Wall clock time and date at job start Fri Apr 10 2020 17:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99863 * 2 1 4 4 C 1.53004 * 109.46940 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47129 * 64.99886 * 4 3 2 6 6 C 1.36738 * 120.00300 * 269.99988 * 5 4 3 7 7 H 1.08004 * 119.99915 * 21.67711 * 6 5 4 8 8 C 1.39070 * 120.00190 * 201.67295 * 6 5 4 9 9 N 1.31353 * 119.99954 * 13.43477 * 8 6 5 10 10 Si 1.86800 * 120.00039 * 193.42989 * 8 6 5 11 11 H 1.48494 * 109.47056 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47065 * 120.00480 * 10 8 6 13 13 H 1.48502 * 109.47292 * 240.00017 * 10 8 6 14 14 C 1.34781 * 119.99680 * 90.00080 * 5 4 3 15 15 O 1.21845 * 119.99711 * 242.35453 * 14 5 4 16 16 C 1.41330 * 120.00189 * 62.35308 * 14 5 4 17 17 C 1.50697 * 120.00181 * 4.71234 * 16 14 5 18 18 C 1.35787 * 120.00221 * 184.70501 * 16 14 5 19 19 C 1.41514 * 120.00190 * 174.41474 * 18 16 14 20 20 C 1.38035 * 126.10875 * 174.64253 * 19 18 16 21 21 C 1.40289 * 106.52767 * 180.02562 * 20 19 18 22 22 C 1.35176 * 107.21243 * 0.02562 * 21 20 19 23 23 O 1.34042 * 109.04372 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47194 * 299.99944 * 1 2 3 25 25 H 1.09000 * 109.47085 * 59.99974 * 1 2 3 26 26 H 1.09001 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47261 * 60.00041 * 3 2 1 28 28 H 1.09002 * 109.47271 * 299.99698 * 3 2 1 29 29 H 1.08995 * 109.47124 * 305.00344 * 4 3 2 30 30 H 1.09000 * 109.47163 * 184.99841 * 4 3 2 31 31 H 0.97004 * 120.00284 * 184.95266 * 9 8 6 32 32 H 1.09001 * 109.47541 * 240.96873 * 17 16 14 33 33 H 1.09005 * 109.46890 * 0.97126 * 17 16 14 34 34 H 1.09000 * 109.47438 * 120.96300 * 17 16 14 35 35 H 1.08000 * 119.99975 * 354.42266 * 18 16 14 36 36 H 1.08000 * 126.73899 * 0.02562 * 20 19 18 37 37 H 1.07999 * 126.40044 * 180.02562 * 21 20 19 38 38 H 1.08000 * 125.48080 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0976 -0.7955 -1.3344 7 1 3.5590 -1.4290 -0.6451 8 6 4.9142 -1.3626 -2.3069 9 7 5.7664 -0.6127 -2.9678 10 14 4.7990 -3.1907 -2.6732 11 1 3.7691 -3.8069 -1.7988 12 1 4.4219 -3.3876 -4.0960 13 1 6.1142 -3.8308 -2.4167 14 6 4.2634 1.3329 -2.3200 15 8 3.6143 1.2180 -3.3447 16 6 5.3168 2.2726 -2.2525 17 6 6.1875 2.3416 -1.0244 18 6 5.5446 3.1133 -3.2942 19 6 6.5207 4.1317 -3.1813 20 6 6.9270 4.9842 -4.1880 21 6 7.9044 5.8224 -3.6309 22 6 8.0539 5.4581 -2.3378 23 8 7.2221 4.4415 -2.0708 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8507 0.5685 0.8426 30 1 3.9784 2.1765 0.0902 31 1 6.2844 -0.9924 -3.6947 32 1 6.1004 3.3296 -0.5722 33 1 5.8666 1.5848 -0.3086 34 1 7.2253 2.1602 -1.3041 35 1 4.9808 3.0048 -4.2090 36 1 6.5638 5.0025 -5.2050 37 1 8.4378 6.6115 -4.1400 38 1 8.7343 5.9129 -1.6331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848212272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:23 Heat of formation + Delta-G solvation = -43.297945 kcal Electronic energy + Delta-G solvation = -22342.139373 eV Core-core repulsion = 18959.498919 eV Total energy + Delta-G solvation = -3382.640454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.35055 -40.79035 -38.63799 -36.36807 -35.75303 -33.96763 -33.80287 -30.86003 -30.30914 -27.55528 -27.26904 -26.70259 -24.60862 -23.12863 -22.55785 -21.56210 -20.18470 -18.41160 -17.62928 -17.47801 -17.22601 -16.99335 -16.85570 -16.47593 -16.17824 -15.60687 -15.56266 -15.21892 -14.31821 -13.89952 -13.73316 -13.61681 -13.49731 -13.40944 -13.13791 -13.03836 -12.88871 -12.77918 -12.69886 -12.41912 -12.31402 -12.07673 -11.91012 -11.21809 -10.94766 -10.59366 -10.54355 -10.37411 -9.26326 -8.64279 -8.13730 -5.58738 -0.30410 1.30717 1.42187 1.44936 1.54904 1.88363 2.20593 2.37710 2.65492 3.01792 3.25846 3.33169 4.04213 4.12698 4.21713 4.27635 4.28731 4.37467 4.48458 4.51056 4.57272 4.60286 4.66636 4.75669 4.84779 4.89708 5.00426 5.04195 5.10636 5.16424 5.21966 5.47174 5.58372 5.67688 5.75450 6.18993 6.28825 6.41744 7.02837 7.39631 7.68184 8.07348 8.93578 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.006010 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.021109 B = 4657.898295 C = 5722.251796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.049 3.951 4 C 0.122 3.878 5 N -0.546 5.546 6 C -0.268 4.268 7 H 0.085 0.915 8 C -0.035 4.035 9 N -0.909 5.909 10 Si 0.976 3.024 11 H -0.262 1.262 12 H -0.298 1.298 13 H -0.278 1.278 14 C 0.600 3.400 15 O -0.590 6.590 16 C -0.120 4.120 17 C -0.086 4.086 18 C -0.068 4.068 19 C -0.002 4.002 20 C -0.196 4.196 21 C -0.220 4.220 22 C -0.038 4.038 23 O -0.172 6.172 24 H 0.061 0.939 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.022 0.978 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.259 0.741 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.178 0.822 38 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 12.095 6.255 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.274 5.274 6 C -0.397 4.397 7 H 0.103 0.897 8 C -0.233 4.233 9 N -0.552 5.552 10 Si 0.803 3.197 11 H -0.186 1.186 12 H -0.225 1.225 13 H -0.204 1.204 14 C 0.398 3.602 15 O -0.472 6.472 16 C -0.124 4.124 17 C -0.142 4.142 18 C -0.089 4.089 19 C -0.051 4.051 20 C -0.215 4.215 21 C -0.239 4.239 22 C -0.106 4.106 23 O -0.068 6.068 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.175 0.825 37 H 0.195 0.805 38 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.222 11.645 5.951 13.134 hybrid contribution -0.259 -0.940 -1.069 1.447 sum 0.964 10.705 4.881 11.805 Atomic orbital electron populations 1.22838 0.80703 1.03139 1.00153 1.88005 1.20507 1.28476 1.95327 1.23199 0.95311 0.84661 0.99714 1.21530 0.91927 0.98954 0.87778 1.42630 1.70587 1.04982 1.09154 1.19533 1.20948 0.81688 1.17496 0.89736 1.25916 0.94753 1.03149 0.99515 1.69467 1.24722 1.38209 1.22812 0.85098 0.77903 0.79477 0.77248 1.18592 1.22515 1.20434 1.16585 0.82259 0.78578 0.82789 1.90514 1.52134 1.68545 1.36010 1.21456 0.97829 0.94773 0.98311 1.20658 0.97241 1.01927 0.94402 1.20273 0.96378 0.93404 0.98827 1.19766 0.98773 1.00516 0.86082 1.22540 1.01012 0.97900 1.00090 1.22033 1.02276 1.04179 0.95368 1.25164 0.96178 0.90267 0.98952 1.84291 1.43083 1.43758 1.35688 0.92046 0.95179 0.89303 0.89732 0.95974 0.90198 0.88920 0.93027 0.89635 0.91568 0.92732 0.85136 0.82456 0.80477 0.74023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -15.98 9.96 -148.98 -1.48 -17.46 16 3 C 0.05 1.76 6.28 71.98 0.45 2.21 16 4 C 0.12 4.77 4.76 86.38 0.41 5.18 16 5 N -0.55 -27.92 1.86 -645.85 -1.20 -29.13 16 6 C -0.27 -15.04 9.14 84.13 0.77 -14.27 16 7 H 0.08 4.68 7.61 -2.91 -0.02 4.66 16 8 C -0.04 -2.03 5.17 84.96 0.44 -1.59 16 9 N -0.91 -54.43 11.07 21.68 0.24 -54.19 16 10 Si 0.98 46.87 29.58 68.60 2.03 48.90 16 11 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 C 0.60 32.34 3.83 85.00 0.33 32.67 16 15 O -0.59 -36.53 16.63 -4.81 -0.08 -36.61 16 16 C -0.12 -5.54 5.33 -19.67 -0.10 -5.64 16 17 C -0.09 -3.37 7.21 71.24 0.51 -2.86 16 18 C -0.07 -2.91 9.39 22.51 0.21 -2.70 16 19 C 0.00 -0.08 6.70 23.03 0.15 0.08 16 20 C -0.20 -5.72 10.90 22.72 0.25 -5.47 16 21 C -0.22 -4.93 10.87 22.06 0.24 -4.69 16 22 C -0.04 -0.82 12.06 67.11 0.81 -0.01 16 23 O -0.17 -5.30 7.33 -6.42 -0.05 -5.35 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 2.98 8.04 -2.39 -0.02 2.96 16 30 H 0.09 3.12 6.41 -2.39 -0.02 3.11 16 31 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.09 2.80 6.92 -2.39 -0.02 2.78 16 33 H 0.07 2.69 5.70 -2.38 -0.01 2.68 16 34 H 0.05 2.22 7.74 -2.39 -0.02 2.20 16 35 H 0.13 5.88 7.47 -2.91 -0.02 5.86 16 36 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 38 H 0.24 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -76.63 323.49 6.23 -70.41 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.06 Total: 18.46 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.72 Total: 4.98 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -0.96 Total: -83.32 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -1.61 Total: -59.42 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.63 6.23 -70.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848212272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.109 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds