35260 4.38821 4.43056 4.57485 4.59830 4.71274 4.73408 4.85796 4.87877 4.92091 5.06903 5.18741 5.25103 5.29863 5.46940 5.56728 5.64817 5.77842 6.07803 6.21286 6.57613 6.64767 7.09022 7.31322 7.40423 8.81280 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.046837 B = 0.003454 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.669011 B = 8104.508573 C = 8244.139224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 C -0.226 4.226 4 C -0.206 4.206 5 C -0.017 4.017 6 C -0.044 4.044 7 C 0.518 3.482 8 O -0.592 6.592 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.127 4.127 12 C 0.234 3.766 13 O -0.593 6.593 14 C -0.565 4.565 15 H 0.052 0.948 16 C 0.039 3.961 17 N -0.904 5.904 18 Si 0.958 3.042 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.280 1.280 22 C 0.125 3.875 23 O -0.192 6.192 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.170 0.830 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.378 0.622 36 H 0.272 0.728 37 H 0.070 0.930 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 5.325 -11.077 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 C -0.245 4.245 4 C -0.226 4.226 5 C -0.067 4.067 6 C -0.083 4.083 7 C 0.308 3.692 8 O -0.473 6.473 9 N -0.341 5.341 10 C -0.021 4.021 11 C -0.165 4.165 12 C 0.194 3.806 13 O -0.401 6.401 14 C -0.604 4.604 15 H 0.070 0.930 16 C -0.163 4.163 17 N -0.542 5.542 18 Si 0.784 3.216 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.206 1.206 22 C 0.002 3.998 23 O -0.090 6.090 24 H 0.096 0.904 25 H 0.115 0.885 26 H 0.127 0.873 27 H 0.187 0.813 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.360 5.577 -10.587 17.935 hybrid contribution 1.341 -0.741 1.025 1.843 sum -12.018 4.837 -9.562 16.102 Atomic orbital electron populations 1.20486 0.82285 1.04734 1.05152 1.23273 0.95711 0.83710 1.04890 1.21859 0.92209 1.00586 1.09830 1.21844 0.99386 0.93899 1.07428 1.21806 0.82868 0.94605 1.07449 1.20128 0.93852 1.01314 0.93033 1.20776 0.78768 0.77402 0.92213 1.90672 1.54624 1.53724 1.48306 1.48655 1.30008 1.46428 1.08964 1.22343 0.92492 0.96702 0.90522 1.22950 0.97907 0.98407 0.97262 1.19765 0.85284 0.82738 0.92798 1.86125 1.23805 1.35234 1.94971 1.21639 1.01965 1.27232 1.09521 0.92963 1.25569 0.96196 0.97191 0.97320 1.69763 1.09852 1.44408 1.30216 0.85619 0.77533 0.79161 0.79328 1.19653 1.20306 1.20567 1.22129 0.94748 0.98343 0.84558 1.83908 1.16741 1.36396 1.71931 0.90353 0.88491 0.87324 0.81256 0.82665 0.83128 0.84639 0.89966 0.88754 0.90361 0.91973 0.77223 0.91891 0.91144 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.42 71.24 0.74 -0.30 16 2 C -0.03 -0.65 7.32 24.83 0.18 -0.47 16 3 C -0.23 -5.62 10.81 22.19 0.24 -5.38 16 4 C -0.21 -5.81 10.81 22.19 0.24 -5.57 16 5 C -0.02 -0.52 5.81 24.83 0.14 -0.38 16 6 C -0.04 -1.16 5.43 29.10 0.16 -1.00 16 7 C 0.52 19.35 7.84 87.66 0.69 20.04 16 8 O -0.59 -27.56 16.29 -3.03 -0.05 -27.61 16 9 N -0.61 -23.22 3.33 -811.78 -2.70 -25.92 16 10 C 0.10 3.22 6.49 86.73 0.56 3.78 16 11 C -0.13 -5.15 5.38 31.78 0.17 -4.98 16 12 C 0.23 11.22 0.88 -10.15 -0.01 11.21 16 13 O -0.59 -30.02 13.18 -148.98 -1.96 -31.98 16 14 C -0.57 -29.51 8.27 25.60 0.21 -29.30 16 15 H 0.05 2.77 7.79 -2.91 -0.02 2.74 16 16 C 0.04 1.97 5.27 84.66 0.45 2.41 16 17 N -0.90 -45.20 10.73 21.45 0.23 -44.97 16 18 Si 0.96 40.73 29.54 68.60 2.03 42.76 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 C 0.13 5.70 6.08 86.86 0.53 6.23 16 23 O -0.19 -5.89 10.65 -2.40 -0.03 -5.92 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 29 H 0.15 3.01 8.14 -2.38 -0.02 2.99 16 30 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 3.32 7.54 -2.39 -0.02 3.30 16 34 H 0.06 2.57 8.03 -2.39 -0.02 2.55 16 35 H 0.38 19.07 7.51 -74.05 -0.56 18.51 16 36 H 0.27 12.98 8.31 -92.70 -0.77 12.21 16 37 H 0.07 3.16 8.03 -2.38 -0.02 3.14 16 38 H 0.04 2.15 8.04 -2.38 -0.02 2.13 16 Total: -1.00 -67.21 324.20 2.34 -64.88 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.51 Total: 32.46 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 4.30 Total: -3.70 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -2.47 Total: -70.89 kcal Atomic # 8 Polarization: -63.47 SS G_CDS: -2.04 Total: -65.50 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -67.21 2.34 -64.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.920 kcal (2) G-P(sol) polarization free energy of solvation -67.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds