Wall clock time and date at job start Fri Apr 10 2020 17:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48502 * 109.47306 * 240.00472 * 3 2 1 5 5 H 1.48503 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47619 * 120.00191 * 3 2 1 7 7 C 1.37872 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99850 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53110 * 300.09724 * 9 7 2 11 11 C 1.53115 * 109.50344 * 60.19434 * 9 7 2 12 12 C 1.53123 * 109.16007 * 177.59399 * 11 9 7 13 13 C 1.53037 * 109.27888 * 302.34506 * 12 11 9 14 14 N 1.46851 * 109.52048 * 59.18204 * 13 12 11 15 15 C 1.46898 * 110.99725 * 174.15831 * 14 13 12 16 16 C 1.50695 * 109.47267 * 294.20432 * 15 14 13 17 17 C 1.34850 * 119.47891 * 90.00064 * 16 15 14 18 18 C 1.41730 * 119.01372 * 180.02562 * 17 16 15 19 19 O 1.22173 * 120.92138 * 179.97438 * 18 17 16 20 20 C 1.42231 * 118.15123 * 0.25134 * 18 17 16 21 21 O 1.36094 * 120.55851 * 179.73251 * 20 18 17 22 22 C 1.35108 * 118.88094 * 359.49519 * 20 18 17 23 23 O 1.33776 * 119.48851 * 270.02427 * 16 15 14 24 24 C 1.46853 * 111.19685 * 298.25243 * 14 13 12 25 25 H 0.96998 * 120.00106 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.52524 * 297.50479 * 11 9 7 27 27 H 1.09002 * 109.52390 * 57.62823 * 11 9 7 28 28 H 1.08997 * 109.50185 * 62.29055 * 12 11 9 29 29 H 1.09004 * 109.50035 * 182.36735 * 12 11 9 30 30 H 1.08995 * 109.46447 * 299.16298 * 13 12 11 31 31 H 1.08996 * 109.46159 * 179.19120 * 13 12 11 32 32 H 1.09002 * 109.47163 * 174.20899 * 15 14 13 33 33 H 1.09001 * 109.47085 * 54.21205 * 15 14 13 34 34 H 1.07993 * 120.49152 * 0.04632 * 17 16 15 35 35 H 0.96693 * 113.99842 * 89.99667 * 21 20 18 36 36 H 1.08004 * 119.57226 * 180.25174 * 22 20 18 37 37 H 1.08998 * 109.46312 * 181.75814 * 24 14 13 38 38 H 1.08993 * 109.46230 * 301.72963 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6231 -2.5574 0.8885 11 6 0.3737 -2.5829 -1.2526 12 6 -0.3418 -3.9365 -1.2752 13 6 0.6982 -5.0585 -1.2390 14 7 1.5114 -4.9348 -0.0224 15 6 2.4285 -6.0739 0.1158 16 6 1.6336 -7.3350 0.3362 17 6 1.2403 -8.0659 -0.7266 18 6 0.4927 -9.2499 -0.5080 19 8 0.1182 -9.9381 -1.4455 20 6 0.1852 -9.6114 0.8328 21 8 -0.5346 -10.7354 1.0987 22 6 0.6240 -8.8228 1.8383 23 8 1.3286 -7.7117 1.5831 24 6 2.2450 -3.6628 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 -0.3643 -1.7809 -1.2346 27 1 0.9970 -2.4844 -2.1414 28 1 -0.9949 -4.0174 -0.4063 29 1 -0.9355 -4.0190 -2.1856 30 1 1.3422 -4.9852 -2.1153 31 1 0.1915 -6.0235 -1.2405 32 1 3.0890 -5.9074 0.9668 33 1 3.0237 -6.1734 -0.7919 34 1 1.4917 -7.7538 -1.7294 35 1 0.0051 -11.5284 1.2207 36 1 0.4005 -9.0890 2.8609 37 1 2.8617 -3.6142 0.8962 38 1 2.8818 -3.5961 -0.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595615437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:45 Heat of formation + Delta-G solvation = -95.094206 kcal Electronic energy + Delta-G solvation = -21814.695366 eV Core-core repulsion = 18429.808857 eV Total energy + Delta-G solvation = -3384.886509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.11475 -40.07989 -39.79836 -38.18157 -36.07416 -34.25700 -33.15355 -32.04603 -31.53735 -27.95586 -26.92621 -25.51538 -24.44131 -23.40893 -22.64051 -20.43440 -20.09455 -19.57155 -18.52236 -17.85919 -17.71687 -17.06261 -16.68269 -16.22411 -15.90476 -15.70573 -15.38663 -15.28423 -14.94027 -14.80647 -14.47242 -14.26952 -13.92886 -13.73753 -13.41846 -12.91398 -12.79105 -12.60436 -12.54806 -12.25177 -11.88530 -11.71805 -11.39121 -10.96029 -10.73882 -10.63890 -10.58733 -10.34997 -9.72720 -9.27754 -8.05213 -6.19153 -0.22680 -0.06904 1.22159 1.45529 1.45796 1.53267 2.20656 2.45675 2.80793 3.03219 3.22783 3.33160 3.51754 3.84975 4.01401 4.11671 4.22652 4.34956 4.39442 4.47620 4.56115 4.61995 4.73035 4.75183 4.88669 4.97279 4.98270 5.06219 5.17578 5.36552 5.52182 5.66408 5.89937 6.00871 6.10210 6.16949 6.20633 6.44500 6.45716 6.79427 6.94342 7.49264 8.99233 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.038544 B = 0.003643 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.277316 B = 7685.092144 C = 7871.974371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.051 3.949 10 H -0.002 1.002 11 C -0.105 4.105 12 C -0.112 4.112 13 C 0.057 3.943 14 N -0.544 5.544 15 C 0.093 3.907 16 C 0.175 3.825 17 C -0.314 4.314 18 C 0.370 3.630 19 O -0.546 6.546 20 C -0.108 4.108 21 O -0.479 6.479 22 C 0.117 3.883 23 O -0.189 6.189 24 C 0.084 3.916 25 H 0.259 0.741 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.159 0.841 35 H 0.405 0.595 36 H 0.253 0.747 37 H 0.074 0.926 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 -16.714 4.525 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.076 0.924 9 C 0.032 3.968 10 H 0.016 0.984 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.070 4.070 14 N -0.270 5.270 15 C -0.034 4.034 16 C 0.126 3.874 17 C -0.335 4.335 18 C 0.264 3.736 19 O -0.436 6.436 20 C -0.155 4.155 21 O -0.290 6.290 22 C 0.051 3.949 23 O -0.089 6.089 24 C -0.043 4.043 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.177 0.823 35 H 0.262 0.738 36 H 0.268 0.732 37 H 0.092 0.908 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.662 -16.400 4.630 17.667 hybrid contribution 0.738 0.612 -0.989 1.378 sum 5.401 -15.788 3.641 17.079 Atomic orbital electron populations 1.70035 1.07267 1.27040 1.51304 1.25712 0.95563 1.02344 0.94924 0.85702 0.78369 0.79239 0.78861 1.19693 1.21496 1.19469 1.21506 0.93218 0.91894 1.50579 0.92390 1.18604 0.93081 0.91494 0.93599 0.98380 1.21481 0.99219 0.95746 0.97847 1.21572 0.97567 0.95166 1.00636 1.22181 0.95566 0.98911 0.90357 1.61869 1.24432 1.01759 1.38917 1.21300 0.92633 0.84298 1.05159 1.22575 0.90554 0.93508 0.80798 1.22797 1.09721 0.99763 1.01222 1.18504 0.79185 0.85939 0.89992 1.90776 1.51450 1.54752 1.46668 1.20064 1.06463 0.95718 0.93286 1.84934 1.34626 1.17287 1.92133 1.25125 0.86179 0.81643 1.01960 1.83056 1.58430 1.38728 1.28664 1.22043 0.95263 0.87023 0.99964 0.93218 0.92657 0.95485 0.93438 0.91753 0.94166 0.90437 0.85889 0.88623 0.82312 0.73751 0.73157 0.90768 0.95174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.33 11.36 21.45 0.24 -52.09 16 2 C 0.01 0.72 5.30 84.65 0.45 1.17 16 3 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.53 -28.00 8.56 25.60 0.22 -27.78 16 8 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.05 2.43 2.26 -11.49 -0.03 2.41 16 10 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 11 C -0.10 -4.83 5.03 30.67 0.15 -4.68 16 12 C -0.11 -4.21 6.09 30.65 0.19 -4.02 16 13 C 0.06 1.79 5.12 86.32 0.44 2.23 16 14 N -0.54 -16.66 4.65 -900.93 -4.19 -20.85 16 15 C 0.09 1.96 5.31 85.56 0.45 2.41 16 16 C 0.18 3.67 5.99 24.91 0.15 3.82 16 17 C -0.31 -7.58 7.76 22.35 0.17 -7.41 16 18 C 0.37 10.63 6.81 24.13 0.16 10.79 16 19 O -0.55 -20.41 17.75 8.47 0.15 -20.26 16 20 C -0.11 -2.32 6.73 22.54 0.15 -2.17 16 21 O -0.48 -9.59 13.37 -80.27 -1.07 -10.66 16 22 C 0.12 1.67 11.30 67.10 0.76 2.43 16 23 O -0.19 -3.41 9.73 5.21 0.05 -3.36 16 24 C 0.08 3.05 4.68 86.33 0.40 3.45 16 25 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 26 H 0.05 2.95 6.16 -2.39 -0.01 2.94 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 2.25 5.74 -2.39 -0.01 2.23 16 32 H 0.12 2.14 7.99 -2.39 -0.02 2.12 16 33 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 34 H 0.16 3.72 7.90 -2.91 -0.02 3.69 16 35 H 0.41 3.96 9.06 -74.06 -0.67 3.29 16 36 H 0.25 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.07 2.55 8.02 -2.39 -0.02 2.53 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -72.28 314.55 1.30 -70.98 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.41 Total: 9.19 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.68 Total: -17.34 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -3.94 Total: -72.94 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.87 Total: -34.28 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -72.28 1.30 -70.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.111 kcal (2) G-P(sol) polarization free energy of solvation -72.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds