Wall clock time and date at job start Fri Apr 10 2020 17:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78762 * 2 1 4 4 C 1.41385 * 106.83926 * 179.76997 * 3 2 1 5 5 C 1.34515 * 106.83992 * 0.23220 * 4 3 2 6 6 C 1.50704 * 125.79099 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46881 * 89.99747 * 6 5 4 8 8 O 1.21278 * 120.00342 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00062 * 180.02562 * 7 6 5 10 10 C 1.47026 * 125.64642 * 0.02598 * 9 7 6 11 11 C 1.54329 * 107.27158 * 181.02447 * 10 9 7 12 12 C 1.55156 * 102.94098 * 22.18916 * 11 10 9 13 13 O 1.42903 * 111.00108 * 82.57381 * 12 11 10 14 14 C 1.50702 * 111.00359 * 206.38697 * 12 11 10 15 15 H 1.07994 * 120.00240 * 118.54962 * 14 12 11 16 16 C 1.37877 * 119.99556 * 298.54967 * 14 12 11 17 17 N 1.31518 * 120.00584 * 359.97438 * 16 14 12 18 18 Si 1.86810 * 119.99537 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46979 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46769 * 119.99959 * 18 16 14 21 21 H 1.48496 * 109.47078 * 239.99993 * 18 16 14 22 22 C 1.47422 * 125.65360 * 179.71429 * 9 7 6 23 23 O 1.34305 * 125.78789 * 180.16213 * 2 1 3 24 24 H 1.09001 * 109.47378 * 89.99412 * 1 2 3 25 25 H 1.08999 * 109.47456 * 209.99695 * 1 2 3 26 26 H 1.09008 * 109.47140 * 329.99897 * 1 2 3 27 27 H 1.08002 * 126.58498 * 0.04167 * 3 2 1 28 28 H 1.08001 * 126.58081 * 180.18948 * 4 3 2 29 29 H 1.08999 * 109.46975 * 209.99542 * 6 5 4 30 30 H 1.08996 * 109.46842 * 329.99986 * 6 5 4 31 31 H 1.09007 * 109.88020 * 300.43566 * 10 9 7 32 32 H 1.08999 * 109.88455 * 61.44624 * 10 9 7 33 33 H 1.08997 * 110.71733 * 140.55542 * 11 10 9 34 34 H 1.09003 * 110.71541 * 263.82902 * 11 10 9 35 35 H 0.96701 * 113.99838 * 61.45859 * 13 12 11 36 36 H 0.96992 * 119.99728 * 180.02562 * 17 16 14 37 37 H 1.08992 * 110.37152 * 274.74964 * 22 9 7 38 38 H 1.09008 * 110.36484 * 37.07098 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 0.0054 5 6 3.5814 -0.7122 0.0032 6 6 4.7706 -1.6379 0.0067 7 6 5.1611 -1.9485 1.4287 8 8 4.5351 -1.4661 2.3487 9 7 6.2060 -2.7624 1.6781 10 6 7.0479 -3.4116 0.6626 11 6 8.0948 -4.2631 1.4114 12 6 7.4300 -4.4940 2.7943 13 8 6.5042 -5.5812 2.7423 14 6 8.4690 -4.7235 3.8615 15 1 8.5447 -4.0431 4.6967 16 6 9.3231 -5.8022 3.7714 17 7 9.2307 -6.6310 2.7544 18 14 10.6115 -6.0863 5.0939 19 1 10.5085 -5.0201 6.1224 20 1 10.3855 -7.4095 5.7289 21 1 11.9641 -6.0554 4.4819 22 6 6.6981 -3.1441 3.0143 23 8 2.2924 -1.0895 -0.0031 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.9666 2.1205 0.0006 28 1 4.5212 1.2433 0.0098 29 1 4.5127 -2.5626 -0.5095 30 1 5.6060 -1.1580 -0.5029 31 1 6.4354 -4.0516 0.0273 32 1 7.5467 -2.6557 0.0561 33 1 8.2585 -5.2112 0.8992 34 1 9.0309 -3.7154 1.5202 35 1 6.9062 -6.4295 2.5100 36 1 9.8313 -7.3900 2.6914 37 1 7.3901 -2.3919 3.3929 38 1 5.8633 -3.2736 3.7033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:32 Heat of formation + Delta-G solvation = -93.824861 kcal Electronic energy + Delta-G solvation = -21680.703494 eV Core-core repulsion = 18295.872028 eV Total energy + Delta-G solvation = -3384.831466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.54941 -41.01426 -38.96988 -36.08408 -34.21693 -34.16982 -33.94311 -31.81938 -30.69111 -29.85022 -27.20965 -25.73995 -23.85756 -22.75244 -21.70178 -21.19479 -20.29716 -19.11225 -18.31727 -17.62408 -17.01573 -16.97240 -16.84775 -16.32943 -15.86041 -15.38811 -15.16564 -14.87874 -14.31793 -13.98759 -13.81176 -13.75035 -13.73862 -13.54250 -13.50249 -13.21502 -13.02851 -12.98197 -12.64699 -12.53205 -12.45821 -12.24927 -11.83751 -11.27366 -11.06570 -10.79588 -10.64040 -10.14928 -9.60045 -9.21273 -8.23972 -6.38541 0.69104 1.40733 1.45537 1.54370 1.56443 1.61916 1.91841 2.21339 2.41015 3.00950 3.50771 3.65762 3.84747 3.97562 4.04528 4.12968 4.20957 4.35701 4.39719 4.42595 4.58375 4.60141 4.71174 4.71922 4.85325 4.87795 4.92938 5.06944 5.18235 5.25053 5.29978 5.46524 5.56479 5.66217 5.78098 6.08998 6.22391 6.57920 6.65641 7.09328 7.31667 7.40366 8.81912 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.046102 B = 0.003449 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.206499 B = 8115.991422 C = 8142.105217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.029 4.029 3 C -0.224 4.224 4 C -0.203 4.203 5 C -0.019 4.019 6 C -0.045 4.045 7 C 0.518 3.482 8 O -0.592 6.592 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.127 4.127 12 C 0.233 3.767 13 O -0.594 6.594 14 C -0.562 4.562 15 H 0.052 0.948 16 C 0.038 3.962 17 N -0.904 5.904 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.274 1.274 22 C 0.125 3.875 23 O -0.196 6.196 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.172 0.828 28 H 0.161 0.839 29 H 0.127 0.873 30 H 0.159 0.841 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.378 0.622 36 H 0.271 0.729 37 H 0.074 0.926 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 10.563 -11.159 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 C -0.243 4.243 4 C -0.222 4.222 5 C -0.069 4.069 6 C -0.084 4.084 7 C 0.308 3.692 8 O -0.473 6.473 9 N -0.341 5.341 10 C -0.021 4.021 11 C -0.165 4.165 12 C 0.193 3.807 13 O -0.402 6.402 14 C -0.600 4.600 15 H 0.070 0.930 16 C -0.163 4.163 17 N -0.543 5.543 18 Si 0.784 3.216 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.199 1.199 22 C 0.002 3.998 23 O -0.094 6.094 24 H 0.118 0.882 25 H 0.092 0.908 26 H 0.126 0.874 27 H 0.189 0.811 28 H 0.179 0.821 29 H 0.145 0.855 30 H 0.177 0.823 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.227 0.773 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.249 10.880 -10.633 17.804 hybrid contribution 1.314 -0.780 0.979 1.815 sum -7.935 10.100 -9.653 16.067 Atomic orbital electron populations 1.20483 0.82480 1.04926 1.04839 1.23280 0.95710 0.83806 1.05073 1.21892 0.92278 1.00473 1.09653 1.21848 0.99433 0.93622 1.07266 1.21852 0.82796 0.94736 1.07518 1.20143 0.94161 1.01069 0.92994 1.20783 0.78486 0.77687 0.92214 1.90672 1.54079 1.54156 1.48430 1.48658 1.30251 1.46196 1.08963 1.22346 0.92523 0.96661 0.90534 1.22958 0.96929 0.99492 0.97147 1.19836 0.85344 0.82653 0.92909 1.86134 1.39757 1.20767 1.93560 1.21682 1.16983 1.12091 1.09238 0.92974 1.25575 0.98420 0.94977 0.97372 1.69775 1.39308 1.15037 1.30195 0.85505 0.78953 0.77783 0.79319 1.20031 1.20736 1.19901 1.22178 0.96901 0.96199 0.84495 1.83916 1.16960 1.36558 1.71997 0.88195 0.90790 0.87410 0.81097 0.82090 0.85470 0.82340 0.90401 0.88323 0.90462 0.91723 0.77275 0.91958 0.90832 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.42 71.24 0.74 -0.36 16 2 C -0.03 -0.74 7.32 24.83 0.18 -0.55 16 3 C -0.22 -5.45 10.81 22.19 0.24 -5.21 16 4 C -0.20 -5.46 10.81 22.19 0.24 -5.22 16 5 C -0.02 -0.57 5.81 24.83 0.14 -0.43 16 6 C -0.04 -1.17 5.43 29.10 0.16 -1.01 16 7 C 0.52 19.32 7.84 87.66 0.69 20.00 16 8 O -0.59 -27.55 16.29 -3.02 -0.05 -27.60 16 9 N -0.61 -23.16 3.32 -811.34 -2.70 -25.86 16 10 C 0.10 3.20 6.48 86.73 0.56 3.76 16 11 C -0.13 -5.13 5.38 31.78 0.17 -4.95 16 12 C 0.23 11.16 0.87 -10.07 -0.01 11.15 16 13 O -0.59 -30.38 13.17 -148.98 -1.96 -32.34 16 14 C -0.56 -29.35 8.27 25.60 0.21 -29.14 16 15 H 0.05 2.77 7.79 -2.91 -0.02 2.75 16 16 C 0.04 1.93 5.29 84.65 0.45 2.38 16 17 N -0.90 -45.35 10.76 21.45 0.23 -45.12 16 18 Si 0.96 40.84 29.54 68.60 2.03 42.86 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 C 0.13 5.69 6.10 86.93 0.53 6.22 16 23 O -0.20 -6.23 10.65 -2.52 -0.03 -6.25 16 24 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 28 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.16 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.08 3.28 7.55 -2.39 -0.02 3.26 16 34 H 0.06 2.64 8.03 -2.39 -0.02 2.62 16 35 H 0.38 19.17 7.56 -74.06 -0.56 18.61 16 36 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 37 H 0.07 3.26 8.03 -2.39 -0.02 3.24 16 38 H 0.04 2.04 8.04 -2.38 -0.02 2.03 16 Total: -1.00 -68.00 324.29 2.34 -65.67 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.51 Total: 32.01 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 4.31 Total: -3.37 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -2.47 Total: -70.98 kcal Atomic # 8 Polarization: -64.16 SS G_CDS: -2.04 Total: -66.20 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -68.00 2.34 -65.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.159 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds