Wall clock time and date at job start Fri Apr 10 2020 17:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48502 * 109.47306 * 240.00472 * 3 2 1 5 5 H 1.48503 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47619 * 120.00191 * 3 2 1 7 7 C 1.37872 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99850 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53110 * 300.09724 * 9 7 2 11 11 C 1.53115 * 109.50344 * 60.19434 * 9 7 2 12 12 C 1.53123 * 109.16007 * 177.59399 * 11 9 7 13 13 C 1.53037 * 109.27888 * 302.34506 * 12 11 9 14 14 N 1.46851 * 109.52048 * 59.18204 * 13 12 11 15 15 C 1.46898 * 110.99725 * 174.15831 * 14 13 12 16 16 C 1.50695 * 109.47267 * 294.20432 * 15 14 13 17 17 C 1.34850 * 119.47891 * 90.00064 * 16 15 14 18 18 C 1.41730 * 119.01372 * 180.02562 * 17 16 15 19 19 O 1.22173 * 120.92138 * 179.97438 * 18 17 16 20 20 C 1.42231 * 118.15123 * 0.25134 * 18 17 16 21 21 O 1.36094 * 120.55851 * 179.73251 * 20 18 17 22 22 C 1.35108 * 118.88094 * 359.49519 * 20 18 17 23 23 O 1.33776 * 119.48851 * 270.02427 * 16 15 14 24 24 C 1.46853 * 111.19685 * 298.25243 * 14 13 12 25 25 H 0.96998 * 120.00106 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.52524 * 297.50479 * 11 9 7 27 27 H 1.09002 * 109.52390 * 57.62823 * 11 9 7 28 28 H 1.08997 * 109.50185 * 62.29055 * 12 11 9 29 29 H 1.09004 * 109.50035 * 182.36735 * 12 11 9 30 30 H 1.08995 * 109.46447 * 299.16298 * 13 12 11 31 31 H 1.08996 * 109.46159 * 179.19120 * 13 12 11 32 32 H 1.09002 * 109.47163 * 174.20899 * 15 14 13 33 33 H 1.09001 * 109.47085 * 54.21205 * 15 14 13 34 34 H 1.07993 * 120.49152 * 0.04632 * 17 16 15 35 35 H 0.96693 * 113.99842 * 89.99667 * 21 20 18 36 36 H 1.08004 * 119.57226 * 180.25174 * 22 20 18 37 37 H 1.08998 * 109.46312 * 181.75814 * 24 14 13 38 38 H 1.08993 * 109.46230 * 301.72963 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6231 -2.5574 0.8885 11 6 0.3737 -2.5829 -1.2526 12 6 -0.3418 -3.9365 -1.2752 13 6 0.6982 -5.0585 -1.2390 14 7 1.5114 -4.9348 -0.0224 15 6 2.4285 -6.0739 0.1158 16 6 1.6336 -7.3350 0.3362 17 6 1.2403 -8.0659 -0.7266 18 6 0.4927 -9.2499 -0.5080 19 8 0.1182 -9.9381 -1.4455 20 6 0.1852 -9.6114 0.8328 21 8 -0.5346 -10.7354 1.0987 22 6 0.6240 -8.8228 1.8383 23 8 1.3286 -7.7117 1.5831 24 6 2.2450 -3.6628 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 -0.3643 -1.7809 -1.2346 27 1 0.9970 -2.4844 -2.1414 28 1 -0.9949 -4.0174 -0.4063 29 1 -0.9355 -4.0190 -2.1856 30 1 1.3422 -4.9852 -2.1153 31 1 0.1915 -6.0235 -1.2405 32 1 3.0890 -5.9074 0.9668 33 1 3.0237 -6.1734 -0.7919 34 1 1.4917 -7.7538 -1.7294 35 1 0.0051 -11.5284 1.2207 36 1 0.4005 -9.0890 2.8609 37 1 2.8617 -3.6142 0.8962 38 1 2.8818 -3.5961 -0.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595615437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:45 Heat of formation + Delta-G solvation = -71.991489 kcal Electronic energy + Delta-G solvation = -21813.693557 eV Core-core repulsion = 18429.808857 eV Total energy + Delta-G solvation = -3383.884700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.18601 -39.02921 -38.44696 -37.26060 -34.56478 -32.69752 -31.92064 -30.91404 -29.86631 -26.81393 -25.09443 -24.56419 -23.17557 -21.93592 -21.23246 -19.31051 -18.76296 -18.61845 -17.11737 -16.77086 -16.40650 -16.03084 -15.18442 -14.92088 -14.66229 -14.47403 -14.21464 -14.08322 -13.73828 -13.47385 -13.14863 -12.77581 -12.48534 -12.29066 -11.99045 -11.62843 -11.33213 -10.98030 -10.78886 -10.75898 -10.25368 -9.93701 -9.81331 -9.62098 -9.53348 -9.16987 -8.80169 -8.74812 -8.36505 -7.97128 -6.02701 -4.09781 0.70673 0.83403 2.08033 3.19417 3.28802 3.34331 3.35928 3.65157 4.15129 4.27364 4.35947 4.46046 4.68192 4.94865 5.21017 5.27484 5.29490 5.38519 5.56086 5.62427 5.70124 5.90048 5.95981 6.12515 6.23054 6.38966 6.60860 6.64746 6.80899 6.91584 7.09941 7.18495 7.24041 7.41836 7.55973 7.68925 7.70244 7.99242 8.10031 8.39317 8.93759 9.55033 11.03243 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.038544 B = 0.003643 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.277316 B = 7685.092144 C = 7871.974371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.056 3.944 10 H 0.036 0.964 11 C -0.112 4.112 12 C -0.116 4.116 13 C 0.051 3.949 14 N -0.533 5.533 15 C 0.093 3.907 16 C 0.163 3.837 17 C -0.307 4.307 18 C 0.385 3.615 19 O -0.489 6.489 20 C -0.085 4.085 21 O -0.466 6.466 22 C 0.084 3.916 23 O -0.192 6.192 24 C 0.069 3.931 25 H 0.261 0.739 26 H 0.092 0.908 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.385 0.615 36 H 0.204 0.796 37 H 0.065 0.935 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.130 -15.933 3.392 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.154 4.154 13 C -0.077 4.077 14 N -0.258 5.258 15 C -0.035 4.035 16 C 0.114 3.886 17 C -0.328 4.328 18 C 0.274 3.726 19 O -0.375 6.375 20 C -0.132 4.132 21 O -0.275 6.275 22 C 0.017 3.983 23 O -0.092 6.092 24 C -0.057 4.057 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.176 0.824 35 H 0.240 0.760 36 H 0.221 0.779 37 H 0.083 0.917 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.067 -15.607 3.471 16.280 hybrid contribution 1.227 0.386 -0.731 1.479 sum 4.294 -15.221 2.741 16.051 Atomic orbital electron populations 1.69874 1.05867 1.26578 1.50217 1.24927 0.94828 0.98993 0.94995 0.86674 0.79607 0.83222 0.78561 1.20357 1.21301 1.20278 1.21067 0.92785 0.90534 1.51308 0.92796 1.18675 0.92559 0.90051 0.95029 0.94597 1.21680 1.00118 0.94716 0.98483 1.21666 0.97078 0.96180 1.00510 1.22275 0.96001 0.99688 0.89724 1.62055 1.23431 1.01395 1.38909 1.21188 0.93123 0.86088 1.03092 1.22699 0.91267 0.93920 0.80694 1.22820 1.09484 0.99870 1.00673 1.17936 0.79722 0.85920 0.89005 1.90805 1.48630 1.52962 1.45062 1.20211 1.04627 0.94333 0.94026 1.84977 1.33608 1.16532 1.92354 1.24422 0.89273 0.83881 1.00718 1.83011 1.58709 1.38241 1.29280 1.22403 0.96629 0.87345 0.99314 0.92902 0.88972 0.94985 0.92042 0.93204 0.95185 0.91812 0.87984 0.90793 0.82444 0.75990 0.77941 0.91690 0.95614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 11.36 55.43 0.63 -24.01 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.55 8.56 -34.44 -0.29 -13.85 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.06 1.32 2.26 -91.69 -0.21 1.11 16 10 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.54 5.03 -26.61 -0.13 -2.67 16 12 C -0.12 -2.21 6.09 -26.65 -0.16 -2.38 16 13 C 0.05 0.84 5.12 -3.83 -0.02 0.82 16 14 N -0.53 -8.76 4.65 -236.12 -1.10 -9.86 16 15 C 0.09 1.14 5.31 -4.98 -0.03 1.12 16 16 C 0.16 1.96 5.99 -35.51 -0.21 1.75 16 17 C -0.31 -3.97 7.76 -39.45 -0.31 -4.28 16 18 C 0.39 5.65 6.81 -36.72 -0.25 5.40 16 19 O -0.49 -8.94 17.75 -10.25 -0.18 -9.12 16 20 C -0.08 -0.99 6.73 -39.16 -0.26 -1.26 16 21 O -0.47 -5.06 13.37 -35.05 -0.47 -5.53 16 22 C 0.08 0.76 11.30 29.62 0.33 1.09 16 23 O -0.19 -2.10 9.73 7.86 0.08 -2.02 16 24 C 0.07 1.32 4.68 -3.83 -0.02 1.30 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.09 2.37 6.16 -51.93 -0.32 2.05 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.99 5.74 -51.93 -0.30 0.69 16 32 H 0.10 1.11 7.99 -51.93 -0.41 0.69 16 33 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.16 1.96 7.90 -52.49 -0.41 1.54 16 35 H 0.39 2.20 9.06 45.56 0.41 2.62 16 36 H 0.20 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.06 1.19 8.02 -51.93 -0.42 0.77 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -32.11 314.55 -7.35 -39.46 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.37 Total: 0.97 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.65 Total: -10.23 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: -0.47 Total: -33.88 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.57 Total: -16.67 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.11 -7.35 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.531 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds