Wall clock time and date at job start Fri Apr 10 2020 17:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00082 * 2 1 4 4 H 1.48500 * 109.47439 * 269.99919 * 3 2 1 5 5 H 1.48504 * 109.47008 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47181 * 149.99332 * 3 2 1 7 7 C 1.37883 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00385 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00444 * 270.27463 * 10 9 7 12 12 C 1.50702 * 109.47427 * 269.72511 * 11 10 9 13 13 C 1.34517 * 125.78665 * 89.71667 * 12 11 10 14 14 C 1.41379 * 106.83802 * 179.89310 * 13 12 11 15 15 C 1.34519 * 106.84253 * 0.36746 * 14 13 12 16 16 O 1.34297 * 125.78865 * 270.02419 * 12 11 10 17 17 C 1.34784 * 119.99635 * 90.00174 * 10 9 7 18 18 O 1.21507 * 119.99849 * 0.02562 * 17 10 9 19 19 O 1.34633 * 119.99596 * 179.97438 * 17 10 9 20 20 C 1.45208 * 116.99886 * 179.97438 * 19 17 10 21 21 C 1.53782 * 113.61208 * 249.14085 * 20 19 17 22 22 C 1.53956 * 87.01599 * 220.04611 * 21 20 19 23 23 C 1.53777 * 87.11292 * 25.36407 * 22 21 20 24 24 H 0.96998 * 120.00151 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47073 * 59.99595 * 9 7 2 26 26 H 1.09004 * 109.47082 * 300.00219 * 9 7 2 27 27 H 1.09002 * 109.47192 * 29.72648 * 11 10 9 28 28 H 1.08996 * 109.47342 * 149.72358 * 11 10 9 29 29 H 1.07999 * 126.58053 * 0.02562 * 13 12 11 30 30 H 1.08004 * 126.58139 * 180.16638 * 14 13 12 31 31 H 1.07995 * 125.78919 * 179.75792 * 15 14 13 32 32 H 1.08998 * 112.84708 * 20.33382 * 20 19 17 33 33 H 1.08996 * 113.62023 * 334.56191 * 21 20 19 34 34 H 1.09002 * 113.61539 * 105.47120 * 21 20 19 35 35 H 1.09010 * 113.53590 * 270.81314 * 22 21 20 36 36 H 1.08997 * 113.66704 * 139.93755 * 22 21 20 37 37 H 1.09003 * 113.61678 * 220.09323 * 23 22 21 38 38 H 1.08996 * 113.69213 * 89.19310 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6836 -4.1655 -1.2681 12 6 1.7724 -5.2829 -1.7065 13 6 0.6777 -5.1488 -2.4767 14 6 0.1310 -6.4424 -2.6401 15 6 0.9197 -7.2884 -1.9533 16 8 1.9122 -6.5805 -1.3899 17 6 2.6408 -4.1249 1.1678 18 8 2.2456 -3.6634 2.2201 19 8 3.5153 -5.1485 1.1678 20 6 3.9441 -5.6492 2.4617 21 6 5.4174 -5.3464 2.7819 22 6 5.4940 -6.7616 3.3831 23 6 4.3319 -7.1373 2.4487 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.6896 -3.3827 -2.0265 28 1 3.6944 -4.5515 -1.1365 29 1 0.2918 -4.2298 -2.8924 30 1 -0.7524 -6.7012 -3.2050 31 1 0.7785 -8.3558 -1.8690 32 1 3.2588 -5.3836 3.2666 33 1 6.0386 -5.2142 1.8961 34 1 5.5503 -4.5514 3.5157 35 1 5.2335 -6.7998 4.4410 36 1 6.4233 -7.2838 3.1560 37 1 3.5897 -7.7860 2.9138 38 1 4.6543 -7.4958 1.4712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829787050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:12 Heat of formation + Delta-G solvation = -40.061527 kcal Electronic energy + Delta-G solvation = -22125.719506 eV Core-core repulsion = 18743.219393 eV Total energy + Delta-G solvation = -3382.500113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.22334 -39.97496 -38.14230 -35.60032 -34.84607 -32.77782 -32.55885 -30.13128 -27.57606 -25.70366 -25.63805 -24.86548 -22.97328 -21.39347 -20.52826 -19.76642 -19.56450 -17.74737 -17.06630 -16.52511 -16.28493 -15.67093 -15.45608 -15.09833 -14.91014 -14.28640 -14.12669 -13.47593 -12.90829 -12.52449 -12.49859 -12.46766 -12.34598 -12.18165 -11.94278 -11.51369 -11.45218 -11.22555 -10.99032 -10.86100 -10.62624 -10.40458 -10.21726 -9.83975 -9.76173 -9.60902 -9.58177 -8.47210 -8.25533 -7.89954 -6.08161 -4.13351 1.96285 2.80200 3.08385 3.24447 3.29214 3.36075 3.41008 3.68689 4.39393 4.50850 4.57586 4.69018 4.87455 4.96665 5.02876 5.26488 5.29134 5.32388 5.52458 5.62810 5.63994 5.73724 5.80740 5.95702 5.96188 6.07507 6.08851 6.19852 6.24767 6.37082 6.76479 6.80078 7.10726 7.36219 7.41920 7.49573 7.87740 8.15726 8.26327 8.86567 9.13838 9.52202 11.00002 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.006719 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.508649 B = 4166.131452 C = 6074.770839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.260 3.740 10 N -0.574 5.574 11 C 0.196 3.804 12 C -0.021 4.021 13 C -0.198 4.198 14 C -0.215 4.215 15 C -0.052 4.052 16 O -0.169 6.169 17 C 0.642 3.358 18 O -0.566 6.566 19 O -0.362 6.362 20 C 0.080 3.920 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.132 4.132 24 H 0.264 0.736 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.144 0.856 31 H 0.196 0.804 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -15.037 -1.805 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.078 0.922 9 C 0.142 3.858 10 N -0.312 5.312 11 C 0.072 3.928 12 C -0.073 4.073 13 C -0.218 4.218 14 C -0.234 4.234 15 C -0.121 4.121 16 O -0.065 6.065 17 C 0.395 3.605 18 O -0.455 6.455 19 O -0.277 6.277 20 C 0.023 3.977 21 C -0.189 4.189 22 C -0.177 4.177 23 C -0.170 4.170 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.168 0.832 30 H 0.162 0.838 31 H 0.213 0.787 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.739 -14.887 -1.233 16.388 hybrid contribution -0.004 0.959 -0.117 0.966 sum 6.735 -13.928 -1.350 15.530 Atomic orbital electron populations 1.69932 1.05997 1.27166 1.50069 1.24920 0.94883 0.99214 0.94909 0.86467 0.79846 0.82897 0.78052 1.20544 1.21077 1.19859 1.21444 0.93529 0.90457 1.51581 0.92170 1.19408 0.86542 0.80764 0.99058 1.47344 1.47222 1.35376 1.01266 1.19836 0.94604 0.90393 0.88011 1.23268 1.00442 0.82969 1.00597 1.21707 0.97123 0.98852 1.04127 1.21807 1.02849 0.93247 1.05534 1.23939 0.90278 0.97776 1.00068 1.84058 1.44531 1.18598 1.59290 1.18208 0.78345 0.78806 0.85093 1.90936 1.61182 1.62950 1.30389 1.86347 1.58677 1.48296 1.34398 1.24293 0.95157 0.93874 0.84329 1.23458 0.96478 0.97473 1.01489 1.22659 0.98910 0.96903 0.99179 1.23217 0.98046 0.94998 1.00731 0.92607 0.94100 0.93530 0.86569 0.89279 0.83233 0.83844 0.78684 0.87332 0.89153 0.90747 0.89838 0.90562 0.90835 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.26 6.78 5.16 -5.20 -0.03 6.75 16 10 N -0.57 -12.80 2.44 -182.26 -0.44 -13.24 16 11 C 0.20 3.49 5.94 -5.20 -0.03 3.46 16 12 C -0.02 -0.36 6.90 -35.62 -0.25 -0.61 16 13 C -0.20 -3.24 10.81 -39.70 -0.43 -3.67 16 14 C -0.22 -3.03 10.91 -39.70 -0.43 -3.46 16 15 C -0.05 -0.70 12.09 29.42 0.36 -0.35 16 16 O -0.17 -2.79 10.65 5.72 0.06 -2.73 16 17 C 0.64 14.67 8.39 54.06 0.45 15.13 16 18 O -0.57 -14.87 15.15 -19.28 -0.29 -15.16 16 19 O -0.36 -6.87 9.07 -40.30 -0.37 -7.24 16 20 C 0.08 1.25 4.23 -25.92 -0.11 1.14 16 21 C -0.15 -1.95 7.94 -25.83 -0.20 -2.15 16 22 C -0.14 -1.39 8.09 -25.83 -0.21 -1.60 16 23 C -0.13 -1.55 7.92 -25.92 -0.21 -1.75 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 26 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 27 H 0.12 1.94 8.07 -51.93 -0.42 1.52 16 28 H 0.09 1.44 7.38 -51.93 -0.38 1.06 16 29 H 0.15 2.38 8.06 -52.49 -0.42 1.95 16 30 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 31 H 0.20 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.11 1.85 7.11 -51.93 -0.37 1.48 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -33.06 331.87 -7.16 -40.21 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.33 Total: 2.59 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.51 Total: -0.60 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.29 Total: -38.63 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.60 Total: -25.13 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.06 -7.16 -40.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829787050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.152 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds