Wall clock time and date at job start Fri Apr 10 2020 17:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47422 * 2 1 4 4 C 1.52997 * 109.47163 * 239.99309 * 2 1 3 5 5 C 1.50701 * 109.46890 * 60.00329 * 4 2 1 6 6 H 1.08005 * 120.00081 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00129 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99888 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00066 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47117 * 119.99782 * 9 7 5 12 12 H 1.48498 * 109.47276 * 240.00018 * 9 7 5 13 13 C 1.53003 * 109.47121 * 119.99624 * 2 1 3 14 14 O 1.45200 * 109.47134 * 299.99922 * 13 2 1 15 15 C 1.34696 * 116.99856 * 180.02562 * 14 13 2 16 16 O 1.21450 * 120.00187 * 359.97438 * 15 14 13 17 17 C 1.47875 * 119.99581 * 180.02562 * 15 14 13 18 18 C 1.39967 * 120.91327 * 179.97438 * 17 15 14 19 19 C 1.38009 * 119.00077 * 180.02562 * 18 17 15 20 20 N 1.31987 * 120.89340 * 0.02634 * 19 18 17 21 21 O 1.41605 * 118.97844 * 179.97438 * 20 19 18 22 22 C 1.31989 * 122.04293 * 0.23233 * 20 19 18 23 23 C 1.38008 * 120.89320 * 359.48972 * 22 20 19 24 24 H 1.09003 * 109.46635 * 300.00246 * 1 2 3 25 25 H 1.08993 * 109.46823 * 59.99935 * 1 2 3 26 26 H 1.08996 * 109.46948 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47489 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46566 * 299.99862 * 3 2 1 29 29 H 1.08993 * 109.47225 * 59.99453 * 3 2 1 30 30 H 1.08998 * 109.47470 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47686 * 300.00317 * 4 2 1 32 32 H 0.97009 * 120.00202 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47174 * 179.97438 * 13 2 1 34 34 H 1.09002 * 109.46693 * 59.99949 * 13 2 1 35 35 H 1.07999 * 120.49864 * 0.02562 * 18 17 15 36 36 H 1.07997 * 119.54868 * 179.97438 * 19 18 17 37 37 H 1.08004 * 119.55784 * 179.74158 * 22 20 19 38 38 H 1.07998 * 120.50296 * 180.25766 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8704 -0.4825 -3.7319 8 7 2.6264 -1.5517 -3.8525 9 14 1.2471 0.3976 -5.2572 10 1 0.4228 1.5648 -4.8530 11 1 2.4019 0.8641 -6.0661 12 1 0.4219 -0.5360 -6.0649 13 6 2.0400 -0.7212 1.2493 14 8 1.5560 -0.0366 2.4348 15 6 1.9184 -0.5481 3.6270 16 8 2.6190 -1.5390 3.6751 17 6 1.4622 0.0963 4.8774 18 6 1.8268 -0.4193 6.1265 19 6 1.3783 0.2133 7.2682 20 7 0.6163 1.2883 7.1925 21 8 0.1786 1.9047 8.3898 22 6 0.2455 1.8037 6.0353 23 6 0.6534 1.2381 4.8444 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7210 -1.2494 31 1 1.6767 -1.7490 -1.2491 32 1 2.8607 -1.8833 -4.7335 33 1 3.1301 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 2.4497 -1.2988 6.1959 36 1 1.6540 -0.1772 8.2366 37 1 -0.3823 2.6824 6.0202 38 1 0.3497 1.6675 3.9012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842785481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:10 Heat of formation + Delta-G solvation = -40.431370 kcal Electronic energy + Delta-G solvation = -21162.903721 eV Core-core repulsion = 17780.387571 eV Total energy + Delta-G solvation = -3382.516150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82507 -40.33407 -37.50013 -35.67724 -35.01146 -32.48661 -32.37197 -30.49770 -27.59034 -26.82193 -26.55744 -25.39069 -24.79067 -23.12133 -21.49924 -18.98091 -18.40954 -17.97347 -17.18460 -16.61974 -16.54556 -16.27807 -15.96774 -15.70032 -14.69004 -14.60737 -13.97915 -13.95555 -13.33979 -13.02353 -12.74044 -12.64694 -12.44216 -12.15734 -11.59278 -11.40631 -11.07896 -10.98414 -10.88370 -10.74201 -10.53217 -10.49683 -10.30884 -10.24901 -9.90005 -9.75131 -9.35994 -9.05192 -9.01938 -8.45785 -6.09751 -4.11342 -0.37037 0.10497 1.97606 2.09414 2.31911 2.85153 3.24656 3.33209 3.35506 3.82854 3.97189 4.04440 4.17418 4.36548 4.41077 4.91609 4.95387 5.22217 5.25363 5.25488 5.27918 5.33090 5.63560 5.82803 6.01828 6.19345 6.25645 6.33474 6.34557 6.57041 6.58578 6.60586 6.95920 6.98119 7.00214 7.47906 7.49428 7.60043 7.88234 8.28901 8.93113 9.52524 11.01836 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.041489 B = 0.003146 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.722402 B = 8897.249644 C = 9375.602628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.127 4.127 4 C 0.034 3.966 5 C -0.511 4.511 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.080 3.920 14 O -0.341 6.341 15 C 0.503 3.497 16 O -0.493 6.493 17 C -0.078 4.078 18 C -0.062 4.062 19 C 0.065 3.935 20 N -0.104 5.104 21 O -0.537 6.537 22 C 0.065 3.935 23 C -0.064 4.064 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.191 0.809 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.242 3.158 15.497 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.059 4.059 3 C -0.184 4.184 4 C -0.003 4.003 5 C -0.549 4.549 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.007 3.993 14 O -0.256 6.256 15 C 0.346 3.654 16 O -0.381 6.381 17 C -0.087 4.087 18 C -0.081 4.081 19 C -0.080 4.080 20 N 0.219 4.781 21 O -0.594 6.594 22 C -0.080 4.080 23 C -0.083 4.083 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.195 0.805 36 H 0.208 0.792 37 H 0.208 0.792 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.075 2.925 15.666 16.071 hybrid contribution -0.169 0.241 -0.881 0.928 sum -2.243 3.166 14.785 15.286 Atomic orbital electron populations 1.21731 0.94677 1.01071 1.00934 1.20855 0.96255 0.96289 0.92488 1.21731 1.00150 0.95601 1.00935 1.19137 0.96451 0.95332 0.89338 1.21165 1.31346 1.12201 0.90218 0.91982 1.25012 0.95228 0.95056 0.99182 1.69966 1.36884 1.23020 1.23513 0.86558 0.78652 0.79696 0.83237 1.19689 1.21071 1.21067 1.23692 0.99286 0.96122 0.80197 1.86514 1.69056 1.55624 1.14450 1.20651 0.78099 0.82139 0.84519 1.90880 1.34587 1.24528 1.88095 1.19837 0.99685 0.96718 0.92415 1.21993 0.97005 0.99991 0.89079 1.22638 0.94631 0.88815 1.01904 1.43404 1.14669 1.10236 1.09802 1.97686 1.79823 1.71482 1.10439 1.22731 1.00593 1.01346 0.83353 1.22281 0.93257 0.93197 0.99560 0.94261 0.91377 0.93649 0.93647 0.91381 0.94254 0.96270 0.96269 0.92987 0.91089 0.91094 0.80504 0.79186 0.79176 0.80129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.08 37.16 0.30 -1.82 16 2 C -0.06 -1.05 0.61 -154.51 -0.09 -1.14 16 3 C -0.13 -2.12 8.08 37.16 0.30 -1.82 16 4 C 0.03 0.80 4.04 -27.88 -0.11 0.69 16 5 C -0.51 -13.01 7.65 -34.44 -0.26 -13.27 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.23 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 9 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.08 1.25 4.33 37.16 0.16 1.42 16 14 O -0.34 -4.43 8.23 -40.48 -0.33 -4.77 16 15 C 0.50 5.96 7.92 34.68 0.27 6.23 16 16 O -0.49 -7.10 16.23 -19.23 -0.31 -7.41 16 17 C -0.08 -0.65 5.91 -104.66 -0.62 -1.27 16 18 C -0.06 -0.42 9.68 -39.02 -0.38 -0.80 16 19 C 0.07 0.50 10.67 -17.57 -0.19 0.31 16 20 N -0.10 -1.14 3.58 -13.30 -0.05 -1.19 16 21 O -0.54 -9.29 20.04 -11.47 -0.23 -9.52 16 22 C 0.06 0.51 10.67 -17.57 -0.19 0.32 16 23 C -0.06 -0.43 9.70 -39.02 -0.38 -0.81 16 24 H 0.04 0.55 7.68 -51.93 -0.40 0.15 16 25 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 29 H 0.04 0.55 7.68 -51.93 -0.40 0.15 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.18 0.90 7.74 -52.49 -0.41 0.50 16 36 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.19 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.18 0.90 7.71 -52.49 -0.40 0.50 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -34.66 328.02 -6.66 -41.32 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -5.11 Total: -3.54 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.28 Total: -10.55 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.69 Total: -25.97 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.88 Total: -21.70 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.66 -6.66 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842785481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.885 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds