Wall clock time and date at job start Fri Apr 10 2020 17:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99953 * 2 1 4 4 H 1.48503 * 109.46793 * 239.99892 * 3 2 1 5 5 H 1.48497 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47089 * 120.00338 * 3 2 1 7 7 C 1.37877 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99569 * 171.04748 * 7 2 1 9 9 C 1.50698 * 120.00292 * 351.04304 * 7 2 1 10 10 C 1.52998 * 115.54818 * 324.59900 * 9 7 2 11 11 N 1.46505 * 109.46646 * 186.11253 * 10 9 7 12 12 C 1.33975 * 124.37057 * 269.04420 * 11 10 9 13 13 O 1.21461 * 123.81456 * 0.02825 * 12 11 10 14 14 O 1.34589 * 112.36963 * 180.02562 * 12 11 10 15 15 C 1.45076 * 106.50694 * 359.97438 * 14 12 11 16 16 C 1.53071 * 111.43044 * 239.71892 * 15 14 12 17 17 C 1.54491 * 106.27757 * 238.17647 * 16 15 14 18 18 C 1.54966 * 104.21557 * 336.50825 * 17 16 15 19 19 C 1.53474 * 111.19027 * 119.88129 * 15 14 12 20 20 C 1.35081 * 124.37304 * 89.07760 * 11 10 9 21 21 O 1.21233 * 127.39306 * 0.02562 * 20 11 10 22 22 C 1.53004 * 117.49868 * 110.27080 * 9 7 2 23 23 C 1.52998 * 117.50110 * 178.92878 * 9 7 2 24 24 H 0.97002 * 120.00488 * 5.00907 * 1 2 3 25 25 H 1.08994 * 109.46964 * 66.11485 * 10 9 7 26 26 H 1.08995 * 109.47596 * 306.10961 * 10 9 7 27 27 H 1.08997 * 110.09734 * 357.37917 * 16 15 14 28 28 H 1.08999 * 110.09247 * 118.97905 * 16 15 14 29 29 H 1.09003 * 110.48008 * 95.18661 * 17 16 15 30 30 H 1.08994 * 110.48639 * 217.82057 * 17 16 15 31 31 H 1.09002 * 110.73475 * 279.16088 * 18 17 16 32 32 H 1.09005 * 110.73595 * 155.84604 * 18 17 16 33 33 H 1.09002 * 110.52091 * 263.91596 * 19 15 14 34 34 H 1.08991 * 110.52934 * 26.52843 * 19 15 14 35 35 H 1.08996 * 117.49519 * 215.00793 * 22 9 7 36 36 H 1.09002 * 117.49660 * 0.02562 * 22 9 7 37 37 H 1.09007 * 117.49372 * 359.97438 * 23 9 7 38 38 H 1.09001 * 117.50480 * 144.97086 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0746 -1.1998 -0.1450 9 6 1.2647 -2.4911 0.2043 10 6 0.0801 -2.4304 1.1707 11 7 -0.4473 -3.7807 1.3821 12 6 -1.4219 -4.3354 0.6490 13 8 -1.9752 -3.7742 -0.2753 14 8 -1.7185 -5.5847 1.0524 15 6 -0.8409 -5.8762 2.1702 16 6 0.0440 -7.0919 1.8842 17 6 -0.2541 -8.1169 3.0011 18 6 -0.7994 -7.2580 4.1700 19 6 -1.6446 -6.1810 3.4417 20 6 -0.0142 -4.6271 2.3417 21 8 0.8528 -4.4254 3.1646 22 6 1.1510 -3.4354 -0.9942 23 6 2.0824 -3.7838 0.1694 24 1 -0.4851 0.8368 -0.0733 25 1 -0.7005 -1.7972 0.7492 26 1 0.4093 -2.0157 2.1235 27 1 -0.2046 -7.5156 0.9112 28 1 1.0951 -6.8045 1.9106 29 1 -1.0065 -8.8330 2.6706 30 1 0.6588 -8.6320 3.2997 31 1 0.0182 -6.7973 4.7245 32 1 -1.4252 -7.8581 4.8306 33 1 -1.7379 -5.2870 4.0582 34 1 -2.6292 -6.5727 3.1867 35 1 0.2322 -4.0132 -1.0942 36 1 1.6116 -3.1186 -1.9300 37 1 3.1554 -3.6961 -0.0013 38 1 1.7768 -4.5909 0.8353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853703981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:49 Heat of formation + Delta-G solvation = -71.913352 kcal Electronic energy + Delta-G solvation = -23229.810655 eV Core-core repulsion = 19845.929343 eV Total energy + Delta-G solvation = -3383.881312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.68234 -38.68626 -38.19218 -36.50301 -36.19630 -34.18576 -32.27513 -29.19827 -28.92256 -27.16140 -25.57107 -23.47260 -21.68628 -21.38147 -21.04044 -20.75415 -19.08323 -17.25185 -17.00825 -16.64812 -16.17368 -15.99788 -15.23342 -14.95934 -14.57512 -14.46224 -14.19180 -13.81554 -13.33845 -12.90412 -12.63964 -12.33220 -12.13032 -11.99410 -11.66967 -11.46592 -11.41691 -11.02672 -10.92027 -10.87269 -10.80986 -10.69953 -10.45835 -10.29953 -10.20237 -9.73804 -9.19118 -9.05572 -8.74607 -8.17744 -6.17737 -4.22425 1.72869 2.54591 3.14738 3.20916 3.24679 3.29968 3.32629 3.90282 4.16072 4.17430 4.28111 4.80476 4.87557 5.03756 5.04530 5.15603 5.32948 5.38251 5.44164 5.52582 5.63293 5.73871 5.82344 5.87492 5.94235 6.01641 6.08024 6.28003 6.30132 6.56939 6.68856 6.89967 7.03309 7.24393 7.37789 7.48125 7.57023 7.81149 8.06626 8.27767 8.74312 9.37958 10.85345 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.029605 B = 0.005555 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.553725 B = 5039.033552 C = 5209.073443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.487 4.487 8 H 0.067 0.933 9 C 0.044 3.956 10 C 0.150 3.850 11 N -0.573 5.573 12 C 0.641 3.359 13 O -0.463 6.463 14 O -0.309 6.309 15 C 0.055 3.945 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.113 4.113 20 C 0.511 3.489 21 O -0.450 6.450 22 C -0.201 4.201 23 C -0.209 4.209 24 H 0.269 0.731 25 H 0.145 0.855 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.883 -13.484 7.356 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.525 4.525 8 H 0.085 0.915 9 C 0.043 3.957 10 C 0.033 3.967 11 N -0.327 5.327 12 C 0.394 3.606 13 O -0.342 6.342 14 O -0.221 6.221 15 C 0.013 3.987 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.151 4.151 20 C 0.297 3.703 21 O -0.320 6.320 22 C -0.239 4.239 23 C -0.247 4.247 24 H 0.079 0.921 25 H 0.162 0.838 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.046 -13.066 7.285 15.267 hybrid contribution 0.521 0.900 -0.259 1.071 sum -2.525 -12.166 7.027 14.275 Atomic orbital electron populations 1.69671 1.05986 1.27550 1.48913 1.25055 0.94988 0.99568 0.93958 0.86444 0.79507 0.82047 0.78874 1.20078 1.21009 1.19909 1.20447 0.93740 0.88338 1.49963 0.91492 1.19277 0.93228 0.89695 0.93529 1.22085 0.99626 0.74663 1.00337 1.47520 1.34786 1.19681 1.30696 1.18448 0.79562 0.80374 0.82167 1.91109 1.54166 1.62239 1.26717 1.87753 1.56978 1.30316 1.47023 1.23504 0.91006 0.96384 0.87787 1.22244 0.99153 0.92660 1.01447 1.22380 1.01706 0.97122 0.94342 1.22547 0.99629 0.96273 0.97487 1.22437 0.99529 1.00875 0.92255 1.20795 0.82928 0.85650 0.80945 1.90773 1.28146 1.78573 1.34544 1.23042 0.99323 1.07026 0.94461 1.22917 0.97284 1.01522 1.02940 0.92106 0.83793 0.89993 0.88908 0.89429 0.90722 0.90468 0.90163 0.90246 0.90029 0.88585 0.91694 0.90086 0.90261 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.11 10.70 55.43 0.59 -23.51 16 2 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 3 Si 0.90 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.49 -13.14 9.05 -34.44 -0.31 -13.45 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.37 16 9 C 0.04 1.10 2.38 -155.66 -0.37 0.73 16 10 C 0.15 3.58 5.01 -4.04 -0.02 3.56 16 11 N -0.57 -11.82 1.86 -120.92 -0.22 -12.04 16 12 C 0.64 13.13 7.38 53.70 0.40 13.53 16 13 O -0.46 -10.96 16.67 -18.97 -0.32 -11.27 16 14 O -0.31 -5.22 10.67 -39.92 -0.43 -5.65 16 15 C 0.05 0.79 1.30 -91.46 -0.12 0.67 16 16 C -0.12 -1.38 6.32 -25.91 -0.16 -1.55 16 17 C -0.12 -1.02 6.85 -24.91 -0.17 -1.19 16 18 C -0.12 -1.08 6.92 -24.60 -0.17 -1.25 16 19 C -0.11 -1.25 6.17 -25.39 -0.16 -1.41 16 20 C 0.51 9.26 4.66 -10.82 -0.05 9.21 16 21 O -0.45 -8.86 17.59 5.60 0.10 -8.76 16 22 C -0.20 -4.79 9.63 -26.69 -0.26 -5.05 16 23 C -0.21 -4.72 9.56 -26.70 -0.26 -4.98 16 24 H 0.27 6.98 8.32 -40.82 -0.34 6.64 16 25 H 0.14 3.80 5.72 -51.93 -0.30 3.50 16 26 H 0.08 1.98 8.05 -51.93 -0.42 1.56 16 27 H 0.09 1.04 8.00 -51.93 -0.42 0.63 16 28 H 0.09 1.10 7.71 -51.93 -0.40 0.70 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.93 7.83 -51.93 -0.41 0.52 16 34 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 35 H 0.06 1.55 5.60 -51.93 -0.29 1.26 16 36 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 37 H 0.08 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.06 1.24 5.61 -51.93 -0.29 0.94 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -29.49 310.49 -7.39 -36.88 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.02 Total: 3.64 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.74 Total: 0.52 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.37 Total: -35.55 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.64 Total: -25.69 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.49 -7.39 -36.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853703981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.035 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds