Wall clock time and date at job start Fri Apr 10 2020 17:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38695 * 120.00387 * 2 1 4 4 O 1.35892 * 119.99772 * 359.97438 * 3 2 1 5 5 C 1.38654 * 120.00318 * 179.97438 * 3 2 1 6 6 C 1.38697 * 120.00027 * 0.02562 * 5 3 2 7 7 O 1.35892 * 120.00220 * 179.97438 * 6 5 3 8 8 C 1.38661 * 119.99816 * 359.72081 * 6 5 3 9 9 C 1.38656 * 119.99743 * 179.97438 * 2 1 3 10 10 O 1.35899 * 120.00234 * 0.02562 * 9 2 1 11 11 C 1.42895 * 116.99929 * 186.08976 * 10 9 2 12 12 C 1.53510 * 114.16957 * 156.75275 * 11 10 9 13 13 N 1.47475 * 87.93261 * 87.81226 * 12 11 10 14 14 C 1.46906 * 111.00086 * 138.70671 * 13 12 11 15 15 C 1.50704 * 109.47107 * 169.99937 * 14 13 12 16 16 H 1.07994 * 119.99969 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99712 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00272 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99775 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47147 * 269.99518 * 19 17 15 21 21 H 1.48497 * 109.47568 * 29.99692 * 19 17 15 22 22 H 1.48496 * 109.47400 * 149.99982 * 19 17 15 23 23 C 1.47469 * 87.83982 * 27.01204 * 13 12 11 24 24 H 1.08995 * 109.46815 * 270.02464 * 1 2 3 25 25 H 1.09002 * 109.46508 * 30.01839 * 1 2 3 26 26 H 1.08995 * 109.47128 * 150.02039 * 1 2 3 27 27 H 0.96708 * 113.99578 * 90.00044 * 4 3 2 28 28 H 1.08002 * 120.00049 * 179.97438 * 5 3 2 29 29 H 0.96697 * 114.00463 * 89.99763 * 7 6 5 30 30 H 1.08003 * 120.00154 * 180.27135 * 8 6 5 31 31 H 1.08997 * 113.25844 * 23.80130 * 11 10 9 32 32 H 1.09008 * 113.47456 * 333.04611 * 12 11 10 33 33 H 1.09000 * 113.53191 * 202.58843 * 12 11 10 34 34 H 1.09003 * 109.47232 * 49.99899 * 14 13 12 35 35 H 1.08997 * 109.47139 * 290.00098 * 14 13 12 36 36 H 0.96996 * 120.00646 * 179.97438 * 18 17 15 37 37 H 1.08997 * 113.47824 * 87.75532 * 23 13 12 38 38 H 1.08999 * 113.48211 * 218.22662 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2006 1.2011 0.0000 4 8 1.5212 2.3780 -0.0005 5 6 3.5871 1.2011 0.0005 6 6 4.2806 -0.0001 0.0005 7 8 5.6395 -0.0001 0.0005 8 6 3.5872 -1.2009 0.0059 9 6 2.2002 -1.2008 0.0005 10 8 1.5208 -2.3777 0.0005 11 6 2.2927 -3.5725 0.1362 12 6 1.5050 -4.7711 0.6832 13 7 1.1246 -5.0872 -0.7061 14 6 1.1855 -6.5341 -0.9525 15 6 0.5618 -6.8428 -2.2892 16 1 0.1600 -6.0441 -2.8949 17 6 0.5032 -8.1450 -2.7383 18 7 0.9920 -9.1177 -2.0005 19 14 -0.2693 -8.5275 -4.3955 20 1 -1.7208 -8.7859 -4.2173 21 1 -0.0807 -7.3715 -5.3083 22 1 0.3793 -9.7295 -4.9785 23 6 2.3692 -4.4247 -1.1385 24 1 -0.3633 0.0004 1.0276 25 1 -0.3632 0.8899 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.3242 2.7188 0.8828 28 1 4.1271 2.1364 0.0001 29 1 6.0329 -0.0001 0.8839 30 1 4.1272 -2.1362 0.0103 31 1 3.2543 -3.4107 0.6232 32 1 0.6603 -4.4858 1.3105 33 1 2.1347 -5.5317 1.1448 34 1 0.6413 -7.0596 -0.1676 35 1 2.2259 -6.8591 -0.9533 36 1 0.9505 -10.0339 -2.3162 37 1 3.2304 -5.0923 -1.1635 38 1 2.2571 -3.8457 -2.0552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228487928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:00 Heat of formation + Delta-G solvation = -52.526568 kcal Electronic energy + Delta-G solvation = -21351.356941 eV Core-core repulsion = 17968.316303 eV Total energy + Delta-G solvation = -3383.040638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83999 -39.63251 -38.08837 -37.61027 -34.99810 -32.88055 -31.90106 -29.65210 -29.20321 -26.27608 -25.63913 -25.31267 -23.07708 -22.00847 -21.41331 -20.01329 -18.93967 -17.36896 -17.01844 -16.80081 -16.33611 -15.71197 -15.51280 -15.38104 -14.88413 -14.48305 -14.21060 -13.78625 -13.52053 -13.37923 -13.10329 -12.89591 -12.21585 -12.07145 -11.97515 -11.67561 -11.40242 -11.07163 -11.01899 -10.94056 -10.86074 -10.51281 -10.37415 -10.08111 -9.70936 -9.29598 -8.67500 -8.45145 -8.17760 -7.90384 -6.05649 -4.06668 0.94105 1.16537 2.98004 3.31010 3.32276 3.37824 3.42980 3.85848 4.19041 4.41348 4.63157 4.72423 4.79900 4.84492 4.92144 5.13474 5.21011 5.29879 5.48434 5.62428 5.70246 5.75445 5.81981 5.98945 6.00286 6.09184 6.13444 6.16582 6.23848 6.32481 6.45716 6.56553 7.09662 7.31274 7.38741 7.52441 7.60714 7.82608 8.06259 8.42158 9.01198 9.57783 11.05502 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.003538 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.997143 B = 7912.514759 C = 8290.172886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.153 4.153 3 C 0.155 3.845 4 O -0.490 6.490 5 C -0.211 4.211 6 C 0.154 3.846 7 O -0.496 6.496 8 C -0.243 4.243 9 C 0.170 3.830 10 O -0.267 6.267 11 C 0.042 3.958 12 C 0.001 3.999 13 N -0.455 5.455 14 C 0.156 3.844 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.054 3.946 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.273 1.273 22 H -0.287 1.287 23 C -0.005 4.005 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.391 0.609 28 H 0.133 0.867 29 H 0.391 0.609 30 H 0.141 0.859 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.004 0.996 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 19.777 9.895 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.155 4.155 3 C 0.110 3.890 4 O -0.300 6.300 5 C -0.231 4.231 6 C 0.109 3.891 7 O -0.306 6.306 8 C -0.262 4.262 9 C 0.123 3.877 10 O -0.178 6.178 11 C -0.015 4.015 12 C -0.128 4.128 13 N -0.178 5.178 14 C 0.030 3.970 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.198 1.198 22 H -0.213 1.213 23 C -0.135 4.135 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.248 0.752 28 H 0.151 0.849 29 H 0.248 0.752 30 H 0.158 0.842 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.230 19.635 8.369 21.976 hybrid contribution 0.775 -0.816 0.374 1.186 sum 6.005 18.819 8.743 21.602 Atomic orbital electron populations 1.20507 0.89642 1.03587 1.02197 1.19519 0.97536 0.89752 1.08661 1.17628 0.88819 0.84417 0.98166 1.84795 1.76326 1.35474 1.33451 1.21442 0.93613 0.98485 1.09527 1.17840 0.82664 0.91145 0.97408 1.84824 1.15824 1.96452 1.33519 1.21565 0.93555 0.99444 1.11667 1.18472 0.89590 0.86269 0.93382 1.86199 1.34444 1.11273 1.85931 1.23774 0.94669 0.83198 0.99843 1.24001 0.99192 0.93540 0.96069 1.69099 1.29791 1.15478 1.03465 1.20314 0.96341 0.82198 0.98180 1.21095 1.37941 0.92649 1.02608 0.91798 1.25000 0.95697 0.96212 0.97785 1.69945 1.46390 0.99964 1.37795 0.86463 0.79342 0.77754 0.83686 1.20564 1.19786 1.21281 1.24248 0.94939 0.96632 0.97681 0.91645 0.91217 0.90387 0.75247 0.84911 0.75231 0.84161 0.89568 0.89646 0.90355 0.95139 0.97810 0.92894 0.90481 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.57 36.01 0.34 -0.87 16 2 C -0.15 -1.98 5.91 -104.30 -0.62 -2.60 16 3 C 0.15 1.77 6.67 -39.26 -0.26 1.51 16 4 O -0.49 -4.63 12.54 -19.40 -0.24 -4.87 16 5 C -0.21 -2.33 9.92 -39.26 -0.39 -2.72 16 6 C 0.15 1.78 6.70 -39.26 -0.26 1.52 16 7 O -0.50 -4.93 13.50 -19.40 -0.26 -5.19 16 8 C -0.24 -3.09 8.96 -39.25 -0.35 -3.44 16 9 C 0.17 2.40 6.65 -39.26 -0.26 2.13 16 10 O -0.27 -4.28 9.23 -19.42 -0.18 -4.46 16 11 C 0.04 0.65 4.05 -26.20 -0.11 0.54 16 12 C 0.00 0.02 7.52 -7.56 -0.06 -0.03 16 13 N -0.46 -9.98 6.32 -246.13 -1.55 -11.54 16 14 C 0.16 4.05 4.57 -4.97 -0.02 4.03 16 15 C -0.50 -14.54 9.39 -34.44 -0.32 -14.86 16 16 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 19 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.01 -0.10 7.56 -7.55 -0.06 -0.16 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 26 H 0.08 1.07 7.52 -51.93 -0.39 0.68 16 27 H 0.39 1.68 9.06 45.56 0.41 2.09 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.39 1.80 9.06 45.56 0.41 2.21 16 30 H 0.14 1.67 5.88 -52.48 -0.31 1.36 16 31 H 0.09 1.08 5.90 -51.93 -0.31 0.77 16 32 H 0.09 1.41 8.14 -51.92 -0.42 0.98 16 33 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 34 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.00 0.11 7.30 -51.93 -0.38 -0.27 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.08 1.39 7.42 -51.93 -0.39 1.01 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -34.15 322.93 -7.52 -41.67 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.40 Total: 2.12 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -2.46 Total: -13.50 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.82 Total: -37.64 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.68 Total: -14.52 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.15 -7.52 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228487928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.858 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds