Wall clock time and date at job start Fri Apr 10 2020 17:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99883 * 2 1 4 4 H 1.48498 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47509 * 300.00253 * 3 2 1 6 6 H 1.48500 * 109.46661 * 60.00577 * 3 2 1 7 7 C 1.37877 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00069 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47489 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00138 * 89.99888 * 10 9 7 12 12 C 1.50702 * 109.47046 * 265.22218 * 11 10 9 13 13 C 1.34512 * 125.79051 * 90.00270 * 12 11 10 14 14 C 1.41383 * 106.84035 * 179.97438 * 13 12 11 15 15 C 1.34517 * 106.84131 * 359.97438 * 14 13 12 16 16 O 1.34303 * 125.78497 * 269.68728 * 12 11 10 17 17 C 1.34772 * 120.00320 * 270.00631 * 10 9 7 18 18 O 1.21284 * 119.99790 * 5.52907 * 17 10 9 19 19 C 1.50700 * 120.00316 * 185.53850 * 17 10 9 20 20 H 1.09001 * 109.46962 * 311.39061 * 19 17 10 21 21 O 1.42901 * 109.47215 * 191.39007 * 19 17 10 22 22 C 1.53006 * 109.47182 * 71.38845 * 19 17 10 23 23 C 1.52992 * 117.49780 * 242.25848 * 22 19 17 24 24 C 1.53003 * 117.49714 * 173.59765 * 22 19 17 25 25 H 0.96999 * 119.99775 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46748 * 60.00098 * 9 7 2 27 27 H 1.09003 * 109.46882 * 300.00334 * 9 7 2 28 28 H 1.09007 * 109.46354 * 25.21580 * 11 10 9 29 29 H 1.08989 * 109.47251 * 145.21503 * 11 10 9 30 30 H 1.07997 * 126.58380 * 0.02562 * 13 12 11 31 31 H 1.08001 * 126.57981 * 179.97438 * 14 13 12 32 32 H 1.08001 * 125.79262 * 180.02562 * 15 14 13 33 33 H 0.96699 * 113.99821 * 299.99550 * 21 19 17 34 34 H 1.08995 * 115.54665 * 27.92971 * 22 19 17 35 35 H 1.09002 * 117.50452 * 0.02562 * 23 22 19 36 36 H 1.09003 * 117.49848 * 145.01787 * 23 22 19 37 37 H 1.08989 * 117.49924 * 214.97738 * 24 22 19 38 38 H 1.08997 * 117.49710 * 0.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6802 -4.1700 1.2664 12 6 3.9865 -3.5188 1.6415 13 6 4.1260 -2.4045 2.3817 14 6 5.5134 -2.1530 2.4860 15 6 6.1387 -3.1291 1.8036 16 8 5.2091 -3.9562 1.2982 17 6 2.6403 -4.1242 -1.1695 18 8 2.3252 -3.6002 -2.2169 19 6 3.5204 -5.3475 -1.1737 20 1 4.3324 -5.2134 -0.4591 21 8 4.0636 -5.5389 -2.4815 22 6 2.6925 -6.5729 -0.7810 23 6 3.0909 -7.3145 0.4965 24 6 3.3700 -7.9417 -0.8717 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 1.9427 -3.9808 2.0465 29 1 2.8275 -5.2444 1.1584 30 1 3.3309 -1.8153 2.8143 31 1 5.9813 -1.3342 3.0124 32 1 7.2073 -3.2324 1.6855 33 1 3.3964 -5.6652 -3.1700 34 1 1.6309 -6.5197 -1.0219 35 1 3.9424 -6.9294 1.0575 36 1 2.2912 -7.7498 1.0959 37 1 2.7539 -8.7892 -1.1718 38 1 4.4055 -7.9693 -1.2108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597025188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:46 Heat of formation + Delta-G solvation = -60.822452 kcal Electronic energy + Delta-G solvation = -22797.080213 eV Core-core repulsion = 19413.679839 eV Total energy + Delta-G solvation = -3383.400374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.41650 -41.23967 -38.59525 -37.26351 -36.08709 -34.81976 -33.82055 -31.55017 -30.29122 -28.28997 -26.70195 -24.79194 -23.30812 -22.60626 -22.23751 -21.64992 -20.54157 -18.91890 -18.68525 -18.02082 -17.82805 -17.18891 -16.74172 -16.39865 -16.25962 -15.75937 -15.19015 -14.96566 -14.66713 -14.22333 -14.12056 -13.96953 -13.70182 -13.54254 -13.32132 -13.03218 -12.88651 -12.71795 -12.61916 -12.30443 -12.26587 -11.78859 -11.74048 -11.42612 -11.12489 -10.74495 -10.64176 -10.40932 -9.72233 -9.30396 -8.23285 -6.33434 0.79191 1.31171 1.34162 1.45176 1.55497 1.77273 2.16429 2.26161 2.41114 2.70302 3.07584 3.37115 3.49680 3.74331 3.79468 3.99387 4.00235 4.12408 4.22839 4.29129 4.43923 4.53020 4.59443 4.82293 4.94087 4.98398 5.02361 5.12092 5.15329 5.18860 5.28210 5.31168 5.51430 5.66994 5.77516 6.06459 6.25829 6.43632 6.63183 6.74094 7.19544 7.37591 8.84570 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.007115 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.317412 B = 3934.247080 C = 4868.743530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.045 0.955 9 C 0.259 3.741 10 N -0.589 5.589 11 C 0.182 3.818 12 C -0.049 4.049 13 C -0.192 4.192 14 C -0.234 4.234 15 C -0.037 4.037 16 O -0.186 6.186 17 C 0.476 3.524 18 O -0.584 6.584 19 C 0.132 3.868 20 H 0.125 0.875 21 O -0.548 6.548 22 C -0.212 4.212 23 C -0.162 4.162 24 C -0.141 4.141 25 H 0.266 0.734 26 H 0.002 0.998 27 H 0.035 0.965 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.241 0.759 33 H 0.389 0.611 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.445 -14.996 6.500 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.063 0.937 9 C 0.138 3.862 10 N -0.320 5.320 11 C 0.059 3.941 12 C -0.099 4.099 13 C -0.213 4.213 14 C -0.253 4.253 15 C -0.104 4.104 16 O -0.083 6.083 17 C 0.264 3.736 18 O -0.464 6.464 19 C 0.070 3.930 20 H 0.142 0.858 21 O -0.354 6.354 22 C -0.231 4.231 23 C -0.199 4.199 24 C -0.178 4.178 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.053 0.947 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.155 0.845 31 H 0.180 0.820 32 H 0.257 0.743 33 H 0.239 0.761 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.711 -14.810 6.098 18.730 hybrid contribution -0.532 1.881 -0.391 1.993 sum 9.179 -12.929 5.706 16.852 Atomic orbital electron populations 1.70024 1.07148 1.27830 1.51676 1.25666 0.95647 1.02353 0.94927 0.85564 0.78696 0.79767 0.78021 1.19948 1.20925 1.19202 1.21573 0.92811 0.91712 1.49989 0.93653 1.18901 0.87529 0.83506 0.96276 1.48250 1.43975 1.34303 1.05438 1.20387 0.88271 0.98740 0.86659 1.22979 0.85724 0.99094 1.02130 1.21793 0.97768 0.97895 1.03812 1.22134 0.93476 1.03012 1.06663 1.24743 0.95587 0.91334 0.98785 1.83935 1.14999 1.47926 1.61414 1.22185 0.81047 0.86792 0.83558 1.90646 1.59227 1.63453 1.33115 1.21431 0.95231 0.89514 0.86837 0.85789 1.86496 1.37596 1.94288 1.17043 1.22709 0.99830 0.93104 1.07424 1.23250 1.04262 1.02010 0.90334 1.22982 1.02036 0.93375 0.99428 0.92510 0.98033 0.94736 0.86162 0.85786 0.84503 0.82048 0.74334 0.76143 0.87749 0.87601 0.86019 0.86625 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 2 C 0.01 0.74 5.46 84.65 0.46 1.21 16 3 Si 0.95 46.02 29.54 68.60 2.03 48.05 16 4 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.52 -30.09 9.39 25.60 0.24 -29.85 16 8 H 0.05 2.71 7.67 -2.91 -0.02 2.68 16 9 C 0.26 13.68 5.16 85.63 0.44 14.13 16 10 N -0.59 -24.98 2.45 -830.52 -2.04 -27.01 16 11 C 0.18 5.79 5.62 85.63 0.48 6.27 16 12 C -0.05 -1.64 6.66 24.83 0.17 -1.47 16 13 C -0.19 -6.76 10.67 22.19 0.24 -6.52 16 14 C -0.23 -6.90 10.91 22.19 0.24 -6.66 16 15 C -0.04 -0.97 12.09 66.97 0.81 -0.16 16 16 O -0.19 -5.68 9.20 -2.54 -0.02 -5.70 16 17 C 0.48 20.55 6.89 87.66 0.60 21.16 16 18 O -0.58 -31.14 15.94 15.75 0.25 -30.89 16 19 C 0.13 4.21 2.82 29.85 0.08 4.30 16 20 H 0.12 3.86 5.59 -2.39 -0.01 3.85 16 21 O -0.55 -17.90 12.84 -130.19 -1.67 -19.58 16 22 C -0.21 -4.94 4.68 -10.79 -0.05 -4.99 16 23 C -0.16 -2.68 8.24 30.62 0.25 -2.43 16 24 C -0.14 -2.40 10.04 30.62 0.31 -2.09 16 25 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 26 H 0.00 0.10 7.50 -2.39 -0.02 0.08 16 27 H 0.03 1.80 7.86 -2.39 -0.02 1.78 16 28 H 0.12 3.50 7.84 -2.38 -0.02 3.48 16 29 H 0.12 3.06 3.46 -2.39 -0.01 3.05 16 30 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 31 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.24 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.39 11.24 8.72 -74.06 -0.65 10.59 16 34 H 0.10 2.61 8.06 -2.39 -0.02 2.59 16 35 H 0.11 1.70 7.65 -2.39 -0.02 1.68 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -76.33 324.47 3.55 -72.78 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.44 Total: 24.78 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 4.28 Total: -7.11 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -1.75 Total: -82.34 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -1.44 Total: -56.16 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -76.33 3.55 -72.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597025188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.958 kcal (2) G-P(sol) polarization free energy of solvation -76.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds