Wall clock time and date at job start Fri Apr 10 2020 17:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37725 * 120.04573 * 2 1 4 4 C 1.38978 * 120.08889 * 179.97438 * 3 2 1 5 5 O 1.35711 * 119.90815 * 179.97438 * 4 3 2 6 6 C 1.42904 * 116.99712 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46836 * 180.02562 * 6 5 4 8 8 O 1.42895 * 109.47540 * 65.00167 * 7 6 5 9 9 C 1.42898 * 114.00273 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47351 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99910 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00290 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99882 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47075 * 89.99639 * 14 12 10 16 16 H 1.48500 * 109.47255 * 209.99547 * 14 12 10 17 17 H 1.48503 * 109.47190 * 329.99589 * 14 12 10 18 18 C 1.39014 * 120.17601 * 359.69843 * 4 3 2 19 19 C 1.37683 * 120.09087 * 0.55562 * 18 4 3 20 20 C 1.39714 * 120.04500 * 179.97438 * 2 1 3 21 21 C 1.47598 * 120.08703 * 0.04784 * 20 2 1 22 22 N 1.34779 * 120.00172 * 173.71216 * 21 20 2 23 23 O 1.21584 * 120.00288 * 353.70913 * 21 20 2 24 24 H 1.08998 * 109.47042 * 263.41301 * 1 2 3 25 25 H 1.08996 * 109.46843 * 23.41433 * 1 2 3 26 26 H 1.09004 * 109.46915 * 143.41257 * 1 2 3 27 27 H 1.07997 * 119.95268 * 359.97029 * 3 2 1 28 28 H 1.09007 * 109.46990 * 299.99586 * 6 5 4 29 29 H 1.08993 * 109.47372 * 60.00076 * 6 5 4 30 30 H 1.09004 * 109.46688 * 184.99872 * 7 6 5 31 31 H 1.09003 * 109.47345 * 304.99410 * 7 6 5 32 32 H 1.09001 * 109.47300 * 299.99814 * 9 8 7 33 33 H 1.08999 * 109.47141 * 59.99570 * 9 8 7 34 34 H 0.96998 * 120.00431 * 180.02562 * 13 12 10 35 35 H 1.08001 * 119.95477 * 180.27516 * 18 4 3 36 36 H 1.07990 * 120.04517 * 179.74815 * 19 18 4 37 37 H 0.97012 * 119.99871 * 359.97438 * 22 21 20 38 38 H 0.96995 * 120.00861 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1922 0.0000 4 6 3.5863 1.1932 0.0005 5 8 4.2621 2.3701 0.0000 6 6 5.6894 2.2986 0.0012 7 6 6.2708 3.7138 0.0010 8 8 5.9243 4.3714 1.2214 9 6 6.4210 5.7074 1.3232 10 6 5.9980 6.3015 2.6420 11 1 5.4084 5.7174 3.3331 12 6 6.3628 7.5911 2.9658 13 7 7.0803 8.3026 2.1240 14 14 5.8379 8.3278 4.6002 15 1 6.8721 8.0420 5.6269 16 1 5.6794 9.7969 4.4529 17 1 4.5450 7.7301 5.0201 18 6 4.2860 -0.0080 0.0074 19 6 3.6041 -1.2041 0.0021 20 6 2.2065 -1.2094 0.0005 21 6 1.4715 -2.4893 0.0000 22 7 2.1420 -3.6515 -0.1273 23 8 0.2610 -2.4954 0.1145 24 1 -0.3633 -0.1179 1.0209 25 1 -0.3633 0.9430 -0.4084 26 1 -0.3633 -0.8252 -0.6126 27 1 1.6565 2.1274 -0.0005 28 1 6.0258 1.7681 0.8920 29 1 6.0272 1.7665 -0.8880 30 1 7.3559 3.6607 -0.0876 31 1 5.8644 4.2735 -0.8414 32 1 7.5092 5.6961 1.2617 33 1 6.0173 6.3082 0.5083 34 1 7.3373 9.2097 2.3519 35 1 5.3660 -0.0030 0.0123 36 1 4.1484 -2.1368 0.0034 37 1 3.1078 -3.6468 -0.2190 38 1 1.6590 -4.4927 -0.1280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594912553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:42 Heat of formation + Delta-G solvation = -104.534902 kcal Electronic energy + Delta-G solvation = -20595.829240 eV Core-core repulsion = 17210.533352 eV Total energy + Delta-G solvation = -3385.295888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66933 -39.44889 -37.46088 -36.45943 -34.31858 -32.81300 -32.36333 -31.04535 -29.38737 -27.35242 -26.82395 -23.76945 -23.09045 -22.32945 -21.50931 -20.49941 -18.17284 -17.85206 -17.12023 -16.49294 -16.30462 -15.77376 -15.26488 -15.19125 -14.93225 -14.66159 -14.25365 -14.04803 -13.72217 -13.36875 -13.26545 -12.92864 -12.64065 -12.21387 -12.09997 -11.88224 -11.55868 -11.07354 -11.04105 -10.85691 -10.76307 -10.57696 -10.07166 -10.01688 -9.85360 -9.15484 -8.99277 -8.90676 -8.32336 -8.24188 -6.13746 -4.15504 0.78129 1.15755 2.70845 3.15725 3.29412 3.30229 3.34507 3.40469 3.66381 4.29960 4.45998 4.59973 4.65417 4.69537 4.91731 5.08299 5.21063 5.22988 5.28967 5.31953 5.55873 5.72771 5.74581 5.79853 5.81924 5.93296 6.01383 6.06999 6.17977 6.39613 6.53188 6.56512 7.01698 7.07189 7.36206 7.38424 7.76343 8.03427 8.10075 8.49263 8.97017 9.49443 10.97812 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.028651 B = 0.002851 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.037094 B = 9819.331497 C =10347.451078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.020 3.980 3 C -0.169 4.169 4 C 0.177 3.823 5 O -0.292 6.292 6 C 0.062 3.938 7 C 0.062 3.938 8 O -0.390 6.390 9 C 0.195 3.805 10 C -0.515 4.515 11 H 0.067 0.933 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.909 3.091 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.230 4.230 19 C -0.038 4.038 20 C -0.200 4.200 21 C 0.569 3.431 22 N -0.856 5.856 23 O -0.541 6.541 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.140 0.860 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.264 0.736 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.399 0.601 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -21.914 -7.738 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.019 3.981 3 C -0.187 4.187 4 C 0.129 3.871 5 O -0.204 6.204 6 C -0.012 4.012 7 C -0.016 4.016 8 O -0.310 6.310 9 C 0.121 3.879 10 C -0.554 4.554 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.736 3.264 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.249 4.249 19 C -0.057 4.057 20 C -0.203 4.203 21 C 0.357 3.643 22 N -0.420 5.420 23 O -0.419 6.419 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.158 0.842 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.228 0.772 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.324 -21.409 -7.527 23.559 hybrid contribution 0.759 0.146 0.546 0.947 sum -5.565 -21.264 -6.981 23.062 Atomic orbital electron populations 1.21107 0.89648 1.03178 1.03799 1.19777 0.96683 0.90548 0.91106 1.20375 0.91000 0.98821 1.08528 1.19400 0.92027 0.85185 0.90496 1.86237 1.20808 1.26998 1.86322 1.23062 0.77669 0.98994 1.01508 1.22285 0.97605 0.91030 0.90676 1.87924 1.77531 1.30793 1.34748 1.20240 0.93456 0.76654 0.97595 1.21049 1.33982 0.98257 1.02063 0.91491 1.24949 0.95083 0.96575 0.97885 1.69955 1.37497 1.10427 1.35943 0.86322 0.79189 0.78041 0.82880 1.20450 1.21034 1.19551 1.21194 1.00667 0.91900 1.11139 1.20957 0.92636 0.97631 0.94485 1.19488 0.93359 0.92968 1.14499 1.18183 0.86866 0.84120 0.75097 1.43784 1.11796 1.08561 1.77865 1.90765 1.13893 1.87295 1.49992 0.90380 0.92050 0.88674 0.84223 0.90974 0.91010 0.92002 0.93167 0.97621 0.97490 0.92609 0.84735 0.85627 0.77164 0.76698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.72 36.00 0.31 -1.07 16 2 C 0.02 0.25 5.91 -104.26 -0.62 -0.37 16 3 C -0.17 -2.25 9.60 -39.50 -0.38 -2.63 16 4 C 0.18 2.44 6.70 -39.02 -0.26 2.18 16 5 O -0.29 -4.73 10.09 -23.69 -0.24 -4.97 16 6 C 0.06 0.87 5.12 37.16 0.19 1.06 16 7 C 0.06 1.08 6.32 37.16 0.23 1.32 16 8 O -0.39 -9.35 10.29 -40.08 -0.41 -9.76 16 9 C 0.19 5.30 5.69 36.01 0.20 5.51 16 10 C -0.52 -15.23 9.43 -34.44 -0.32 -15.55 16 11 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 14 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.23 -2.52 9.01 -39.50 -0.36 -2.88 16 19 C -0.04 -0.36 9.51 -39.22 -0.37 -0.73 16 20 C -0.20 -2.24 5.87 -104.96 -0.62 -2.85 16 21 C 0.57 6.13 7.97 -12.44 -0.10 6.03 16 22 N -0.86 -5.43 8.82 30.47 0.27 -5.16 16 23 O -0.54 -7.46 14.17 5.29 0.07 -7.38 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 26 H 0.09 1.16 5.85 -51.93 -0.30 0.86 16 27 H 0.14 1.80 8.05 -52.49 -0.42 1.37 16 28 H 0.07 0.96 7.64 -51.93 -0.40 0.56 16 29 H 0.07 0.73 7.66 -51.93 -0.40 0.34 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.13 1.20 6.28 -52.49 -0.33 0.87 16 36 H 0.13 0.69 6.45 -52.49 -0.34 0.35 16 37 H 0.40 1.47 6.89 -40.81 -0.28 1.19 16 38 H 0.40 1.98 8.93 -40.82 -0.36 1.62 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -34.81 325.45 -6.78 -41.59 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.91 Total: -1.56 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -2.18 Total: -8.46 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 1.01 Total: -31.23 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.58 Total: -22.11 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.81 -6.78 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594912553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.943 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds