Wall clock time and date at job start Fri Apr 10 2020 17:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78762 * 2 1 4 4 C 1.41385 * 106.83926 * 179.76997 * 3 2 1 5 5 C 1.34515 * 106.83992 * 0.23220 * 4 3 2 6 6 C 1.50704 * 125.79099 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46881 * 89.99747 * 6 5 4 8 8 O 1.21278 * 120.00342 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00062 * 180.02562 * 7 6 5 10 10 C 1.47026 * 125.64642 * 0.02598 * 9 7 6 11 11 C 1.54329 * 107.27158 * 181.02447 * 10 9 7 12 12 C 1.55156 * 102.94098 * 22.18916 * 11 10 9 13 13 O 1.42903 * 111.00108 * 82.57381 * 12 11 10 14 14 C 1.50702 * 111.00359 * 206.38697 * 12 11 10 15 15 H 1.07994 * 120.00240 * 118.54962 * 14 12 11 16 16 C 1.37877 * 119.99556 * 298.54967 * 14 12 11 17 17 N 1.31518 * 120.00584 * 359.97438 * 16 14 12 18 18 Si 1.86810 * 119.99537 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46769 * 119.99959 * 18 16 14 21 21 H 1.48496 * 109.47078 * 239.99993 * 18 16 14 22 22 C 1.47422 * 125.65360 * 179.71429 * 9 7 6 23 23 O 1.34305 * 125.78789 * 180.16213 * 2 1 3 24 24 H 1.09001 * 109.47378 * 89.99412 * 1 2 3 25 25 H 1.08999 * 109.47456 * 209.99695 * 1 2 3 26 26 H 1.09008 * 109.47140 * 329.99897 * 1 2 3 27 27 H 1.08002 * 126.58498 * 0.04167 * 3 2 1 28 28 H 1.08001 * 126.58081 * 180.18948 * 4 3 2 29 29 H 1.08999 * 109.46975 * 209.99542 * 6 5 4 30 30 H 1.08996 * 109.46842 * 329.99986 * 6 5 4 31 31 H 1.09007 * 109.88020 * 300.43566 * 10 9 7 32 32 H 1.08999 * 109.88455 * 61.44624 * 10 9 7 33 33 H 1.08997 * 110.71733 * 140.55542 * 11 10 9 34 34 H 1.09003 * 110.71541 * 263.82902 * 11 10 9 35 35 H 0.96701 * 113.99838 * 61.45859 * 13 12 11 36 36 H 0.96992 * 119.99728 * 180.02562 * 17 16 14 37 37 H 1.08992 * 110.37152 * 274.74964 * 22 9 7 38 38 H 1.09008 * 110.36484 * 37.07098 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 0.0054 5 6 3.5814 -0.7122 0.0032 6 6 4.7706 -1.6379 0.0067 7 6 5.1611 -1.9485 1.4287 8 8 4.5351 -1.4661 2.3487 9 7 6.2060 -2.7624 1.6781 10 6 7.0479 -3.4116 0.6626 11 6 8.0948 -4.2631 1.4114 12 6 7.4300 -4.4940 2.7943 13 8 6.5042 -5.5812 2.7423 14 6 8.4690 -4.7235 3.8615 15 1 8.5447 -4.0431 4.6967 16 6 9.3231 -5.8022 3.7714 17 7 9.2307 -6.6310 2.7544 18 14 10.6115 -6.0863 5.0939 19 1 10.5085 -5.0201 6.1224 20 1 10.3855 -7.4095 5.7289 21 1 11.9641 -6.0554 4.4819 22 6 6.6981 -3.1441 3.0143 23 8 2.2924 -1.0895 -0.0031 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.9666 2.1205 0.0006 28 1 4.5212 1.2433 0.0098 29 1 4.5127 -2.5626 -0.5095 30 1 5.6060 -1.1580 -0.5029 31 1 6.4354 -4.0516 0.0273 32 1 7.5467 -2.6557 0.0561 33 1 8.2585 -5.2112 0.8992 34 1 9.0309 -3.7154 1.5202 35 1 6.9062 -6.4295 2.5100 36 1 9.8313 -7.3900 2.6914 37 1 7.3901 -2.3919 3.3929 38 1 5.8633 -3.2736 3.7033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:33 Heat of formation + Delta-G solvation = -72.927425 kcal Electronic energy + Delta-G solvation = -21679.797313 eV Core-core repulsion = 18295.872028 eV Total energy + Delta-G solvation = -3383.925285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.50805 -39.45128 -37.27148 -34.31157 -33.11027 -32.91566 -32.25089 -30.44284 -29.36657 -28.23412 -25.62954 -24.44052 -22.33841 -21.69565 -20.28491 -19.75515 -18.84226 -17.26810 -16.84563 -16.48721 -15.82180 -15.43400 -14.99176 -14.90309 -14.18186 -14.08278 -13.89278 -13.35584 -13.15144 -13.00814 -12.73721 -12.60074 -12.37158 -12.15642 -11.96511 -11.78419 -11.48041 -11.37222 -11.33040 -10.92922 -10.65139 -10.47229 -10.06035 -9.78617 -9.51364 -9.39282 -8.71769 -8.25752 -8.18465 -8.03254 -6.31421 -4.39317 1.75383 2.65564 2.90119 3.02828 3.17109 3.26477 3.31040 3.61511 4.24846 4.58147 4.86626 4.91421 5.01709 5.09229 5.11530 5.31466 5.34756 5.40922 5.51108 5.58416 5.68379 5.80795 5.86866 5.97974 6.02246 6.17543 6.28005 6.40616 6.60749 6.62614 6.85421 6.92341 7.25295 7.26110 7.31060 7.70613 7.98642 8.08046 8.57791 8.64363 9.27881 9.36787 10.76014 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.046102 B = 0.003449 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.206499 B = 8115.991422 C = 8142.105217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.018 4.018 3 C -0.211 4.211 4 C -0.198 4.198 5 C 0.014 3.986 6 C -0.058 4.058 7 C 0.523 3.477 8 O -0.544 6.544 9 N -0.606 5.606 10 C 0.096 3.904 11 C -0.136 4.136 12 C 0.247 3.753 13 O -0.582 6.582 14 C -0.534 4.534 15 H 0.065 0.935 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.121 3.879 23 O -0.170 6.170 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.381 0.619 36 H 0.267 0.733 37 H 0.072 0.928 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 9.626 -9.497 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.230 4.230 4 C -0.217 4.217 5 C -0.036 4.036 6 C -0.098 4.098 7 C 0.311 3.689 8 O -0.423 6.423 9 N -0.339 5.339 10 C -0.027 4.027 11 C -0.175 4.175 12 C 0.207 3.793 13 O -0.391 6.391 14 C -0.573 4.573 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.001 4.001 23 O -0.067 6.067 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.326 9.945 -8.936 16.301 hybrid contribution 1.392 -0.503 0.421 1.539 sum -7.934 9.441 -8.515 14.986 Atomic orbital electron populations 1.20268 0.85332 1.04001 1.03166 1.22365 0.93912 0.84242 1.06323 1.21486 0.92698 0.99155 1.09708 1.21457 0.98168 0.93654 1.08441 1.21530 0.82562 0.93901 1.05614 1.20097 0.93221 0.99852 0.96582 1.19860 0.79673 0.78953 0.90448 1.90701 1.52721 1.52445 1.46392 1.48594 1.29618 1.45927 1.09790 1.22251 0.93383 0.95774 0.91319 1.23181 0.96251 0.99272 0.98766 1.19662 0.85479 0.82790 0.91398 1.86146 1.39066 1.20458 1.93385 1.21480 1.15690 1.11504 1.08603 0.91662 1.24990 0.97050 0.95278 0.95685 1.69722 1.39027 1.15072 1.29608 0.86364 0.80729 0.78343 0.81559 1.19570 1.20776 1.20829 1.22429 0.98081 0.96508 0.83061 1.83933 1.16286 1.35066 1.71381 0.90348 0.90583 0.89518 0.83700 0.83669 0.87313 0.86184 0.92251 0.92669 0.89430 0.91268 0.76974 0.92280 0.90938 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.42 36.01 0.38 -0.25 16 2 C -0.02 -0.24 7.32 -35.62 -0.26 -0.50 16 3 C -0.21 -2.76 10.81 -39.70 -0.43 -3.19 16 4 C -0.20 -2.83 10.81 -39.70 -0.43 -3.26 16 5 C 0.01 0.22 5.81 -35.62 -0.21 0.02 16 6 C -0.06 -0.82 5.43 -29.03 -0.16 -0.98 16 7 C 0.52 9.97 7.84 -10.99 -0.09 9.89 16 8 O -0.54 -12.48 16.29 5.56 0.09 -12.39 16 9 N -0.61 -11.83 3.32 -170.38 -0.57 -12.40 16 10 C 0.10 1.64 6.48 -3.06 -0.02 1.62 16 11 C -0.14 -2.82 5.38 -24.89 -0.13 -2.95 16 12 C 0.25 5.86 0.87 -89.50 -0.08 5.78 16 13 O -0.58 -14.63 13.17 -35.23 -0.46 -15.10 16 14 C -0.53 -13.73 8.27 -34.44 -0.28 -14.01 16 15 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 16 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 17 N -0.90 -22.57 10.76 55.43 0.60 -21.97 16 18 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.12 2.69 6.10 -2.41 -0.01 2.67 16 23 O -0.17 -2.75 10.65 5.70 0.06 -2.69 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 27 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.89 7.55 -51.93 -0.39 1.50 16 34 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 35 H 0.38 9.48 7.56 45.56 0.34 9.83 16 36 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 37 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 38 H 0.07 1.69 8.04 -51.92 -0.42 1.27 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -30.68 324.29 -6.88 -37.57 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.65 Total: 10.59 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.82 Total: -3.43 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.03 Total: -34.37 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.31 Total: -30.18 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.68 -6.88 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.358 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds