Wall clock time and date at job start Fri Apr 10 2020 17:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37725 * 120.04573 * 2 1 4 4 C 1.38978 * 120.08889 * 179.97438 * 3 2 1 5 5 O 1.35711 * 119.90815 * 179.97438 * 4 3 2 6 6 C 1.42904 * 116.99712 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46836 * 180.02562 * 6 5 4 8 8 O 1.42895 * 109.47540 * 65.00167 * 7 6 5 9 9 C 1.42898 * 114.00273 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47351 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99910 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00290 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99882 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47075 * 89.99639 * 14 12 10 16 16 H 1.48500 * 109.47255 * 209.99547 * 14 12 10 17 17 H 1.48503 * 109.47190 * 329.99589 * 14 12 10 18 18 C 1.39014 * 120.17601 * 359.69843 * 4 3 2 19 19 C 1.37683 * 120.09087 * 0.55562 * 18 4 3 20 20 C 1.39714 * 120.04500 * 179.97438 * 2 1 3 21 21 C 1.47598 * 120.08703 * 0.04784 * 20 2 1 22 22 N 1.34779 * 120.00172 * 173.71216 * 21 20 2 23 23 O 1.21584 * 120.00288 * 353.70913 * 21 20 2 24 24 H 1.08998 * 109.47042 * 263.41301 * 1 2 3 25 25 H 1.08996 * 109.46843 * 23.41433 * 1 2 3 26 26 H 1.09004 * 109.46915 * 143.41257 * 1 2 3 27 27 H 1.07997 * 119.95268 * 359.97029 * 3 2 1 28 28 H 1.09007 * 109.46990 * 299.99586 * 6 5 4 29 29 H 1.08993 * 109.47372 * 60.00076 * 6 5 4 30 30 H 1.09004 * 109.46688 * 184.99872 * 7 6 5 31 31 H 1.09003 * 109.47345 * 304.99410 * 7 6 5 32 32 H 1.09001 * 109.47300 * 299.99814 * 9 8 7 33 33 H 1.08999 * 109.47141 * 59.99570 * 9 8 7 34 34 H 0.96998 * 120.00431 * 180.02562 * 13 12 10 35 35 H 1.08001 * 119.95477 * 180.27516 * 18 4 3 36 36 H 1.07990 * 120.04517 * 179.74815 * 19 18 4 37 37 H 0.97012 * 119.99871 * 359.97438 * 22 21 20 38 38 H 0.96995 * 120.00861 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1922 0.0000 4 6 3.5863 1.1932 0.0005 5 8 4.2621 2.3701 0.0000 6 6 5.6894 2.2986 0.0012 7 6 6.2708 3.7138 0.0010 8 8 5.9243 4.3714 1.2214 9 6 6.4210 5.7074 1.3232 10 6 5.9980 6.3015 2.6420 11 1 5.4084 5.7174 3.3331 12 6 6.3628 7.5911 2.9658 13 7 7.0803 8.3026 2.1240 14 14 5.8379 8.3278 4.6002 15 1 6.8721 8.0420 5.6269 16 1 5.6794 9.7969 4.4529 17 1 4.5450 7.7301 5.0201 18 6 4.2860 -0.0080 0.0074 19 6 3.6041 -1.2041 0.0021 20 6 2.2065 -1.2094 0.0005 21 6 1.4715 -2.4893 0.0000 22 7 2.1420 -3.6515 -0.1273 23 8 0.2610 -2.4954 0.1145 24 1 -0.3633 -0.1179 1.0209 25 1 -0.3633 0.9430 -0.4084 26 1 -0.3633 -0.8252 -0.6126 27 1 1.6565 2.1274 -0.0005 28 1 6.0258 1.7681 0.8920 29 1 6.0272 1.7665 -0.8880 30 1 7.3559 3.6607 -0.0876 31 1 5.8644 4.2735 -0.8414 32 1 7.5092 5.6961 1.2617 33 1 6.0173 6.3082 0.5083 34 1 7.3373 9.2097 2.3519 35 1 5.3660 -0.0030 0.0123 36 1 4.1484 -2.1368 0.0034 37 1 3.1078 -3.6468 -0.2190 38 1 1.6590 -4.4927 -0.1280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594912553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:41 Heat of formation + Delta-G solvation = -130.274882 kcal Electronic energy + Delta-G solvation = -20596.945410 eV Core-core repulsion = 17210.533352 eV Total energy + Delta-G solvation = -3386.412057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57494 -40.41220 -38.74661 -37.91457 -35.06923 -34.96813 -33.22758 -32.20917 -30.60527 -29.01393 -28.09011 -24.68743 -24.61982 -24.09875 -22.44097 -21.40277 -19.02489 -18.78726 -18.64477 -17.89386 -17.75820 -16.83316 -16.76433 -16.23222 -16.15654 -16.03263 -15.77357 -15.22757 -14.93842 -14.34669 -14.23972 -14.14593 -13.84488 -13.54405 -13.36515 -13.14967 -12.95716 -12.84425 -12.67743 -12.44420 -12.04742 -11.87989 -11.73480 -11.30227 -10.90936 -10.81661 -10.61131 -10.27987 -9.88289 -9.27219 -8.34240 -6.46447 -0.11560 0.28705 1.39071 1.41694 1.53933 1.84812 2.13506 2.33322 2.61718 2.78887 2.99649 3.09265 3.68186 3.78796 3.93158 3.98802 4.10901 4.12931 4.31603 4.42778 4.45230 4.52644 4.67804 4.73798 4.81379 4.84240 4.91287 5.05492 5.15868 5.17256 5.27422 5.50831 5.52525 5.66017 5.93576 5.95331 6.37575 6.47336 6.50620 6.78665 7.25407 7.35573 8.77957 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.028651 B = 0.002851 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.037094 B = 9819.331497 C =10347.451078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.006 3.994 3 C -0.187 4.187 4 C 0.152 3.848 5 O -0.327 6.327 6 C 0.067 3.933 7 C 0.048 3.952 8 O -0.410 6.410 9 C 0.209 3.791 10 C -0.551 4.551 11 H 0.059 0.941 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.982 3.018 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.267 1.267 18 C -0.227 4.227 19 C -0.024 4.024 20 C -0.206 4.206 21 C 0.566 3.434 22 N -0.832 5.832 23 O -0.578 6.578 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.047 0.953 32 H -0.005 1.005 33 H -0.015 1.015 34 H 0.272 0.728 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.415 0.585 38 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 -23.848 -7.323 25.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.004 3.996 3 C -0.206 4.206 4 C 0.106 3.894 5 O -0.241 6.241 6 C -0.007 4.007 7 C -0.029 4.029 8 O -0.330 6.330 9 C 0.134 3.866 10 C -0.589 4.589 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.568 5.568 14 Si 0.805 3.195 15 H -0.190 1.190 16 H -0.198 1.198 17 H -0.192 1.192 18 C -0.245 4.245 19 C -0.043 4.043 20 C -0.209 4.209 21 C 0.353 3.647 22 N -0.397 5.397 23 O -0.460 6.460 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.147 0.853 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.012 0.988 33 H 0.003 0.997 34 H 0.080 0.920 35 H 0.178 0.822 36 H 0.190 0.810 37 H 0.247 0.753 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.319 -23.398 -7.136 25.034 hybrid contribution 0.473 0.631 0.323 0.852 sum -4.845 -22.767 -6.813 24.254 Atomic orbital electron populations 1.21040 0.89559 1.03278 1.03347 1.19915 0.97021 0.90961 0.91664 1.20415 0.91465 0.98923 1.09796 1.19620 0.92108 0.85557 0.92151 1.86167 1.21830 1.28844 1.87221 1.23122 0.76978 0.96579 1.04031 1.22707 0.99493 0.92665 0.87997 1.87865 1.77814 1.29188 1.38176 1.19846 0.92436 0.78237 0.96105 1.21391 1.35017 0.99339 1.03142 0.92321 1.25936 0.94562 0.96652 1.01954 1.70051 1.37880 1.10976 1.37902 0.85203 0.79033 0.77411 0.77902 1.19021 1.19805 1.19189 1.21496 1.01918 0.91106 1.09983 1.21396 0.91817 0.99010 0.92053 1.19728 0.94461 0.92782 1.13945 1.18189 0.86448 0.84950 0.75091 1.43563 1.12668 1.07666 1.75762 1.90755 1.15456 1.87830 1.51937 0.90926 0.91279 0.89370 0.85270 0.90173 0.86491 0.89752 0.93494 0.98774 0.99689 0.91951 0.82191 0.81047 0.75256 0.75521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 8.72 71.24 0.62 -2.13 16 2 C 0.01 0.14 5.91 -19.63 -0.12 0.02 16 3 C -0.19 -5.13 9.60 22.33 0.21 -4.92 16 4 C 0.15 4.12 6.70 22.63 0.15 4.27 16 5 O -0.33 -10.58 10.09 -85.69 -0.86 -11.45 16 6 C 0.07 1.76 5.12 71.98 0.37 2.12 16 7 C 0.05 1.67 6.32 71.98 0.45 2.13 16 8 O -0.41 -20.10 10.29 -144.34 -1.49 -21.59 16 9 C 0.21 11.74 5.69 71.24 0.41 12.15 16 10 C -0.55 -33.29 9.43 25.60 0.24 -33.04 16 11 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 12 C 0.01 0.44 5.46 84.65 0.46 0.91 16 13 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 14 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 C -0.23 -4.33 9.01 22.32 0.20 -4.12 16 19 C -0.02 -0.37 9.51 22.51 0.21 -0.16 16 20 C -0.21 -4.26 5.87 -20.08 -0.12 -4.38 16 21 C 0.57 11.16 7.97 86.71 0.69 11.85 16 22 N -0.83 -7.92 8.82 -175.77 -1.55 -9.47 16 23 O -0.58 -15.64 14.17 -3.98 -0.06 -15.70 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.45 8.04 -2.39 -0.02 1.43 16 26 H 0.09 2.22 5.85 -2.38 -0.01 2.21 16 27 H 0.13 3.62 8.05 -2.91 -0.02 3.59 16 28 H 0.08 1.95 7.64 -2.38 -0.02 1.94 16 29 H 0.12 1.99 7.66 -2.39 -0.02 1.97 16 30 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H -0.01 -0.87 8.14 -2.39 -0.02 -0.88 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.16 2.17 6.28 -2.91 -0.02 2.15 16 36 H 0.17 0.94 6.45 -2.92 -0.02 0.92 16 37 H 0.42 1.24 6.89 -92.70 -0.64 0.60 16 38 H 0.41 2.86 8.93 -92.71 -0.83 2.03 16 Total: -1.00 -77.90 325.45 1.78 -76.12 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -0.37 Total: 6.15 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 3.79 Total: -15.30 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -1.27 Total: -64.99 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -2.41 Total: -48.73 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -77.90 1.78 -76.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594912553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.155 kcal (2) G-P(sol) polarization free energy of solvation -77.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds