Wall clock time and date at job start Fri Apr 10 2020 17:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38695 * 120.00387 * 2 1 4 4 O 1.35892 * 119.99772 * 359.97438 * 3 2 1 5 5 C 1.38654 * 120.00318 * 179.97438 * 3 2 1 6 6 C 1.38697 * 120.00027 * 0.02562 * 5 3 2 7 7 O 1.35892 * 120.00220 * 179.97438 * 6 5 3 8 8 C 1.38661 * 119.99816 * 359.72081 * 6 5 3 9 9 C 1.38656 * 119.99743 * 179.97438 * 2 1 3 10 10 O 1.35899 * 120.00234 * 0.02562 * 9 2 1 11 11 C 1.42895 * 116.99929 * 186.08976 * 10 9 2 12 12 C 1.53510 * 114.16957 * 156.75275 * 11 10 9 13 13 N 1.47475 * 87.93261 * 87.81226 * 12 11 10 14 14 C 1.46906 * 111.00086 * 138.70671 * 13 12 11 15 15 C 1.50704 * 109.47107 * 169.99937 * 14 13 12 16 16 H 1.07994 * 119.99969 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99712 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00272 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99775 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47147 * 269.99518 * 19 17 15 21 21 H 1.48497 * 109.47568 * 29.99692 * 19 17 15 22 22 H 1.48496 * 109.47400 * 149.99982 * 19 17 15 23 23 C 1.47469 * 87.83982 * 27.01204 * 13 12 11 24 24 H 1.08995 * 109.46815 * 270.02464 * 1 2 3 25 25 H 1.09002 * 109.46508 * 30.01839 * 1 2 3 26 26 H 1.08995 * 109.47128 * 150.02039 * 1 2 3 27 27 H 0.96708 * 113.99578 * 90.00044 * 4 3 2 28 28 H 1.08002 * 120.00049 * 179.97438 * 5 3 2 29 29 H 0.96697 * 114.00463 * 89.99763 * 7 6 5 30 30 H 1.08003 * 120.00154 * 180.27135 * 8 6 5 31 31 H 1.08997 * 113.25844 * 23.80130 * 11 10 9 32 32 H 1.09008 * 113.47456 * 333.04611 * 12 11 10 33 33 H 1.09000 * 113.53191 * 202.58843 * 12 11 10 34 34 H 1.09003 * 109.47232 * 49.99899 * 14 13 12 35 35 H 1.08997 * 109.47139 * 290.00098 * 14 13 12 36 36 H 0.96996 * 120.00646 * 179.97438 * 18 17 15 37 37 H 1.08997 * 113.47824 * 87.75532 * 23 13 12 38 38 H 1.08999 * 113.48211 * 218.22662 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2006 1.2011 0.0000 4 8 1.5212 2.3780 -0.0005 5 6 3.5871 1.2011 0.0005 6 6 4.2806 -0.0001 0.0005 7 8 5.6395 -0.0001 0.0005 8 6 3.5872 -1.2009 0.0059 9 6 2.2002 -1.2008 0.0005 10 8 1.5208 -2.3777 0.0005 11 6 2.2927 -3.5725 0.1362 12 6 1.5050 -4.7711 0.6832 13 7 1.1246 -5.0872 -0.7061 14 6 1.1855 -6.5341 -0.9525 15 6 0.5618 -6.8428 -2.2892 16 1 0.1600 -6.0441 -2.8949 17 6 0.5032 -8.1450 -2.7383 18 7 0.9920 -9.1177 -2.0005 19 14 -0.2693 -8.5275 -4.3955 20 1 -1.7208 -8.7859 -4.2173 21 1 -0.0807 -7.3715 -5.3083 22 1 0.3793 -9.7295 -4.9785 23 6 2.3692 -4.4247 -1.1385 24 1 -0.3633 0.0004 1.0276 25 1 -0.3632 0.8899 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.3242 2.7188 0.8828 28 1 4.1271 2.1364 0.0001 29 1 6.0329 -0.0001 0.8839 30 1 4.1272 -2.1362 0.0103 31 1 3.2543 -3.4107 0.6232 32 1 0.6603 -4.4858 1.3105 33 1 2.1347 -5.5317 1.1448 34 1 0.6413 -7.0596 -0.1676 35 1 2.2259 -6.8591 -0.9533 36 1 0.9505 -10.0339 -2.3162 37 1 3.2304 -5.0923 -1.1635 38 1 2.2571 -3.8457 -2.0552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228487928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:08:59 Heat of formation + Delta-G solvation = -81.400294 kcal Electronic energy + Delta-G solvation = -21352.608999 eV Core-core repulsion = 17968.316303 eV Total energy + Delta-G solvation = -3384.292696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.93374 -40.81191 -38.85604 -38.79203 -35.95432 -34.99163 -32.83130 -31.20255 -30.38996 -27.52921 -27.08279 -26.83254 -24.38675 -23.31323 -22.64797 -21.14505 -19.98692 -18.63623 -18.17281 -17.95444 -17.77468 -16.96658 -16.65278 -16.54660 -16.19955 -16.06133 -15.27448 -15.13287 -15.01604 -14.58860 -14.05763 -14.03377 -13.90409 -13.50050 -13.30437 -12.92762 -12.90011 -12.56075 -12.40250 -12.27157 -12.11697 -11.84528 -11.71112 -11.51487 -11.40059 -11.25421 -10.63813 -9.62721 -9.55401 -9.15235 -8.25561 -6.35355 0.07485 0.25392 1.37963 1.39194 1.50864 1.91407 2.37372 2.41992 3.03811 3.06577 3.26016 3.28943 3.48140 3.73581 3.92889 3.97842 4.08457 4.19375 4.40152 4.41889 4.57537 4.59271 4.66782 4.75681 4.80310 4.81665 4.90663 5.01827 5.12648 5.24598 5.28485 5.39043 5.54907 5.58316 5.75398 6.04701 6.34261 6.43692 6.78079 6.78349 6.85874 7.34185 8.85360 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.003538 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.997143 B = 7912.514759 C = 8290.172886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.171 4.171 3 C 0.163 3.837 4 O -0.495 6.495 5 C -0.210 4.210 6 C 0.159 3.841 7 O -0.503 6.503 8 C -0.252 4.252 9 C 0.147 3.853 10 O -0.287 6.287 11 C 0.069 3.931 12 C 0.001 3.999 13 N -0.485 5.485 14 C 0.171 3.829 15 C -0.529 4.529 16 H 0.052 0.948 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.269 1.269 22 H -0.277 1.277 23 C -0.010 4.010 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.415 0.585 28 H 0.152 0.848 29 H 0.415 0.585 30 H 0.146 0.854 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.005 0.995 35 H -0.011 1.011 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.897 21.534 10.096 24.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.172 4.172 3 C 0.118 3.882 4 O -0.309 6.309 5 C -0.229 4.229 6 C 0.114 3.886 7 O -0.317 6.317 8 C -0.271 4.271 9 C 0.101 3.899 10 O -0.200 6.200 11 C 0.012 3.988 12 C -0.128 4.128 13 N -0.208 5.208 14 C 0.044 3.956 15 C -0.567 4.567 16 H 0.070 0.930 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.202 1.202 23 C -0.140 4.140 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.275 0.725 28 H 0.170 0.830 29 H 0.276 0.724 30 H 0.163 0.837 31 H 0.141 0.859 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.024 0.976 35 H 0.006 0.994 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.012 21.426 8.614 23.863 hybrid contribution 0.584 -1.212 0.366 1.394 sum 6.596 20.214 8.981 23.082 Atomic orbital electron populations 1.20450 0.89443 1.02636 1.02865 1.19730 0.97970 0.90111 1.09420 1.17630 0.89072 0.84469 0.97059 1.84739 1.76067 1.34472 1.35626 1.21662 0.93514 0.99104 1.08605 1.17874 0.83340 0.90897 0.96483 1.84769 1.14879 1.96340 1.35757 1.21640 0.93046 1.00285 1.12110 1.18669 0.90326 0.85767 0.95096 1.86164 1.35297 1.11952 1.86581 1.23509 0.95625 0.82603 0.97054 1.24068 1.00063 0.94781 0.93840 1.68997 1.32205 1.12532 1.07075 1.19978 0.94528 0.84834 0.96223 1.21404 1.38596 0.92833 1.03907 0.92951 1.25869 0.95960 0.95922 1.01602 1.70045 1.47128 1.00413 1.39553 0.85408 0.78634 0.77762 0.78980 1.19747 1.19393 1.20187 1.24280 0.93656 0.97077 0.98979 0.90222 0.90418 0.92929 0.72464 0.83047 0.72421 0.83690 0.85878 0.89077 0.88998 0.97641 0.99369 0.92487 0.90061 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 9.57 71.24 0.68 -1.57 16 2 C -0.17 -4.23 5.91 -19.65 -0.12 -4.34 16 3 C 0.16 3.36 6.67 22.48 0.15 3.51 16 4 O -0.50 -8.02 12.54 -92.33 -1.16 -9.18 16 5 C -0.21 -4.04 9.92 22.48 0.22 -3.82 16 6 C 0.16 3.29 6.70 22.48 0.15 3.44 16 7 O -0.50 -8.57 13.50 -92.33 -1.25 -9.82 16 8 C -0.25 -5.96 8.96 22.48 0.20 -5.76 16 9 C 0.15 4.02 6.65 22.48 0.15 4.17 16 10 O -0.29 -9.13 9.23 -92.41 -0.85 -9.99 16 11 C 0.07 2.06 4.05 30.94 0.13 2.19 16 12 C 0.00 0.05 7.52 83.57 0.63 0.68 16 13 N -0.49 -21.81 6.32 -933.02 -5.89 -27.70 16 14 C 0.17 9.22 4.57 85.56 0.39 9.61 16 15 C -0.53 -31.32 9.39 25.60 0.24 -31.08 16 16 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 17 C 0.00 0.28 5.46 84.65 0.46 0.74 16 18 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 19 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 23 C -0.01 -0.39 7.56 83.58 0.63 0.24 16 24 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 1.62 7.53 -2.39 -0.02 1.60 16 26 H 0.05 1.47 7.52 -2.39 -0.02 1.45 16 27 H 0.42 2.30 9.06 -74.05 -0.67 1.62 16 28 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.42 2.50 9.06 -74.06 -0.67 1.83 16 30 H 0.15 3.17 5.88 -2.91 -0.02 3.15 16 31 H 0.12 2.80 5.90 -2.39 -0.01 2.79 16 32 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.09 2.90 7.91 -2.39 -0.02 2.88 16 34 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 35 H -0.01 -0.63 7.30 -2.39 -0.02 -0.65 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.08 2.97 7.42 -2.39 -0.02 2.95 16 38 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -74.20 322.93 -3.16 -77.36 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -0.24 Total: 9.73 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 3.92 Total: -21.98 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -5.61 Total: -83.63 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -3.26 Total: -28.98 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.20 -3.16 -77.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228487928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.040 kcal (2) G-P(sol) polarization free energy of solvation -74.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds