Wall clock time and date at job start Fri Apr 10 2020 17:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47164 * 2 1 4 4 O 1.33652 * 125.79936 * 269.69027 * 3 2 1 5 5 C 1.34223 * 110.90307 * 179.85574 * 4 3 2 6 6 C 1.34174 * 109.12467 * 0.41120 * 5 4 3 7 7 C 1.36417 * 125.79927 * 89.99879 * 3 2 1 8 8 C 1.47381 * 127.19495 * 359.97438 * 7 3 2 9 9 O 1.21614 * 119.99779 * 326.98079 * 8 7 3 10 10 N 1.34774 * 119.99848 * 146.98181 * 8 7 3 11 11 C 1.47419 * 125.64826 * 4.15847 * 10 8 7 12 12 C 1.54913 * 104.82911 * 204.08763 * 11 10 8 13 13 C 1.55152 * 101.58568 * 322.99184 * 12 11 10 14 14 O 1.42900 * 110.71856 * 277.13615 * 13 12 11 15 15 C 1.50697 * 110.72173 * 154.04243 * 13 12 11 16 16 H 1.08001 * 120.00066 * 359.97438 * 15 13 12 17 17 C 1.37876 * 120.00012 * 180.02562 * 15 13 12 18 18 N 1.31510 * 119.99966 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00160 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46982 * 59.99785 * 19 17 15 21 21 H 1.48499 * 109.47443 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47329 * 299.99700 * 19 17 15 23 23 C 1.47017 * 125.64598 * 183.84674 * 10 8 7 24 24 H 1.08998 * 109.47420 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47128 * 300.00176 * 1 2 3 26 26 H 1.09007 * 109.46596 * 60.00044 * 1 2 3 27 27 H 1.08998 * 109.47128 * 239.99823 * 2 1 3 28 28 H 1.08999 * 109.46390 * 119.99741 * 2 1 3 29 29 H 1.07999 * 125.43314 * 180.16735 * 5 4 3 30 30 H 1.07999 * 127.01795 * 179.77890 * 6 5 4 31 31 H 1.09000 * 110.36730 * 322.92593 * 11 10 8 32 32 H 1.09002 * 110.36973 * 85.14756 * 11 10 8 33 33 H 1.09001 * 111.00127 * 81.06965 * 12 11 10 34 34 H 1.09000 * 111.00459 * 204.91168 * 12 11 10 35 35 H 0.96701 * 114.00129 * 179.97438 * 14 13 12 36 36 H 0.97011 * 120.00297 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.88571 * 298.39389 * 23 10 8 38 38 H 1.09002 * 109.88437 * 59.56388 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2985 2.1560 -1.0840 5 6 2.7262 3.3806 -0.7390 6 6 2.7589 3.4740 0.5991 7 6 2.2984 2.1732 1.1064 8 6 2.1542 1.7670 2.5158 9 8 1.2719 0.9948 2.8388 10 7 3.0000 2.2513 3.4466 11 6 4.0536 3.2552 3.2109 12 6 5.0890 3.0154 4.3379 13 6 4.1693 2.6556 5.5346 14 8 3.6695 3.8385 6.1615 15 6 4.9030 1.7957 6.5312 16 1 5.9308 1.5172 6.3509 17 6 4.2618 1.3637 7.6728 18 7 3.0102 1.7024 7.8922 19 14 5.1710 0.2972 8.9079 20 1 6.3563 1.0319 9.4183 21 1 4.2669 -0.0300 10.0396 22 1 5.6127 -0.9576 8.2479 23 6 3.0206 1.8707 4.8665 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.0037 4.1642 -1.4284 30 1 3.0614 4.3300 1.1840 31 1 4.5130 3.1009 2.2345 32 1 3.6410 4.2617 3.2805 33 1 5.7507 2.1853 4.0903 34 1 5.6604 3.9207 4.5426 35 1 3.0886 3.6685 6.9157 36 1 2.5591 1.3987 8.6956 37 1 2.0707 2.1306 5.3338 38 1 3.2019 0.8000 4.9608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:38 Heat of formation + Delta-G solvation = -95.963792 kcal Electronic energy + Delta-G solvation = -22322.521795 eV Core-core repulsion = 18937.597578 eV Total energy + Delta-G solvation = -3384.924217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.54641 -40.86312 -38.91312 -36.17430 -35.01921 -34.19225 -33.75464 -31.72481 -29.86675 -29.58628 -27.32608 -25.23805 -24.35239 -23.09724 -22.08555 -21.31367 -19.78602 -19.18581 -18.52628 -17.42925 -17.23211 -17.14469 -16.51359 -16.43368 -15.96836 -15.33677 -15.15380 -14.81161 -14.76504 -14.62223 -14.11317 -13.72394 -13.52453 -13.44923 -13.33841 -13.21654 -12.84521 -12.52520 -12.47586 -12.33794 -12.31064 -12.12488 -11.96212 -11.24583 -11.13749 -10.75238 -10.64022 -10.31717 -9.72724 -9.44316 -8.28749 -6.45318 0.39599 1.16627 1.42208 1.42587 1.51035 1.80405 2.03269 2.22836 2.37781 2.97416 3.56887 3.59650 3.78314 3.94245 4.08624 4.13805 4.21935 4.28545 4.34436 4.42422 4.53768 4.65212 4.66824 4.75958 4.92625 4.96446 5.00960 5.07133 5.08908 5.22640 5.30917 5.34267 5.40268 5.48379 5.72948 6.01026 6.07220 6.58234 6.65226 7.12610 7.26800 7.35833 8.77441 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.004798 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.143051 B = 5833.818399 C = 6409.450774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C 0.064 3.936 4 O -0.173 6.173 5 C -0.018 4.018 6 C -0.205 4.205 7 C -0.258 4.258 8 C 0.584 3.416 9 O -0.587 6.587 10 N -0.609 5.609 11 C 0.110 3.890 12 C -0.113 4.113 13 C 0.235 3.765 14 O -0.590 6.590 15 C -0.560 4.560 16 H 0.069 0.931 17 C 0.026 3.974 18 N -0.919 5.919 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.121 3.879 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.258 0.742 30 H 0.170 0.830 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.378 0.622 36 H 0.272 0.728 37 H 0.029 0.971 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 2.303 -17.559 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C 0.011 3.989 4 O -0.069 6.069 5 C -0.083 4.083 6 C -0.224 4.224 7 C -0.262 4.262 8 C 0.376 3.624 9 O -0.470 6.470 10 N -0.340 5.340 11 C -0.012 4.012 12 C -0.151 4.151 13 C 0.194 3.806 14 O -0.399 6.399 15 C -0.598 4.598 16 H 0.087 0.913 17 C -0.175 4.175 18 N -0.558 5.558 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.003 4.003 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.130 0.870 28 H 0.095 0.905 29 H 0.273 0.727 30 H 0.187 0.813 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.229 0.771 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.730 2.065 -18.061 18.193 hybrid contribution -0.273 -0.719 2.043 2.183 sum 0.457 1.346 -16.018 16.081 Atomic orbital electron populations 1.21676 0.92828 1.03384 1.01825 1.20259 0.97499 0.85928 1.04551 1.22875 0.97774 0.95241 0.83007 1.83768 1.65351 1.23789 1.33989 1.24728 1.01558 0.85749 0.96224 1.23176 1.06452 0.97218 0.95517 1.21126 1.14488 0.98497 0.92085 1.17543 0.80265 0.79887 0.84751 1.90711 1.35086 1.38659 1.82543 1.48629 1.33999 1.42099 1.09321 1.22544 0.87538 0.91288 0.99822 1.22776 0.96737 1.02684 0.92917 1.19696 0.88285 0.82586 0.90023 1.86056 1.69461 1.34026 1.50329 1.21836 0.99493 1.32596 1.05828 0.91300 1.25839 0.95454 0.96505 0.99706 1.69680 1.11546 1.46461 1.28142 0.85490 0.78513 0.78945 0.78005 1.19129 1.20885 1.19772 1.22564 1.00012 0.98589 0.79107 0.89861 0.94420 0.91173 0.86953 0.90495 0.72673 0.81303 0.88234 0.90884 0.89901 0.88919 0.77091 0.91890 0.95297 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.90 71.98 0.71 -2.61 16 2 C -0.05 -1.13 5.86 29.85 0.17 -0.96 16 3 C 0.06 1.80 6.62 25.26 0.17 1.96 16 4 O -0.17 -3.91 10.52 4.40 0.05 -3.87 16 5 C -0.02 -0.31 12.03 66.89 0.80 0.49 16 6 C -0.20 -4.95 9.14 23.65 0.22 -4.73 16 7 C -0.26 -8.46 5.80 -18.99 -0.11 -8.57 16 8 C 0.58 24.90 7.58 86.65 0.66 25.56 16 9 O -0.59 -28.87 15.78 -4.08 -0.06 -28.93 16 10 N -0.61 -26.28 3.33 -815.70 -2.71 -28.99 16 11 C 0.11 3.80 5.40 86.86 0.47 4.27 16 12 C -0.11 -4.41 6.23 31.99 0.20 -4.21 16 13 C 0.23 11.58 0.86 -10.35 -0.01 11.57 16 14 O -0.59 -30.52 13.07 -148.98 -1.95 -32.47 16 15 C -0.56 -29.62 8.12 25.60 0.21 -29.41 16 16 H 0.07 3.52 7.76 -2.91 -0.02 3.50 16 17 C 0.03 1.35 5.28 84.66 0.45 1.80 16 18 N -0.92 -50.55 10.97 21.45 0.24 -50.31 16 19 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 C 0.12 6.17 5.54 86.73 0.48 6.65 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.04 1.15 7.59 -2.39 -0.02 1.13 16 26 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.08 2.29 7.47 -2.39 -0.02 2.27 16 29 H 0.26 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.17 3.58 6.71 -2.91 -0.02 3.56 16 31 H 0.10 2.80 6.56 -2.39 -0.02 2.78 16 32 H 0.07 2.40 7.76 -2.39 -0.02 2.38 16 33 H 0.08 3.09 8.03 -2.39 -0.02 3.07 16 34 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.38 20.60 6.98 -74.06 -0.52 20.08 16 36 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 37 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 38 H 0.03 1.95 7.82 -2.39 -0.02 1.94 16 Total: -1.00 -68.38 316.57 2.56 -65.81 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.56 Total: 32.77 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 4.42 Total: 1.81 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -2.48 Total: -79.31 kcal Atomic # 8 Polarization: -63.30 SS G_CDS: -1.97 Total: -65.27 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -68.38 2.56 -65.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.149 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds