Wall clock time and date at job start Fri Apr 10 2020 17:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00261 * 2 1 4 4 H 1.48498 * 109.46817 * 269.99945 * 3 2 1 5 5 H 1.48496 * 109.46950 * 29.99878 * 3 2 1 6 6 H 1.48497 * 109.47200 * 150.00454 * 3 2 1 7 7 C 1.37884 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99655 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47146 * 179.97438 * 9 7 2 11 11 C 1.35994 * 117.00278 * 179.97438 * 10 9 7 12 12 C 1.38698 * 119.98140 * 359.72689 * 11 10 9 13 13 C 1.38115 * 120.02022 * 179.76020 * 12 11 10 14 14 C 1.38860 * 119.97927 * 0.51390 * 13 12 11 15 15 N 1.39939 * 120.01702 * 179.76333 * 14 13 12 16 16 C 1.46497 * 120.00414 * 353.70670 * 15 14 13 17 17 C 1.53000 * 112.99394 * 295.11542 * 16 15 14 18 18 O 1.42894 * 109.47645 * 305.07390 * 17 16 15 19 19 C 1.54028 * 113.81734 * 163.29068 * 16 15 14 20 20 O 1.44573 * 85.38507 * 268.28840 * 19 16 15 21 21 C 1.44178 * 93.32518 * 335.80774 * 20 19 16 22 22 C 1.38864 * 119.96148 * 359.73910 * 14 13 12 23 23 C 1.38103 * 119.98119 * 0.02562 * 22 14 13 24 24 H 0.97001 * 119.99488 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47218 * 59.99868 * 9 7 2 26 26 H 1.09006 * 109.47073 * 299.99758 * 9 7 2 27 27 H 1.07997 * 119.99008 * 0.02562 * 12 11 10 28 28 H 1.08001 * 120.00995 * 180.25459 * 13 12 11 29 29 H 0.97007 * 119.99512 * 173.70575 * 15 14 13 30 30 H 1.09002 * 109.47427 * 65.07683 * 17 16 15 31 31 H 1.09004 * 109.47196 * 185.07262 * 17 16 15 32 32 H 0.96703 * 114.00463 * 180.02562 * 18 17 16 33 33 H 1.08998 * 113.87003 * 22.49653 * 19 16 15 34 34 H 1.09007 * 113.86150 * 154.20658 * 19 16 15 35 35 H 1.09001 * 113.86288 * 270.03859 * 21 20 19 36 36 H 1.09000 * 113.86768 * 138.33679 * 21 20 19 37 37 H 1.07998 * 120.00644 * 180.02562 * 22 14 13 38 38 H 1.08004 * 119.99377 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.6597 -4.8420 0.0011 12 6 0.2847 -5.0233 0.0073 13 6 -0.2442 -6.2992 0.0029 14 6 0.6013 -7.4007 0.0029 15 7 0.0664 -8.6938 0.0034 16 6 -1.3789 -8.8887 0.1430 17 6 -1.9156 -8.4293 1.5001 18 8 -1.1928 -9.0838 2.5446 19 6 -1.8606 -10.2910 -0.2742 20 8 -2.0579 -9.7065 -1.5817 21 6 -2.1949 -8.3708 -1.0564 22 6 1.9779 -7.2184 0.0020 23 6 2.5050 -5.9418 0.0015 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 -0.3728 -4.1665 0.0113 28 1 -1.3149 -6.4401 0.0036 29 1 0.6526 -9.4612 -0.0886 30 1 -1.7918 -7.3504 1.5935 31 1 -2.9733 -8.6816 1.5768 32 1 -1.4808 -8.8399 3.4349 33 1 -1.0814 -11.0525 -0.2425 34 1 -2.7843 -10.6030 0.2133 35 1 -3.2204 -8.0980 -0.8072 36 1 -1.6807 -7.6107 -1.6445 37 1 2.6362 -8.0745 0.0016 38 1 3.5756 -5.7998 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168181132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:34 Heat of formation + Delta-G solvation = -62.693249 kcal Electronic energy + Delta-G solvation = -21462.108387 eV Core-core repulsion = 18078.626889 eV Total energy + Delta-G solvation = -3383.481498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15196 -39.19407 -37.14714 -36.59939 -33.97431 -32.80080 -30.80099 -30.08784 -28.07002 -27.25961 -26.43123 -25.12454 -23.41113 -22.09817 -21.01619 -19.72272 -17.85542 -17.45828 -16.75861 -16.72929 -16.37848 -16.08221 -15.69510 -14.99221 -14.73536 -14.57816 -14.43303 -14.10732 -13.77078 -13.16619 -12.86523 -12.77334 -12.43981 -12.39832 -12.05937 -11.58905 -11.53445 -11.13138 -10.99015 -10.94530 -10.52946 -10.45058 -10.17743 -10.08656 -9.98695 -9.22022 -9.01974 -8.58381 -8.45548 -6.66068 -6.22198 -4.25078 1.77790 2.14268 3.17121 3.25651 3.30723 3.35891 3.42676 3.58146 4.21677 4.22827 4.37193 4.66580 4.78179 4.85375 4.92710 5.06091 5.15102 5.17967 5.22261 5.34882 5.38392 5.40821 5.67148 5.78215 5.82086 5.90287 6.00780 6.39133 6.58199 6.64587 6.83920 7.06874 7.14916 7.21362 7.37252 7.54777 7.71956 7.85016 8.01356 8.58921 8.90705 9.40178 10.89173 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.029892 B = 0.003434 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.465569 B = 8151.629699 C = 8401.057296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.060 3.940 3 Si 0.912 3.088 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.522 4.522 8 H 0.070 0.930 9 C 0.195 3.805 10 O -0.322 6.322 11 C 0.105 3.895 12 C -0.167 4.167 13 C -0.159 4.159 14 C 0.162 3.838 15 N -0.721 5.721 16 C 0.128 3.872 17 C 0.059 3.941 18 O -0.561 6.561 19 C 0.043 3.957 20 O -0.373 6.373 21 C 0.025 3.975 22 C -0.150 4.150 23 C -0.122 4.122 24 H 0.266 0.734 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.132 0.868 28 H 0.114 0.886 29 H 0.400 0.600 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.378 0.622 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 -19.201 2.444 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.560 4.560 8 H 0.088 0.912 9 C 0.122 3.878 10 O -0.236 6.236 11 C 0.057 3.943 12 C -0.186 4.186 13 C -0.181 4.181 14 C 0.063 3.937 15 N -0.354 5.354 16 C 0.038 3.962 17 C -0.021 4.021 18 O -0.366 6.366 19 C -0.034 4.034 20 O -0.292 6.292 21 C -0.053 4.053 22 C -0.172 4.172 23 C -0.142 4.142 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.150 0.850 28 H 0.132 0.868 29 H 0.235 0.765 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.225 0.775 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.514 -19.325 1.684 20.167 hybrid contribution -0.122 1.038 0.652 1.232 sum -5.636 -18.286 2.337 19.277 Atomic orbital electron populations 1.69953 1.06125 1.27485 1.49864 1.24933 0.95032 0.99501 0.94767 0.86262 0.79648 0.81828 0.78362 1.20314 1.20958 1.19500 1.21005 0.94272 0.88889 1.51842 0.91205 1.20553 0.88712 0.82001 0.96545 1.86109 1.38633 1.11658 1.87178 1.19065 0.91461 0.86530 0.97287 1.21241 0.94863 0.97567 1.04953 1.20444 0.98283 0.91228 1.08137 1.17479 0.92052 0.84300 0.99841 1.43762 1.03304 1.04875 1.83497 1.22942 0.84307 0.96026 0.92965 1.22768 0.94138 0.97530 0.87661 1.86478 1.63162 1.69740 1.17183 1.24247 1.00738 0.95338 0.83078 1.89797 1.93926 1.19984 1.25463 1.24563 0.99674 0.87424 0.93661 1.20232 0.92560 0.96547 1.07853 1.20176 0.99388 0.89908 1.04700 0.92425 0.96357 0.96384 0.85020 0.86769 0.76465 0.92113 0.92884 0.77523 0.88640 0.88957 0.89323 0.87662 0.86336 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -15.10 9.43 -34.44 -0.32 -15.42 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.26 4.49 36.01 0.16 5.42 16 10 O -0.32 -8.01 10.12 -19.72 -0.20 -8.21 16 11 C 0.10 2.19 6.69 -39.24 -0.26 1.93 16 12 C -0.17 -3.20 9.03 -39.46 -0.36 -3.56 16 13 C -0.16 -2.51 7.44 -39.40 -0.29 -2.81 16 14 C 0.16 2.39 6.39 -83.69 -0.53 1.85 16 15 N -0.72 -8.66 5.31 -52.07 -0.28 -8.93 16 16 C 0.13 1.31 0.75 -130.75 -0.10 1.22 16 17 C 0.06 0.55 6.15 37.16 0.23 0.78 16 18 O -0.56 -5.56 13.53 -35.23 -0.48 -6.04 16 19 C 0.04 0.39 8.55 37.64 0.32 0.71 16 20 O -0.37 -4.39 12.47 -35.23 -0.44 -4.83 16 21 C 0.03 0.26 7.14 37.64 0.27 0.53 16 22 C -0.15 -2.27 9.89 -39.40 -0.39 -2.66 16 23 C -0.12 -2.17 9.98 -39.46 -0.39 -2.56 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.02 0.51 7.67 -51.93 -0.40 0.12 16 26 H 0.02 0.51 7.65 -51.93 -0.40 0.11 16 27 H 0.13 2.65 6.29 -52.49 -0.33 2.32 16 28 H 0.11 1.54 4.57 -52.49 -0.24 1.30 16 29 H 0.40 4.30 8.68 -40.82 -0.35 3.95 16 30 H 0.06 0.65 6.01 -51.93 -0.31 0.34 16 31 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.38 2.27 9.12 45.56 0.42 2.69 16 33 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.09 0.63 8.06 -51.93 -0.42 0.22 16 35 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.11 1.25 6.90 -51.93 -0.36 0.89 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -32.69 318.42 -6.69 -39.39 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.04 Total: 5.74 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.77 Total: -12.99 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.46 Total: -34.23 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -1.12 Total: -19.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.69 -6.69 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168181132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.307 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds