Wall clock time and date at job start Fri Apr 10 2020 17:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47164 * 2 1 4 4 O 1.33652 * 125.79936 * 269.69027 * 3 2 1 5 5 C 1.34223 * 110.90307 * 179.85574 * 4 3 2 6 6 C 1.34174 * 109.12467 * 0.41120 * 5 4 3 7 7 C 1.36417 * 125.79927 * 89.99879 * 3 2 1 8 8 C 1.47381 * 127.19495 * 359.97438 * 7 3 2 9 9 O 1.21614 * 119.99779 * 326.98079 * 8 7 3 10 10 N 1.34774 * 119.99848 * 146.98181 * 8 7 3 11 11 C 1.47419 * 125.64826 * 4.15847 * 10 8 7 12 12 C 1.54913 * 104.82911 * 204.08763 * 11 10 8 13 13 C 1.55152 * 101.58568 * 322.99184 * 12 11 10 14 14 O 1.42900 * 110.71856 * 277.13615 * 13 12 11 15 15 C 1.50697 * 110.72173 * 154.04243 * 13 12 11 16 16 H 1.08001 * 120.00066 * 359.97438 * 15 13 12 17 17 C 1.37876 * 120.00012 * 180.02562 * 15 13 12 18 18 N 1.31510 * 119.99966 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00160 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46982 * 59.99785 * 19 17 15 21 21 H 1.48499 * 109.47443 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47329 * 299.99700 * 19 17 15 23 23 C 1.47017 * 125.64598 * 183.84674 * 10 8 7 24 24 H 1.08998 * 109.47420 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47128 * 300.00176 * 1 2 3 26 26 H 1.09007 * 109.46596 * 60.00044 * 1 2 3 27 27 H 1.08998 * 109.47128 * 239.99823 * 2 1 3 28 28 H 1.08999 * 109.46390 * 119.99741 * 2 1 3 29 29 H 1.07999 * 125.43314 * 180.16735 * 5 4 3 30 30 H 1.07999 * 127.01795 * 179.77890 * 6 5 4 31 31 H 1.09000 * 110.36730 * 322.92593 * 11 10 8 32 32 H 1.09002 * 110.36973 * 85.14756 * 11 10 8 33 33 H 1.09001 * 111.00127 * 81.06965 * 12 11 10 34 34 H 1.09000 * 111.00459 * 204.91168 * 12 11 10 35 35 H 0.96701 * 114.00129 * 179.97438 * 14 13 12 36 36 H 0.97011 * 120.00297 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.88571 * 298.39389 * 23 10 8 38 38 H 1.09002 * 109.88437 * 59.56388 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2985 2.1560 -1.0840 5 6 2.7262 3.3806 -0.7390 6 6 2.7589 3.4740 0.5991 7 6 2.2984 2.1732 1.1064 8 6 2.1542 1.7670 2.5158 9 8 1.2719 0.9948 2.8388 10 7 3.0000 2.2513 3.4466 11 6 4.0536 3.2552 3.2109 12 6 5.0890 3.0154 4.3379 13 6 4.1693 2.6556 5.5346 14 8 3.6695 3.8385 6.1615 15 6 4.9030 1.7957 6.5312 16 1 5.9308 1.5172 6.3509 17 6 4.2618 1.3637 7.6728 18 7 3.0102 1.7024 7.8922 19 14 5.1710 0.2972 8.9079 20 1 6.3563 1.0319 9.4183 21 1 4.2669 -0.0300 10.0396 22 1 5.6127 -0.9576 8.2479 23 6 3.0206 1.8707 4.8665 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.0037 4.1642 -1.4284 30 1 3.0614 4.3300 1.1840 31 1 4.5130 3.1009 2.2345 32 1 3.6410 4.2617 3.2805 33 1 5.7507 2.1853 4.0903 34 1 5.6604 3.9207 4.5426 35 1 3.0886 3.6685 6.9157 36 1 2.5591 1.3987 8.6956 37 1 2.0707 2.1306 5.3338 38 1 3.2019 0.8000 4.9608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:38 Heat of formation + Delta-G solvation = -75.125287 kcal Electronic energy + Delta-G solvation = -22321.618170 eV Core-core repulsion = 18937.597578 eV Total energy + Delta-G solvation = -3384.020592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.48290 -39.18798 -37.14986 -34.38471 -33.93026 -32.60461 -32.17056 -30.03742 -28.72090 -27.85669 -25.49662 -23.82705 -23.12636 -21.75457 -20.81472 -19.50943 -18.54208 -17.28790 -17.09959 -16.17364 -15.86040 -15.45743 -14.97523 -14.75252 -14.41651 -14.17739 -13.86190 -13.13565 -13.04579 -12.95592 -12.83179 -12.52933 -12.24914 -11.91738 -11.63097 -11.51727 -11.43188 -11.05141 -10.94765 -10.78309 -10.64898 -10.53184 -10.18880 -9.69850 -9.41548 -9.33096 -8.67313 -8.53050 -8.32464 -7.84225 -6.29989 -4.38866 1.59075 2.20248 2.86426 3.21763 3.27519 3.29345 3.53210 3.75866 4.26061 4.54219 4.90587 4.96617 5.00812 5.13466 5.28707 5.42154 5.43870 5.54901 5.69438 5.75615 5.84743 5.87106 6.00311 6.04643 6.12139 6.20462 6.30800 6.40142 6.50385 6.75921 6.84265 6.98034 7.12294 7.26056 7.37541 7.72667 7.99073 8.23373 8.63412 8.76496 9.30150 9.42979 10.77770 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.004798 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.143051 B = 5833.818399 C = 6409.450774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C 0.060 3.940 4 O -0.178 6.178 5 C -0.048 4.048 6 C -0.185 4.185 7 C -0.223 4.223 8 C 0.590 3.410 9 O -0.548 6.548 10 N -0.602 5.602 11 C 0.102 3.898 12 C -0.119 4.119 13 C 0.249 3.751 14 O -0.587 6.587 15 C -0.538 4.538 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.103 3.897 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.205 0.795 30 H 0.158 0.842 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.386 0.614 36 H 0.272 0.728 37 H 0.065 0.935 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 1.564 -14.962 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C 0.007 3.993 4 O -0.075 6.075 5 C -0.113 4.113 6 C -0.204 4.204 7 C -0.227 4.227 8 C 0.379 3.621 9 O -0.428 6.428 10 N -0.334 5.334 11 C -0.021 4.021 12 C -0.157 4.157 13 C 0.209 3.791 14 O -0.397 6.397 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.019 4.019 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.222 0.778 30 H 0.175 0.825 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.671 1.301 -15.433 15.502 hybrid contribution 0.196 -0.500 1.301 1.407 sum -0.475 0.801 -14.132 14.163 Atomic orbital electron populations 1.21727 0.93275 1.02443 1.02826 1.20190 0.97164 0.86464 1.04123 1.22688 0.98821 0.94698 0.83065 1.83717 1.65719 1.23064 1.34974 1.23794 1.05048 0.86194 0.96291 1.23029 1.04921 0.98160 0.94310 1.21298 1.11334 0.95858 0.94201 1.16879 0.81239 0.80809 0.83185 1.90748 1.33590 1.36960 1.81549 1.48572 1.32874 1.41233 1.10698 1.22428 0.88927 0.91773 0.98964 1.22776 0.96803 1.01736 0.94402 1.19476 0.87813 0.82899 0.88960 1.86069 1.69620 1.33402 1.50595 1.21492 0.99170 1.31985 1.05014 0.91538 1.25073 0.94781 0.95412 0.97958 1.69569 1.10430 1.45735 1.27798 0.86444 0.79542 0.80564 0.80267 1.19964 1.21036 1.20013 1.23047 1.01641 1.00442 0.76725 0.91665 0.90893 0.92899 0.90262 0.88138 0.77793 0.82485 0.91641 0.91862 0.90573 0.90501 0.76188 0.91819 0.91678 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.90 37.16 0.37 -1.41 16 2 C -0.04 -0.55 5.86 -27.88 -0.16 -0.71 16 3 C 0.06 0.89 6.62 -34.96 -0.23 0.66 16 4 O -0.18 -2.35 10.52 7.63 0.08 -2.27 16 5 C -0.05 -0.53 12.03 29.30 0.35 -0.18 16 6 C -0.18 -2.51 9.14 -37.46 -0.34 -2.86 16 7 C -0.22 -3.76 5.80 -103.28 -0.60 -4.36 16 8 C 0.59 12.23 7.58 -12.54 -0.10 12.13 16 9 O -0.55 -12.73 15.78 5.26 0.08 -12.65 16 10 N -0.60 -12.72 3.33 -171.80 -0.57 -13.29 16 11 C 0.10 1.84 5.40 -2.53 -0.01 1.83 16 12 C -0.12 -2.38 6.23 -24.58 -0.15 -2.54 16 13 C 0.25 6.03 0.86 -89.93 -0.08 5.96 16 14 O -0.59 -14.86 13.07 -35.23 -0.46 -15.32 16 15 C -0.54 -14.03 8.12 -34.44 -0.28 -14.31 16 16 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 18 N -0.90 -23.83 10.97 55.43 0.61 -23.22 16 19 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.10 2.51 5.54 -3.06 -0.02 2.49 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 1.09 7.59 -51.93 -0.39 0.69 16 26 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 1.45 7.47 -51.93 -0.39 1.07 16 29 H 0.21 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.16 1.92 6.71 -52.49 -0.35 1.57 16 31 H 0.07 1.01 6.56 -51.93 -0.34 0.67 16 32 H 0.06 1.10 7.76 -51.93 -0.40 0.70 16 33 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.39 10.10 6.98 45.56 0.32 10.41 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.06 1.74 8.07 -51.93 -0.42 1.32 16 38 H 0.07 1.73 7.82 -51.93 -0.41 1.32 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -29.90 316.57 -6.31 -36.22 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -4.46 Total: 11.99 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.35 Total: -1.55 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.04 Total: -36.52 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.30 Total: -30.24 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.90 -6.31 -36.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.909 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds