Wall clock time and date at job start Fri Apr 10 2020 17:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47487 * 2 1 4 4 C 1.50699 * 109.47455 * 119.99919 * 2 1 3 5 5 N 1.30003 * 127.33800 * 300.03071 * 4 2 1 6 6 O 1.20647 * 112.32513 * 179.97438 * 5 4 2 7 7 C 1.33474 * 113.17650 * 0.02562 * 6 5 4 8 8 C 1.37441 * 106.32332 * 359.71615 * 7 6 5 9 9 C 1.47256 * 128.57301 * 180.28269 * 8 7 6 10 10 O 1.21528 * 120.00246 * 174.55796 * 9 8 7 11 11 O 1.34763 * 119.99853 * 354.54827 * 9 8 7 12 12 C 1.45203 * 116.99913 * 184.44112 * 11 9 8 13 13 C 1.53003 * 109.47056 * 184.22832 * 12 11 9 14 14 C 1.50699 * 115.54891 * 306.65237 * 13 12 11 15 15 H 1.07996 * 119.99461 * 144.84582 * 14 13 12 16 16 C 1.37874 * 120.00185 * 324.84325 * 14 13 12 17 17 N 1.31511 * 119.99989 * 350.78801 * 16 14 13 18 18 Si 1.86803 * 120.00090 * 170.78281 * 16 14 13 19 19 H 1.48497 * 109.47000 * 60.00195 * 18 16 14 20 20 H 1.48497 * 109.46997 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46865 * 300.00369 * 18 16 14 22 22 C 1.52998 * 117.49397 * 160.98184 * 13 12 11 23 23 C 1.53003 * 117.49446 * 92.32357 * 13 12 11 24 24 H 1.08993 * 109.47177 * 300.00013 * 1 2 3 25 25 H 1.08995 * 109.47291 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46700 * 60.00214 * 1 2 3 27 27 H 1.09003 * 109.47343 * 239.99892 * 2 1 3 28 28 H 1.09003 * 109.46917 * 59.99631 * 3 2 1 29 29 H 1.08999 * 109.47686 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47148 * 300.00144 * 3 2 1 31 31 H 1.07995 * 126.84146 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.47325 * 304.23082 * 12 11 9 33 33 H 1.08996 * 109.46736 * 64.23033 * 12 11 9 34 34 H 0.97001 * 120.00404 * 185.02830 * 17 16 14 35 35 H 1.09000 * 117.50231 * 0.02562 * 22 13 12 36 36 H 1.09005 * 117.49695 * 145.02082 * 22 13 12 37 37 H 1.09005 * 117.49122 * 214.97640 * 23 13 12 38 38 H 1.08997 * 117.50261 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.8075 -0.3933 2.4710 6 8 2.3431 -1.1511 3.2420 7 6 3.0298 -2.1208 2.6339 8 6 2.8768 -1.9142 1.2838 9 6 3.4246 -2.7016 0.1666 10 8 3.1091 -2.4358 -0.9765 11 8 4.2761 -3.7170 0.4117 12 6 4.8536 -4.3858 -0.7405 13 6 5.7037 -5.5680 -0.2710 14 6 6.7549 -5.2442 0.7592 15 1 6.9927 -5.9606 1.5315 16 6 7.4129 -4.0333 0.7157 17 7 7.2588 -3.2381 -0.3204 18 14 8.5231 -3.5223 2.1284 19 1 9.6137 -4.5177 2.2859 20 1 9.1078 -2.1880 1.8407 21 1 7.7297 -3.4547 3.3819 22 6 6.0315 -6.6542 -1.2975 23 6 5.0233 -6.9355 -0.1804 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 3.5902 -2.9127 3.1083 32 1 4.0553 -4.7471 -1.3889 33 1 5.4798 -3.6842 -1.2917 34 1 7.7769 -2.4207 -0.3857 35 1 5.6419 -6.5263 -2.3074 36 1 7.0073 -7.1349 -1.2274 37 1 5.3364 -7.6010 0.6241 38 1 3.9701 -6.9927 -0.4549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860231465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:10:52 Heat of formation + Delta-G solvation = -22.830763 kcal Electronic energy + Delta-G solvation = -22123.836267 eV Core-core repulsion = 18742.083336 eV Total energy + Delta-G solvation = -3381.752931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.04542 -41.11647 -38.59506 -37.43774 -36.69731 -34.16997 -33.81084 -32.75000 -28.70436 -28.15266 -27.46574 -25.87659 -24.68226 -23.00789 -22.08126 -21.15328 -20.99684 -19.15849 -18.80281 -18.52332 -17.93342 -17.22288 -17.04405 -16.47127 -15.84595 -15.75780 -15.38526 -14.90489 -14.57702 -14.32438 -13.94298 -13.78482 -13.42421 -13.17176 -12.92223 -12.82365 -12.77458 -12.41161 -12.36246 -12.32625 -12.12769 -12.07409 -11.64459 -11.40969 -11.28556 -11.09003 -11.03165 -10.86215 -10.65621 -10.07299 -8.04679 -6.16494 -0.10597 0.61052 1.45010 1.47146 1.51121 1.54063 1.89309 2.20049 2.43892 2.86975 3.04442 3.13415 3.59190 3.77352 3.96467 4.07222 4.08050 4.12839 4.22240 4.39120 4.53624 4.58695 4.65513 4.68889 4.76579 4.82833 4.86999 4.93292 4.98929 5.04147 5.19534 5.22008 5.29686 5.40944 5.53242 5.69350 5.83919 6.34597 6.75324 6.87107 7.07040 7.46294 8.94062 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.005703 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.953575 B = 4908.812533 C = 5535.808415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.033 4.033 3 C -0.137 4.137 4 C 0.077 3.923 5 N -0.363 5.363 6 O 0.100 5.900 7 C 0.056 3.944 8 C -0.276 4.276 9 C 0.536 3.464 10 O -0.539 6.539 11 O -0.327 6.327 12 C 0.129 3.871 13 C 0.008 3.992 14 C -0.495 4.495 15 H 0.059 0.941 16 C 0.033 3.967 17 N -0.909 5.909 18 Si 0.948 3.052 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.262 1.262 22 C -0.187 4.187 23 C -0.185 4.185 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.266 0.734 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.259 0.741 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.119 4.546 3.997 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 C -0.194 4.194 4 C -0.086 4.086 5 N -0.071 5.071 6 O 0.044 5.956 7 C -0.026 4.026 8 C -0.281 4.281 9 C 0.382 3.618 10 O -0.432 6.432 11 O -0.241 6.241 12 C 0.056 3.944 13 C 0.008 3.992 14 C -0.532 4.532 15 H 0.078 0.922 16 C -0.167 4.167 17 N -0.547 5.547 18 Si 0.774 3.226 19 H -0.198 1.198 20 H -0.218 1.218 21 H -0.186 1.186 22 C -0.225 4.225 23 C -0.222 4.222 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.281 0.719 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.847 5.736 4.277 12.994 hybrid contribution 1.371 -0.491 -0.378 1.505 sum -9.475 5.245 3.899 11.511 Atomic orbital electron populations 1.21760 0.91511 1.02197 1.03615 1.19920 0.97821 0.96285 0.91195 1.21790 1.00532 0.93416 1.03692 1.25076 0.95834 0.92981 0.94707 1.73578 1.17815 1.14415 1.01252 1.84562 1.48110 1.29499 1.33474 1.27211 0.91820 0.92463 0.91091 1.21463 1.10792 1.02076 0.93797 1.19891 0.76258 0.78545 0.87107 1.90721 1.60060 1.68510 1.23948 1.86522 1.54173 1.43090 1.40362 1.22595 0.93011 0.94638 0.84162 1.19040 0.96390 0.85534 0.98278 1.20621 1.19814 1.01176 1.11631 0.92247 1.25570 0.97719 0.95886 0.97499 1.69921 1.41182 1.13721 1.29866 0.85761 0.79175 0.77062 0.80630 1.19789 1.21769 1.18648 1.22982 0.99503 1.06050 0.93994 1.22992 0.96600 1.01520 1.01114 0.91739 0.93202 0.89416 0.89169 0.91665 0.93890 0.89300 0.71877 0.94704 0.89839 0.93134 0.90187 0.89917 0.89422 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.18 71.98 0.66 -2.28 16 2 C -0.03 -0.91 3.33 -11.54 -0.04 -0.95 16 3 C -0.14 -3.23 9.18 71.98 0.66 -2.57 16 4 C 0.08 2.42 6.09 45.17 0.28 2.70 16 5 N -0.36 -10.66 12.01 -44.74 -0.54 -11.20 16 6 O 0.10 2.66 11.06 77.17 0.85 3.51 16 7 C 0.06 1.51 12.24 67.63 0.83 2.33 16 8 C -0.28 -9.55 6.46 -18.76 -0.12 -9.67 16 9 C 0.54 22.74 7.95 70.19 0.56 23.30 16 10 O -0.54 -24.73 14.99 19.74 0.30 -24.44 16 11 O -0.33 -14.98 9.76 -56.74 -0.55 -15.53 16 12 C 0.13 6.22 4.58 71.98 0.33 6.55 16 13 C 0.01 0.38 2.14 -52.93 -0.11 0.27 16 14 C -0.50 -25.47 8.77 25.60 0.22 -25.25 16 15 H 0.06 3.01 7.83 -2.91 -0.02 2.98 16 16 C 0.03 1.73 5.19 84.65 0.44 2.17 16 17 N -0.91 -49.67 10.71 21.45 0.23 -49.44 16 18 Si 0.95 41.02 29.55 68.60 2.03 43.05 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 C -0.19 -7.89 9.96 30.62 0.30 -7.58 16 23 C -0.19 -7.36 9.92 30.62 0.30 -7.06 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 2.93 6.32 -2.39 -0.02 2.91 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.27 5.37 8.06 -2.91 -0.02 5.35 16 32 H 0.03 1.59 7.94 -2.38 -0.02 1.57 16 33 H 0.08 4.54 6.04 -2.39 -0.01 4.53 16 34 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 35 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 37 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -61.15 330.30 7.69 -53.46 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.06 Total: 18.63 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 4.31 Total: -18.05 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.31 Total: -60.64 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: 0.60 Total: -36.46 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -61.15 7.69 -53.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860231465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.629 kcal (2) G-P(sol) polarization free energy of solvation -61.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds