Wall clock time and date at job start Fri Apr 10 2020 17:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35302 * 128.04440 * 2 1 4 4 O 1.34020 * 106.68326 * 179.97438 * 3 2 1 5 5 N 1.20910 * 111.84778 * 359.70923 * 4 3 2 6 6 C 1.31014 * 111.43357 * 0.48350 * 5 4 3 7 7 C 1.48247 * 126.94110 * 179.80394 * 6 5 4 8 8 O 1.21406 * 119.99667 * 179.68778 * 7 6 5 9 9 O 1.34647 * 119.99749 * 359.67718 * 7 6 5 10 10 C 1.45210 * 116.99425 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46809 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.41523 * 54.99773 * 11 10 9 13 13 C 1.52956 * 109.41338 * 174.86067 * 11 10 9 14 14 C 1.53234 * 109.40414 * 183.70014 * 13 11 10 15 15 C 1.51263 * 108.53392 * 305.37301 * 14 13 11 16 16 C 1.37882 * 120.84468 * 231.36839 * 15 14 13 17 17 N 1.31511 * 120.00368 * 349.10589 * 16 15 14 18 18 Si 1.86802 * 119.99786 * 169.11150 * 16 15 14 19 19 H 1.48492 * 109.47154 * 354.65676 * 18 16 15 20 20 H 1.48492 * 109.47267 * 114.65859 * 18 16 15 21 21 H 1.48509 * 109.46938 * 234.65652 * 18 16 15 22 22 C 1.51262 * 118.30725 * 51.34694 * 15 14 13 23 23 C 1.52966 * 109.40992 * 295.13878 * 11 10 9 24 24 H 1.09002 * 109.47018 * 270.02694 * 1 2 3 25 25 H 1.08997 * 109.46800 * 30.02326 * 1 2 3 26 26 H 1.08996 * 109.47534 * 150.02605 * 1 2 3 27 27 H 1.08001 * 126.66586 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.46957 * 300.00002 * 10 9 7 29 29 H 1.08998 * 109.47105 * 60.00713 * 10 9 7 30 30 H 1.09004 * 109.48199 * 303.68073 * 13 11 10 31 31 H 1.09000 * 109.48251 * 63.70281 * 13 11 10 32 32 H 1.09004 * 109.62173 * 65.08860 * 14 13 11 33 33 H 1.09000 * 109.62349 * 185.46198 * 14 13 11 34 34 H 0.96999 * 120.00533 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.62427 * 68.36179 * 22 15 14 36 36 H 1.09002 * 109.63220 * 188.74501 * 22 15 14 37 37 H 1.08997 * 109.48109 * 296.28087 * 23 11 10 38 38 H 1.09001 * 109.48095 * 56.32131 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0656 0.0000 4 8 3.5889 0.5774 0.0006 5 7 3.5992 -0.6316 0.0066 6 6 2.3838 -1.1208 0.0006 7 6 1.9996 -2.5526 0.0009 8 8 0.8268 -2.8664 0.0006 9 8 2.9515 -3.5050 0.0014 10 6 2.5022 -4.8858 0.0011 11 6 3.7162 -5.8171 0.0024 12 1 4.3617 -5.5696 0.8451 13 6 3.2450 -7.2665 0.1314 14 6 4.4631 -8.1914 0.2256 15 6 5.3582 -7.9305 -0.9656 16 6 5.7963 -8.9679 -1.7612 17 7 5.6202 -10.2126 -1.3750 18 14 6.6402 -8.6052 -3.3878 19 1 6.6004 -7.1443 -3.6512 20 1 8.0528 -9.0585 -3.3245 21 1 5.9380 -9.3246 -4.4810 22 6 5.7599 -6.5026 -1.2619 23 6 4.4938 -5.6403 -1.3029 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 2.0560 2.1073 -0.0004 28 1 1.9007 -5.0723 0.8908 29 1 1.9018 -5.0724 -0.8892 30 1 2.6375 -7.3727 1.0302 31 1 2.6512 -7.5348 -0.7425 32 1 5.0091 -7.9848 1.1461 33 1 4.1349 -9.2307 0.2200 34 1 5.9287 -10.9424 -1.9346 35 1 6.4260 -6.1398 -0.4791 36 1 6.2682 -6.4576 -2.2251 37 1 3.8701 -5.9480 -2.1421 38 1 4.7721 -4.5931 -1.4213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870362237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:11:27 Heat of formation + Delta-G solvation = -42.622256 kcal Electronic energy + Delta-G solvation = -21487.593052 eV Core-core repulsion = 18104.981898 eV Total energy + Delta-G solvation = -3382.611154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.44919 -40.32877 -37.48463 -36.11379 -35.03256 -32.84925 -32.48173 -29.86430 -29.25716 -28.55550 -26.07439 -24.44588 -22.02691 -21.79182 -21.17128 -20.88888 -19.24806 -18.44585 -18.13680 -17.23779 -16.39608 -16.24486 -15.91736 -14.61302 -14.45523 -13.87301 -13.75415 -13.63229 -13.51180 -13.06710 -12.77657 -12.71622 -12.59247 -12.05716 -11.82159 -11.68920 -11.21334 -10.94293 -10.84050 -10.80186 -10.65653 -10.47632 -10.27781 -9.99194 -9.82494 -9.81226 -9.30916 -8.82983 -8.55712 -8.36275 -6.08655 -3.96611 0.77429 1.26152 2.35087 2.72207 2.83248 3.28374 3.38481 3.39721 3.69051 4.29801 4.41595 4.51924 4.69447 5.06657 5.13917 5.26106 5.28730 5.30646 5.34097 5.44408 5.64603 5.83661 5.96066 6.03636 6.27788 6.45493 6.55786 6.71117 6.79937 6.95886 7.04245 7.15094 7.24636 7.48052 7.52835 7.66984 7.77441 7.79748 7.85174 8.42841 8.99634 9.58168 11.01099 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.030288 B = 0.003670 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.232065 B = 7627.113231 C = 8145.419656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.148 4.148 3 C -0.069 4.069 4 O 0.136 5.864 5 N -0.300 5.300 6 C -0.017 4.017 7 C 0.546 3.454 8 O -0.492 6.492 9 O -0.333 6.333 10 C 0.071 3.929 11 C -0.072 4.072 12 H 0.071 0.929 13 C -0.102 4.102 14 C 0.013 3.987 15 C -0.487 4.487 16 C 0.075 3.925 17 N -0.889 5.889 18 Si 0.877 3.123 19 H -0.255 1.255 20 H -0.283 1.283 21 H -0.286 1.286 22 C -0.025 4.025 23 C -0.102 4.102 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.226 0.774 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.005 0.995 33 H 0.055 0.945 34 H 0.263 0.737 35 H 0.017 0.983 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 21.594 2.511 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.153 4.153 3 C -0.149 4.149 4 O 0.054 5.946 5 N 0.004 4.996 6 C -0.174 4.174 7 C 0.388 3.612 8 O -0.379 6.379 9 O -0.248 6.248 10 C -0.001 4.001 11 C -0.091 4.091 12 H 0.090 0.910 13 C -0.140 4.140 14 C -0.024 4.024 15 C -0.506 4.506 16 C -0.127 4.127 17 N -0.526 5.526 18 Si 0.705 3.295 19 H -0.180 1.180 20 H -0.210 1.210 21 H -0.213 1.213 22 C -0.063 4.063 23 C -0.140 4.140 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.243 0.757 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.239 20.556 2.468 22.283 hybrid contribution -0.506 0.213 -0.899 1.053 sum -8.745 20.769 1.570 22.590 Atomic orbital electron populations 1.20258 0.86308 1.04100 1.03421 1.21346 0.99172 0.89727 1.05031 1.25818 0.82314 1.01334 1.05438 1.84858 1.29511 1.15277 1.64927 1.74415 1.21206 0.91132 1.12894 1.22412 0.89934 0.94204 1.10826 1.19486 0.83950 0.84366 0.73390 1.90822 1.18929 1.82504 1.45630 1.86637 1.37964 1.17860 1.82348 1.23664 0.99296 0.75063 1.02115 1.21146 0.93892 0.93753 1.00292 0.91021 1.21657 1.00099 0.93197 0.99014 1.19334 0.91605 0.96191 0.95254 1.20054 1.29367 0.89926 1.11224 1.24849 0.95407 0.94652 0.97805 1.69898 1.46823 0.98584 1.37314 0.86769 0.79294 0.78966 0.84436 1.18031 1.20953 1.21271 1.19953 0.93331 0.95275 0.97713 1.21594 0.99049 0.98044 0.95318 0.90307 0.90667 0.89461 0.75731 0.91400 0.91083 0.94824 0.92889 0.97660 0.92661 0.92729 0.96460 0.94228 0.93279 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.15 -1.44 6.34 -104.11 -0.66 -2.10 16 3 C -0.07 -0.47 12.24 29.69 0.36 -0.11 16 4 O 0.14 1.37 11.18 17.23 0.19 1.56 16 5 N -0.30 -4.13 12.12 33.29 0.40 -3.73 16 6 C -0.02 -0.23 7.24 -82.54 -0.60 -0.83 16 7 C 0.55 8.79 7.99 34.85 0.28 9.07 16 8 O -0.49 -8.21 15.13 -19.19 -0.29 -8.50 16 9 O -0.33 -5.87 9.70 -40.35 -0.39 -6.26 16 10 C 0.07 1.24 4.84 37.16 0.18 1.42 16 11 C -0.07 -1.42 2.33 -90.66 -0.21 -1.64 16 12 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 13 C -0.10 -2.14 5.21 -26.63 -0.14 -2.27 16 14 C 0.01 0.34 5.92 -27.49 -0.16 0.18 16 15 C -0.49 -13.00 5.48 -98.93 -0.54 -13.54 16 16 C 0.08 2.08 5.44 -17.82 -0.10 1.99 16 17 N -0.89 -25.86 12.83 55.43 0.71 -25.15 16 18 Si 0.88 21.12 27.95 -169.99 -4.75 16.37 16 19 H -0.26 -5.91 5.57 56.52 0.32 -5.60 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.03 -0.61 5.66 -27.48 -0.16 -0.76 16 23 C -0.10 -2.17 5.15 -26.62 -0.14 -2.31 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.84 6.89 -51.93 -0.36 0.49 16 27 H 0.23 0.34 8.06 -52.49 -0.42 -0.09 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 33 H 0.05 1.50 7.20 -51.93 -0.37 1.13 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.04 0.95 4.35 -51.93 -0.23 0.72 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.77 7.72 -51.93 -0.40 0.37 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -31.27 316.48 -6.11 -37.38 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -5.23 Total: -5.25 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.52 Total: -11.20 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 1.11 Total: -28.88 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.49 Total: -13.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.75 Total: 16.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.27 -6.11 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870362237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.245 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds