Wall clock time and date at job start Fri Apr 10 2020 17:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99863 * 2 1 4 4 C 1.53004 * 109.46940 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47129 * 64.99886 * 4 3 2 6 6 C 1.36738 * 120.00300 * 269.99988 * 5 4 3 7 7 H 1.08004 * 119.99915 * 21.67711 * 6 5 4 8 8 C 1.39070 * 120.00190 * 201.67295 * 6 5 4 9 9 N 1.31353 * 119.99954 * 13.43477 * 8 6 5 10 10 Si 1.86800 * 120.00039 * 193.42989 * 8 6 5 11 11 H 1.48494 * 109.47056 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47065 * 120.00480 * 10 8 6 13 13 H 1.48502 * 109.47292 * 240.00017 * 10 8 6 14 14 C 1.34781 * 119.99680 * 90.00080 * 5 4 3 15 15 O 1.21845 * 119.99711 * 242.35453 * 14 5 4 16 16 C 1.41330 * 120.00189 * 62.35308 * 14 5 4 17 17 C 1.50697 * 120.00181 * 4.71234 * 16 14 5 18 18 C 1.35787 * 120.00221 * 184.70501 * 16 14 5 19 19 C 1.41514 * 120.00190 * 174.41474 * 18 16 14 20 20 C 1.38035 * 126.10875 * 174.64253 * 19 18 16 21 21 C 1.40289 * 106.52767 * 180.02562 * 20 19 18 22 22 C 1.35176 * 107.21243 * 0.02562 * 21 20 19 23 23 O 1.34042 * 109.04372 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47194 * 299.99944 * 1 2 3 25 25 H 1.09000 * 109.47085 * 59.99974 * 1 2 3 26 26 H 1.09001 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47261 * 60.00041 * 3 2 1 28 28 H 1.09002 * 109.47271 * 299.99698 * 3 2 1 29 29 H 1.08995 * 109.47124 * 305.00344 * 4 3 2 30 30 H 1.09000 * 109.47163 * 184.99841 * 4 3 2 31 31 H 0.97004 * 120.00284 * 184.95266 * 9 8 6 32 32 H 1.09001 * 109.47541 * 240.96873 * 17 16 14 33 33 H 1.09005 * 109.46890 * 0.97126 * 17 16 14 34 34 H 1.09000 * 109.47438 * 120.96300 * 17 16 14 35 35 H 1.08000 * 119.99975 * 354.42266 * 18 16 14 36 36 H 1.08000 * 126.73899 * 0.02562 * 20 19 18 37 37 H 1.07999 * 126.40044 * 180.02562 * 21 20 19 38 38 H 1.08000 * 125.48080 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0976 -0.7955 -1.3344 7 1 3.5590 -1.4290 -0.6451 8 6 4.9142 -1.3626 -2.3069 9 7 5.7664 -0.6127 -2.9678 10 14 4.7990 -3.1907 -2.6732 11 1 3.7691 -3.8069 -1.7988 12 1 4.4219 -3.3876 -4.0960 13 1 6.1142 -3.8308 -2.4167 14 6 4.2634 1.3329 -2.3200 15 8 3.6143 1.2180 -3.3447 16 6 5.3168 2.2726 -2.2525 17 6 6.1875 2.3416 -1.0244 18 6 5.5446 3.1133 -3.2942 19 6 6.5207 4.1317 -3.1813 20 6 6.9270 4.9842 -4.1880 21 6 7.9044 5.8224 -3.6309 22 6 8.0539 5.4581 -2.3378 23 8 7.2221 4.4415 -2.0708 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8507 0.5685 0.8426 30 1 3.9784 2.1765 0.0902 31 1 6.2844 -0.9924 -3.6947 32 1 6.1004 3.3296 -0.5722 33 1 5.8666 1.5848 -0.3086 34 1 7.2253 2.1602 -1.3041 35 1 4.9808 3.0048 -4.2090 36 1 6.5638 5.0025 -5.2050 37 1 8.4378 6.6115 -4.1400 38 1 8.7343 5.9129 -1.6331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848212272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:23 Heat of formation + Delta-G solvation = -21.768439 kcal Electronic energy + Delta-G solvation = -22341.205784 eV Core-core repulsion = 18959.498919 eV Total energy + Delta-G solvation = -3381.706865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10966 -38.95948 -37.17026 -34.56597 -34.02483 -32.72074 -31.91036 -29.46585 -28.70659 -26.09180 -25.82742 -24.90449 -22.98565 -21.60205 -21.36741 -20.05520 -18.54814 -16.68049 -16.25883 -15.91928 -15.71318 -15.59631 -15.23700 -14.76229 -14.52598 -14.12353 -13.75897 -13.68073 -12.75840 -12.59667 -12.38436 -12.26003 -12.23212 -11.69526 -11.48192 -11.42815 -11.28789 -11.06804 -10.92763 -10.73851 -10.61671 -10.38238 -10.09785 -9.81430 -9.32578 -9.13194 -8.97781 -8.43771 -7.34877 -7.17741 -6.12412 -3.51016 1.20369 2.57115 3.24311 3.36588 3.40880 3.42000 3.44290 4.29871 4.35411 4.48141 4.97517 5.20140 5.26912 5.32932 5.47978 5.57630 5.67851 5.80744 5.83861 5.87796 5.96760 5.99207 6.05347 6.10951 6.12736 6.14503 6.34559 6.45314 6.58168 6.64031 6.73817 6.80290 7.16267 7.27361 7.56176 7.69489 7.74111 8.19825 9.04302 9.34868 9.56412 10.03823 10.98953 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.006010 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.021109 B = 4657.898295 C = 5722.251796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.045 3.955 4 C 0.126 3.874 5 N -0.528 5.528 6 C -0.261 4.261 7 H 0.090 0.910 8 C 0.018 3.982 9 N -0.878 5.878 10 Si 0.919 3.081 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.287 1.287 14 C 0.593 3.407 15 O -0.534 6.534 16 C -0.071 4.071 17 C -0.110 4.110 18 C -0.103 4.103 19 C 0.054 3.946 20 C -0.219 4.219 21 C -0.209 4.209 22 C -0.065 4.065 23 O -0.161 6.161 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 9.782 5.043 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C -0.033 4.033 4 C 0.001 3.999 5 N -0.255 5.255 6 C -0.388 4.388 7 H 0.107 0.893 8 C -0.184 4.184 9 N -0.520 5.520 10 Si 0.748 3.252 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.213 1.213 14 C 0.388 3.612 15 O -0.412 6.412 16 C -0.075 4.075 17 C -0.166 4.166 18 C -0.124 4.124 19 C 0.004 3.996 20 C -0.238 4.238 21 C -0.228 4.228 22 C -0.134 4.134 23 O -0.057 6.057 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.030 9.322 4.690 10.435 hybrid contribution 0.042 -0.564 -0.619 0.839 sum 0.071 8.758 4.071 9.658 Atomic orbital electron populations 1.22646 0.82901 1.01977 0.98920 1.88070 1.17935 1.27437 1.95053 1.23238 0.96469 0.84909 0.98705 1.21271 0.90808 0.98026 0.89814 1.42507 1.69870 1.05563 1.07585 1.19423 1.21460 0.80346 1.17597 0.89273 1.25147 0.94483 0.99589 0.99184 1.69309 1.23472 1.37169 1.22050 0.85975 0.77524 0.83379 0.78371 1.19607 1.21143 1.21342 1.16022 0.82752 0.78806 0.83603 1.90567 1.50110 1.66299 1.34236 1.21601 0.96881 0.93167 0.95851 1.20883 0.98846 1.00987 0.95910 1.20259 0.97525 0.94172 1.00438 1.20092 0.96331 0.98843 0.84324 1.22091 1.02186 0.99514 1.00055 1.21591 1.02565 1.03524 0.95123 1.24043 0.98400 0.92951 0.97987 1.84319 1.42679 1.42633 1.36051 0.95147 0.94683 0.90292 0.94136 0.93888 0.90867 0.91210 0.92049 0.92115 0.90470 0.91517 0.83417 0.83643 0.84016 0.78792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.27 9.96 -35.23 -0.35 -7.62 16 3 C 0.05 0.82 6.28 37.16 0.23 1.05 16 4 C 0.13 2.46 4.76 -4.04 -0.02 2.44 16 5 N -0.53 -13.09 1.86 -118.14 -0.22 -13.31 16 6 C -0.26 -7.07 9.14 -15.06 -0.14 -7.21 16 7 H 0.09 2.40 7.61 -52.48 -0.40 2.00 16 8 C 0.02 0.50 5.17 -17.45 -0.09 0.41 16 9 N -0.88 -25.21 11.07 55.50 0.61 -24.60 16 10 Si 0.92 22.06 29.58 -169.99 -5.03 17.04 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 14 C 0.59 15.32 3.83 -15.08 -0.06 15.26 16 15 O -0.53 -15.63 16.63 5.06 0.08 -15.55 16 16 C -0.07 -1.59 5.33 -104.33 -0.56 -2.14 16 17 C -0.11 -2.15 7.21 36.00 0.26 -1.89 16 18 C -0.10 -2.15 9.39 -39.21 -0.37 -2.52 16 19 C 0.05 0.99 6.70 -38.41 -0.26 0.73 16 20 C -0.22 -3.49 10.90 -38.89 -0.42 -3.91 16 21 C -0.21 -2.83 10.87 -39.90 -0.43 -3.27 16 22 C -0.07 -0.87 12.06 29.64 0.36 -0.52 16 23 O -0.16 -2.70 7.33 4.61 0.03 -2.67 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 30 H 0.07 1.19 6.41 -51.93 -0.33 0.86 16 31 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.06 1.03 6.92 -51.93 -0.36 0.67 16 33 H 0.08 1.55 5.70 -51.93 -0.30 1.26 16 34 H 0.07 1.35 7.74 -51.93 -0.40 0.95 16 35 H 0.15 3.16 7.47 -52.49 -0.39 2.77 16 36 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -33.24 323.49 -5.49 -38.73 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.12 Total: 3.06 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.38 Total: 0.04 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.39 Total: -37.91 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.23 Total: -25.84 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.24 -5.49 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848212272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.960 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds