Wall clock time and date at job start Fri Apr 10 2020 17:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37591 * 120.01821 * 2 1 4 4 C 1.39137 * 120.24283 * 179.97438 * 3 2 1 5 5 O 1.35709 * 119.86311 * 180.02562 * 4 3 2 6 6 C 1.38731 * 120.27203 * 0.02562 * 4 3 2 7 7 C 1.38399 * 120.03095 * 359.75769 * 6 4 3 8 8 O 1.35659 * 120.11957 * 180.25452 * 7 6 4 9 9 C 1.39815 * 120.01974 * 179.97438 * 2 1 3 10 10 C 1.47306 * 120.13363 * 0.02562 * 9 2 1 11 11 O 1.21625 * 119.99928 * 90.00090 * 10 9 2 12 12 N 1.34771 * 119.99913 * 269.99993 * 10 9 2 13 13 C 1.46506 * 120.00088 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47320 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47099 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46885 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00463 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99855 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00236 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99947 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47019 * 89.99862 * 20 18 16 22 22 H 1.48497 * 109.47222 * 209.99641 * 20 18 16 23 23 H 1.48497 * 109.46819 * 329.99921 * 20 18 16 24 24 H 1.08998 * 109.46798 * 270.01879 * 1 2 3 25 25 H 1.09000 * 109.47542 * 30.01686 * 1 2 3 26 26 H 1.08994 * 109.47320 * 150.02015 * 1 2 3 27 27 H 1.08003 * 119.87749 * 359.97438 * 3 2 1 28 28 H 0.96700 * 114.00242 * 90.00149 * 5 4 3 29 29 H 1.08001 * 119.98414 * 179.97438 * 6 4 3 30 30 H 0.96691 * 114.00256 * 270.23805 * 8 7 6 31 31 H 0.96995 * 120.00304 * 0.02562 * 12 10 9 32 32 H 1.09001 * 109.46578 * 299.99945 * 13 12 10 33 33 H 1.08999 * 109.46905 * 59.99328 * 13 12 10 34 34 H 1.09004 * 109.46895 * 299.99925 * 14 13 12 35 35 H 1.08997 * 109.47106 * 59.99439 * 14 13 12 36 36 H 1.09001 * 109.46761 * 299.99785 * 15 14 13 37 37 H 1.08997 * 109.47528 * 59.99785 * 15 14 13 38 38 H 0.96999 * 120.00320 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1914 0.0000 4 6 3.5867 1.1968 0.0005 5 8 4.2578 2.3763 0.0011 6 6 4.2907 0.0014 0.0005 7 6 3.6098 -1.2035 0.0051 8 8 4.2965 -2.3734 0.0103 9 6 2.2065 -1.2106 0.0005 10 6 1.4734 -2.4883 0.0005 11 8 1.1711 -3.0160 -1.0528 12 7 1.1376 -3.0725 1.1677 13 6 0.4089 -4.3435 1.1678 14 6 0.1539 -4.7851 2.6102 15 6 -0.6076 -6.1121 2.6102 16 6 -0.8582 -6.5474 4.0310 17 1 -0.5090 -5.9387 4.8520 18 6 -1.5335 -7.7229 4.2830 19 7 -1.7518 -8.1030 5.5229 20 14 -2.1383 -8.7754 2.8632 21 1 -1.0845 -9.7517 2.4868 22 1 -3.3645 -9.5048 3.2749 23 1 -2.4465 -7.9064 1.6991 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6536 2.1257 -0.0004 28 1 4.4520 2.7180 0.8846 29 1 5.3707 0.0111 0.0005 30 1 4.4992 -2.7144 -0.8715 31 1 1.3783 -2.6515 2.0077 32 1 -0.5436 -4.2161 0.6533 33 1 1.0006 -5.1014 0.6544 34 1 1.1062 -4.9123 3.1250 35 1 -0.4379 -4.0270 3.1231 36 1 -1.5599 -5.9845 2.0955 37 1 -0.0162 -6.8705 2.0972 38 1 -2.2265 -8.9301 5.7001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193939078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:53 Heat of formation + Delta-G solvation = -143.017565 kcal Electronic energy + Delta-G solvation = -20956.010213 eV Core-core repulsion = 17569.045591 eV Total energy + Delta-G solvation = -3386.964622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72691 -40.15218 -38.80916 -37.27421 -36.95086 -35.15826 -33.38135 -32.92360 -30.99248 -28.92196 -28.14849 -25.23593 -23.89319 -22.92943 -22.27089 -21.42593 -19.59602 -19.11414 -18.63489 -18.33887 -17.81896 -17.19995 -16.49298 -16.32186 -16.09384 -15.82006 -15.44416 -15.08081 -14.79479 -14.48513 -14.44006 -14.03032 -13.83410 -13.74539 -13.50012 -13.08997 -12.75849 -12.71344 -12.48668 -12.03041 -11.90487 -11.78822 -11.70320 -11.61192 -11.34537 -11.02150 -10.76630 -10.17590 -9.79241 -9.69861 -8.29709 -6.33797 -0.17995 0.10250 1.37122 1.38466 1.43116 1.50422 2.06922 2.35947 2.36309 2.86396 3.06077 3.32378 3.62733 3.71492 4.05583 4.06924 4.16028 4.21209 4.32543 4.47983 4.58184 4.66729 4.72954 4.86001 4.86327 5.00444 5.02524 5.10893 5.21658 5.29076 5.32801 5.46445 5.53961 5.54376 5.64372 6.26968 6.42744 6.58968 6.74268 6.79477 7.07771 7.31071 8.86834 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.031439 B = 0.003101 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.406036 B = 9028.423094 C = 9090.224163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.019 4.019 3 C -0.155 4.155 4 C 0.152 3.848 5 O -0.501 6.501 6 C -0.185 4.185 7 C 0.157 3.843 8 O -0.504 6.504 9 C -0.188 4.188 10 C 0.574 3.426 11 O -0.580 6.580 12 N -0.705 5.705 13 C 0.126 3.874 14 C -0.100 4.100 15 C -0.011 4.011 16 C -0.531 4.531 17 H 0.037 0.963 18 C 0.005 3.995 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.246 1.246 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.162 0.838 28 H 0.419 0.581 29 H 0.154 0.846 30 H 0.412 0.588 31 H 0.412 0.588 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.183 22.499 -12.528 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.020 4.020 3 C -0.173 4.173 4 C 0.107 3.893 5 O -0.316 6.316 6 C -0.204 4.204 7 C 0.111 3.889 8 O -0.318 6.318 9 C -0.191 4.191 10 C 0.361 3.639 11 O -0.461 6.461 12 N -0.355 5.355 13 C 0.002 3.998 14 C -0.138 4.138 15 C -0.049 4.049 16 C -0.569 4.569 17 H 0.055 0.945 18 C -0.192 4.192 19 N -0.592 5.592 20 Si 0.771 3.229 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.170 1.170 24 H 0.110 0.890 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.179 0.821 28 H 0.280 0.720 29 H 0.172 0.828 30 H 0.272 0.728 31 H 0.248 0.752 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.826 21.976 -13.147 27.803 hybrid contribution -0.078 -0.872 0.346 0.942 sum 10.747 21.104 -12.801 26.921 Atomic orbital electron populations 1.20971 0.89312 1.03784 1.04018 1.19804 0.96949 0.90509 0.94757 1.21449 0.93449 0.98585 1.03830 1.18378 0.89758 0.85213 0.95928 1.84707 1.76431 1.34447 1.36000 1.21704 1.02059 0.90626 1.05984 1.18229 0.87506 0.86219 0.96968 1.84694 1.75159 1.36377 1.35548 1.20195 0.93886 0.93417 1.11640 1.18263 0.77855 0.84313 0.83513 1.90788 1.56618 1.66065 1.32582 1.46034 1.56939 1.23721 1.08763 1.21378 0.95988 0.84481 0.97903 1.21479 1.00609 0.97837 0.93863 1.19458 0.96101 0.94295 0.95047 1.21462 1.35907 1.06752 0.92808 0.94510 1.25990 0.95806 0.99122 0.98299 1.70055 1.43403 1.24411 1.21298 0.85691 0.78130 0.79021 0.80028 1.19293 1.20998 1.16987 0.88973 0.88267 0.93165 0.82066 0.72011 0.82819 0.72828 0.75213 0.91852 0.92278 0.92031 0.91572 0.95856 0.96232 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 9.62 71.24 0.68 -1.42 16 2 C -0.02 -0.37 5.91 -19.64 -0.12 -0.48 16 3 C -0.15 -2.26 9.61 22.33 0.21 -2.05 16 4 C 0.15 2.23 6.70 22.60 0.15 2.38 16 5 O -0.50 -5.42 13.48 -90.29 -1.22 -6.63 16 6 C -0.18 -3.08 9.91 22.43 0.22 -2.85 16 7 C 0.16 3.32 6.71 22.82 0.15 3.47 16 8 O -0.50 -10.71 12.95 -89.75 -1.16 -11.87 16 9 C -0.19 -4.45 5.64 -20.00 -0.11 -4.56 16 10 C 0.57 16.96 5.23 86.63 0.45 17.42 16 11 O -0.58 -21.45 17.10 -4.11 -0.07 -21.52 16 12 N -0.70 -19.74 5.55 -466.48 -2.59 -22.33 16 13 C 0.13 4.09 5.67 86.38 0.49 4.58 16 14 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 15 C -0.01 -0.51 4.04 29.85 0.12 -0.38 16 16 C -0.53 -30.30 9.66 25.60 0.25 -30.05 16 17 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 18 C 0.00 0.27 5.47 84.66 0.46 0.73 16 19 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 20 Si 0.95 44.39 27.47 68.60 1.88 46.28 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.10 1.19 8.08 -2.39 -0.02 1.17 16 26 H 0.05 1.12 7.08 -2.39 -0.02 1.10 16 27 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 28 H 0.42 0.34 9.06 -74.06 -0.67 -0.33 16 29 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.41 5.85 9.06 -74.06 -0.67 5.17 16 31 H 0.41 9.82 8.46 -92.71 -0.78 9.04 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 37 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 38 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -76.55 330.34 -0.79 -77.34 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -1.07 Total: 14.77 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 3.13 Total: -16.73 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -2.29 Total: -81.64 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -2.45 Total: -40.03 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Total: -76.55 -0.79 -77.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193939078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.674 kcal (2) G-P(sol) polarization free energy of solvation -76.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds