Wall clock time and date at job start Fri Apr 10 2020 17:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47183 * 174.66121 * 3 2 1 5 5 H 1.48492 * 109.47160 * 294.66120 * 3 2 1 6 6 H 1.48501 * 109.46866 * 54.66048 * 3 2 1 7 7 C 1.37880 * 120.00436 * 179.97438 * 2 1 3 8 8 C 1.51271 * 120.84829 * 349.78431 * 7 2 1 9 9 C 1.53229 * 108.53605 * 231.32545 * 8 7 2 10 10 C 1.52964 * 109.40212 * 305.36664 * 9 8 7 11 11 H 1.09001 * 109.41235 * 303.49796 * 10 9 8 12 12 N 1.46496 * 109.41221 * 183.63511 * 10 9 8 13 13 C 1.34785 * 119.99684 * 155.00188 * 12 10 9 14 14 O 1.21691 * 119.99660 * 0.02562 * 13 12 10 15 15 C 1.46656 * 119.99942 * 179.97438 * 13 12 10 16 16 C 1.36545 * 125.98592 * 179.71752 * 15 13 12 17 17 C 1.40366 * 106.70553 * 179.85476 * 16 15 13 18 18 C 1.35132 * 107.11597 * 0.40896 * 17 16 15 19 19 C 1.50705 * 125.61855 * 179.71281 * 18 17 16 20 20 O 1.42896 * 109.46966 * 90.01290 * 19 18 17 21 21 O 1.33931 * 108.76799 * 359.74486 * 18 17 16 22 22 C 1.52963 * 109.81481 * 63.59916 * 10 9 8 23 23 C 1.51270 * 120.85262 * 169.49743 * 7 2 1 24 24 H 0.97000 * 120.00293 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.62298 * 351.03165 * 8 7 2 26 26 H 1.08998 * 109.63103 * 111.41262 * 8 7 2 27 27 H 1.08992 * 109.48835 * 65.35031 * 9 8 7 28 28 H 1.09002 * 109.47886 * 185.37928 * 9 8 7 29 29 H 0.96995 * 120.00636 * 335.00307 * 12 10 9 30 30 H 1.07999 * 126.64884 * 359.96164 * 16 15 13 31 31 H 1.08000 * 126.44440 * 180.15178 * 17 16 15 32 32 H 1.08998 * 109.47146 * 210.01541 * 19 18 17 33 33 H 1.08996 * 109.46530 * 330.01099 * 19 18 17 34 34 H 0.96703 * 113.99545 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.47940 * 56.38196 * 22 10 9 36 36 H 1.09000 * 109.48256 * 176.40850 * 22 10 9 37 37 H 1.08998 * 109.62316 * 248.39506 * 23 7 2 38 38 H 1.08995 * 109.62296 * 8.96214 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3495 0.1303 5 1 1.9907 2.3385 -1.2723 6 1 1.7952 2.4513 1.1421 7 6 2.0046 -1.1940 0.0005 8 6 1.2856 -2.5048 0.2315 9 6 2.0148 -3.2717 1.3396 10 6 3.4913 -3.4196 0.9683 11 1 3.5736 -3.9124 -0.0004 12 7 4.1704 -4.2270 1.9847 13 6 5.2877 -4.9105 1.6665 14 8 5.7324 -4.8565 0.5351 15 6 5.9679 -5.7183 2.6841 16 6 7.0987 -6.4602 2.4956 17 6 7.3969 -7.0615 3.7284 18 6 6.4420 -6.6726 4.6019 19 6 6.3573 -7.0826 6.0497 20 8 7.0799 -6.1471 6.8526 21 8 5.5828 -5.8633 3.9690 22 6 4.1481 -2.0402 0.8944 23 6 3.4983 -1.2274 -0.2362 24 1 -0.4850 0.8400 0.0004 25 1 0.2576 -2.3096 0.5369 26 1 1.2895 -3.0914 -0.6872 27 1 1.9291 -2.7238 2.2780 28 1 1.5676 -4.2592 1.4531 29 1 3.8162 -4.2697 2.8866 30 1 7.6566 -6.5629 1.5766 31 1 8.2302 -7.7156 3.9383 32 1 5.3132 -7.0993 6.3621 33 1 6.7890 -8.0759 6.1717 34 1 7.0679 -6.3488 7.7983 35 1 4.0119 -1.5214 1.8434 36 1 5.2131 -2.1549 0.6925 37 1 3.7063 -1.6993 -1.1965 38 1 3.8924 -0.2112 -0.2314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189158814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:50 Heat of formation + Delta-G solvation = -81.891847 kcal Electronic energy + Delta-G solvation = -21435.245320 eV Core-core repulsion = 18050.931309 eV Total energy + Delta-G solvation = -3384.314012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.83861 -39.39491 -37.27395 -36.75951 -33.89972 -33.18350 -31.74929 -30.89979 -29.66127 -27.71427 -26.21137 -23.00291 -21.85562 -21.57604 -21.35503 -20.06889 -19.59788 -18.14526 -18.07877 -16.35136 -16.15684 -15.88636 -15.70937 -15.05075 -14.48928 -14.26366 -14.18978 -13.39755 -13.27393 -13.12960 -13.10839 -12.71374 -12.33344 -12.18770 -12.13711 -11.69394 -11.01815 -10.82208 -10.79850 -10.65346 -10.25328 -10.18696 -10.03791 -9.94106 -9.41383 -9.09330 -8.92666 -8.75749 -8.43105 -8.30333 -6.11744 -4.00620 0.92528 2.10542 2.44708 3.27167 3.32007 3.37553 3.38777 3.42186 3.99536 4.39338 4.46510 4.66253 4.71628 4.83957 4.98382 5.16229 5.48231 5.61568 5.64272 5.75825 5.87043 6.16643 6.18448 6.40600 6.47680 6.67578 6.69119 6.74120 6.88718 6.94809 7.09234 7.13334 7.23558 7.45505 7.62117 7.69938 7.74645 7.85888 8.33672 8.37822 8.95445 9.54630 10.97711 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.003647 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.945205 B = 7675.657222 C = 7863.975233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.490 4.490 8 C 0.015 3.985 9 C -0.115 4.115 10 C 0.152 3.848 11 H 0.082 0.918 12 N -0.709 5.709 13 C 0.595 3.405 14 O -0.521 6.521 15 C -0.055 4.055 16 C -0.133 4.133 17 C -0.193 4.193 18 C 0.000 4.000 19 C 0.157 3.843 20 O -0.565 6.565 21 O -0.156 6.156 22 C -0.115 4.115 23 C -0.023 4.023 24 H 0.263 0.737 25 H 0.058 0.942 26 H 0.008 0.992 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.399 0.601 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.388 0.612 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.020 0.980 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.274 -14.371 12.832 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.706 3.294 4 H -0.180 1.180 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.508 4.508 8 C -0.023 4.023 9 C -0.153 4.153 10 C 0.050 3.950 11 H 0.100 0.900 12 N -0.358 5.358 13 C 0.379 3.621 14 O -0.399 6.399 15 C -0.108 4.108 16 C -0.153 4.153 17 C -0.212 4.212 18 C -0.052 4.052 19 C 0.079 3.921 20 O -0.372 6.372 21 O -0.051 6.051 22 C -0.154 4.154 23 C -0.061 4.061 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.233 0.767 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.237 0.763 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.223 -13.774 11.551 21.192 hybrid contribution 0.313 0.513 1.038 1.199 sum 11.535 -13.261 12.589 21.620 Atomic orbital electron populations 1.69890 1.06229 1.26889 1.49442 1.24840 0.94622 0.98614 0.94500 0.86753 0.81188 0.83628 0.77787 1.18005 1.20900 1.21243 1.20051 0.90843 0.91833 1.48113 1.19314 0.97365 0.93446 0.92173 1.21959 0.92721 0.98725 1.01937 1.21198 0.92439 0.90906 0.90446 0.89991 1.46411 1.26188 1.47671 1.15514 1.16598 0.80937 0.79006 0.85542 1.90880 1.65493 1.64378 1.19145 1.22493 0.99677 1.05743 0.82887 1.21955 0.96252 0.97441 0.99662 1.21603 1.01127 1.05658 0.92854 1.22257 0.91935 0.96203 0.94854 1.20322 0.97188 0.91596 0.82965 1.86579 1.75748 1.52562 1.22309 1.84011 1.46479 1.53252 1.21395 1.22010 0.97343 0.94944 1.01086 1.20009 0.95878 0.96466 0.93721 0.92661 0.92351 0.97389 0.92637 0.94443 0.76682 0.82011 0.82601 0.91333 0.89913 0.76336 0.92976 0.94431 0.96122 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 12.81 55.43 0.71 -24.66 16 2 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 3 Si 0.88 20.87 27.96 -169.99 -4.75 16.11 16 4 H -0.26 -5.85 5.56 56.52 0.31 -5.53 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.49 -12.86 5.47 -98.92 -0.54 -13.40 16 8 C 0.01 0.37 5.93 -27.48 -0.16 0.20 16 9 C -0.11 -2.35 5.40 -26.63 -0.14 -2.50 16 10 C 0.15 3.05 2.35 -67.97 -0.16 2.89 16 11 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 12 N -0.71 -12.17 5.07 -55.16 -0.28 -12.45 16 13 C 0.59 10.52 7.74 -12.86 -0.10 10.42 16 14 O -0.52 -10.76 16.53 5.20 0.09 -10.67 16 15 C -0.06 -0.83 7.13 -36.80 -0.26 -1.10 16 16 C -0.13 -1.74 10.62 -39.39 -0.42 -2.16 16 17 C -0.19 -2.09 10.77 -39.89 -0.43 -2.52 16 18 C 0.00 0.00 6.94 -35.41 -0.25 -0.25 16 19 C 0.16 1.10 7.57 36.01 0.27 1.38 16 20 O -0.56 -4.50 13.64 -35.23 -0.48 -4.98 16 21 O -0.16 -2.14 10.40 4.98 0.05 -2.09 16 22 C -0.11 -2.47 5.51 -26.41 -0.15 -2.62 16 23 C -0.02 -0.54 5.68 -27.26 -0.15 -0.70 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.06 1.55 7.18 -51.93 -0.37 1.18 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.40 5.94 8.36 -40.82 -0.34 5.60 16 30 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.39 0.92 9.12 45.56 0.42 1.34 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.04 1.02 4.35 -51.93 -0.23 0.80 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -32.57 318.89 -6.82 -39.38 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.37 Total: 2.90 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.59 Total: -8.35 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.43 Total: -37.11 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.34 Total: -17.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.75 Total: 16.11 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.57 -6.82 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189158814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.507 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds