Wall clock time and date at job start Fri Apr 10 2020 17:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47422 * 2 1 4 4 C 1.52997 * 109.47163 * 239.99309 * 2 1 3 5 5 C 1.50701 * 109.46890 * 60.00329 * 4 2 1 6 6 H 1.08005 * 120.00081 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00129 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99888 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00066 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47117 * 119.99782 * 9 7 5 12 12 H 1.48498 * 109.47276 * 240.00018 * 9 7 5 13 13 C 1.53003 * 109.47121 * 119.99624 * 2 1 3 14 14 O 1.45200 * 109.47134 * 299.99922 * 13 2 1 15 15 C 1.34696 * 116.99856 * 180.02562 * 14 13 2 16 16 O 1.21450 * 120.00187 * 359.97438 * 15 14 13 17 17 C 1.47875 * 119.99581 * 180.02562 * 15 14 13 18 18 C 1.39967 * 120.91327 * 179.97438 * 17 15 14 19 19 C 1.38009 * 119.00077 * 180.02562 * 18 17 15 20 20 N 1.31987 * 120.89340 * 0.02634 * 19 18 17 21 21 O 1.41605 * 118.97844 * 179.97438 * 20 19 18 22 22 C 1.31989 * 122.04293 * 0.23233 * 20 19 18 23 23 C 1.38008 * 120.89320 * 359.48972 * 22 20 19 24 24 H 1.09003 * 109.46635 * 300.00246 * 1 2 3 25 25 H 1.08993 * 109.46823 * 59.99935 * 1 2 3 26 26 H 1.08996 * 109.46948 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47489 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46566 * 299.99862 * 3 2 1 29 29 H 1.08993 * 109.47225 * 59.99453 * 3 2 1 30 30 H 1.08998 * 109.47470 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47686 * 300.00317 * 4 2 1 32 32 H 0.97009 * 120.00202 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47174 * 179.97438 * 13 2 1 34 34 H 1.09002 * 109.46693 * 59.99949 * 13 2 1 35 35 H 1.07999 * 120.49864 * 0.02562 * 18 17 15 36 36 H 1.07997 * 119.54868 * 179.97438 * 19 18 17 37 37 H 1.08004 * 119.55784 * 179.74158 * 22 20 19 38 38 H 1.07998 * 120.50296 * 180.25766 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8704 -0.4825 -3.7319 8 7 2.6264 -1.5517 -3.8525 9 14 1.2471 0.3976 -5.2572 10 1 0.4228 1.5648 -4.8530 11 1 2.4019 0.8641 -6.0661 12 1 0.4219 -0.5360 -6.0649 13 6 2.0400 -0.7212 1.2493 14 8 1.5560 -0.0366 2.4348 15 6 1.9184 -0.5481 3.6270 16 8 2.6190 -1.5390 3.6751 17 6 1.4622 0.0963 4.8774 18 6 1.8268 -0.4193 6.1265 19 6 1.3783 0.2133 7.2682 20 7 0.6163 1.2883 7.1925 21 8 0.1786 1.9047 8.3898 22 6 0.2455 1.8037 6.0353 23 6 0.6534 1.2381 4.8444 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7210 -1.2494 31 1 1.6767 -1.7490 -1.2491 32 1 2.8607 -1.8833 -4.7335 33 1 3.1301 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 2.4497 -1.2988 6.1959 36 1 1.6540 -0.1772 8.2366 37 1 -0.3823 2.6824 6.0202 38 1 0.3497 1.6675 3.9012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842785481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:09 Heat of formation + Delta-G solvation = -61.348275 kcal Electronic energy + Delta-G solvation = -21163.810746 eV Core-core repulsion = 17780.387571 eV Total energy + Delta-G solvation = -3383.423176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.56009 -41.35222 -38.80193 -36.98392 -35.78550 -34.39077 -33.03681 -31.46363 -29.32302 -28.14354 -27.90334 -26.39291 -25.43914 -24.83268 -22.46931 -20.04930 -19.59659 -18.79710 -18.32467 -17.95858 -17.60320 -17.43486 -16.67055 -16.48755 -16.46959 -15.33733 -15.28268 -15.16358 -14.76765 -14.19185 -14.05828 -13.87050 -13.61442 -13.19576 -12.99147 -12.70018 -12.67215 -12.32856 -12.27684 -12.25681 -11.98413 -11.86338 -11.85391 -11.35031 -11.02283 -10.86669 -10.81894 -10.80762 -10.51797 -10.09273 -8.14791 -6.21621 -1.09611 -0.45685 1.12217 1.30353 1.40501 1.42586 1.45143 1.55741 2.14705 2.44809 3.08897 3.20816 3.37226 3.38872 3.49513 3.77719 3.92621 3.97403 4.19515 4.26363 4.43035 4.54737 4.63304 4.63649 4.70347 4.77415 5.06986 5.11786 5.19221 5.30720 5.47073 5.52105 5.55715 5.56747 5.65612 5.72852 5.78941 5.90318 6.29477 6.46417 6.93278 7.46318 8.97865 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.041489 B = 0.003146 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.722402 B = 8897.249644 C = 9375.602628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.073 0.927 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.257 1.257 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.091 3.909 14 O -0.332 6.332 15 C 0.509 3.491 16 O -0.519 6.519 17 C -0.078 4.078 18 C -0.046 4.046 19 C 0.075 3.925 20 N -0.127 5.127 21 O -0.608 6.608 22 C 0.074 3.926 23 C -0.045 4.045 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.074 0.926 30 H -0.009 1.009 31 H -0.009 1.009 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.197 0.803 36 H 0.209 0.791 37 H 0.209 0.791 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 4.406 15.918 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.055 4.055 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.091 0.909 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.181 1.181 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.017 3.983 14 O -0.247 6.247 15 C 0.353 3.647 16 O -0.409 6.409 17 C -0.087 4.087 18 C -0.065 4.065 19 C -0.070 4.070 20 N 0.193 4.807 21 O -0.662 6.662 22 C -0.071 4.071 23 C -0.063 4.063 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.214 0.786 36 H 0.226 0.774 37 H 0.226 0.774 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.982 4.206 16.130 16.934 hybrid contribution 0.168 -0.235 -1.063 1.101 sum -2.814 3.971 15.067 15.833 Atomic orbital electron populations 1.21680 0.93334 1.00991 1.01914 1.20635 0.97232 0.96601 0.91034 1.21680 0.99756 0.94571 1.01914 1.19006 0.94600 0.94401 0.91941 1.21589 1.30352 1.12081 0.90932 0.90937 1.25891 0.95679 0.95839 1.02589 1.70105 1.38786 1.24913 1.24075 0.85532 0.78064 0.78880 0.79399 1.18071 1.21135 1.21125 1.23247 0.98727 0.95569 0.80747 1.86470 1.68958 1.55134 1.14185 1.21075 0.77265 0.81686 0.84699 1.90887 1.35856 1.25843 1.88289 1.19750 1.00423 0.97368 0.91172 1.22147 0.96333 1.00034 0.87961 1.23002 0.93165 0.87645 1.03159 1.43509 1.16392 1.11486 1.09302 1.97659 1.82310 1.73313 1.12946 1.23132 0.99825 1.01548 0.82612 1.22475 0.91834 0.92030 0.99967 0.90695 0.92862 0.94322 0.94323 0.92868 0.90691 0.99094 0.99092 0.93149 0.91785 0.91788 0.78585 0.77387 0.77375 0.77583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 8.08 71.98 0.58 -3.22 16 2 C -0.05 -1.90 0.61 -52.18 -0.03 -1.93 16 3 C -0.12 -3.80 8.08 71.98 0.58 -3.22 16 4 C 0.04 1.78 4.04 29.85 0.12 1.90 16 5 C -0.51 -26.11 7.65 25.60 0.20 -25.91 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -54.81 13.29 21.45 0.28 -54.53 16 9 Si 0.96 42.06 29.54 68.60 2.03 44.09 16 10 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.09 2.73 4.33 71.98 0.31 3.04 16 14 O -0.33 -7.57 8.23 -56.06 -0.46 -8.03 16 15 C 0.51 10.56 7.92 70.37 0.56 11.12 16 16 O -0.52 -13.95 16.23 20.00 0.32 -13.62 16 17 C -0.08 -1.04 5.91 -19.89 -0.12 -1.16 16 18 C -0.05 -0.49 9.68 22.63 0.22 -0.27 16 19 C 0.08 0.99 10.67 84.61 0.90 1.90 16 20 N -0.13 -2.59 3.58 -195.99 -0.70 -3.29 16 21 O -0.61 -21.24 20.04 -38.80 -0.78 -22.02 16 22 C 0.07 0.95 10.67 84.61 0.90 1.86 16 23 C -0.04 -0.42 9.70 22.63 0.22 -0.21 16 24 H 0.07 1.79 7.68 -2.39 -0.02 1.77 16 25 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.81 6.62 -2.38 -0.02 1.79 16 29 H 0.07 1.79 7.68 -2.39 -0.02 1.77 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.20 1.36 7.74 -2.91 -0.02 1.34 16 36 H 0.21 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.21 0.95 7.71 -2.91 -0.02 0.93 16 Total: -1.00 -77.74 328.02 6.66 -71.09 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.06 Total: 2.10 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 4.91 Total: -15.79 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.42 Total: -57.82 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.91 Total: -43.67 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -77.74 6.66 -71.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842785481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.738 kcal (2) G-P(sol) polarization free energy of solvation -77.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds