Wall clock time and date at job start Fri Apr 10 2020 17:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35363 * 119.25481 * 2 1 4 4 C 1.39835 * 120.09221 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.64409 * 180.02562 * 4 3 2 6 6 C 1.39319 * 118.70455 * 0.02562 * 4 3 2 7 7 C 1.47096 * 120.70459 * 180.02562 * 6 4 3 8 8 O 1.21649 * 119.99745 * 90.00267 * 7 6 4 9 9 N 1.34773 * 120.00606 * 270.00340 * 7 6 4 10 10 C 1.46495 * 120.00465 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47082 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47076 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47102 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00210 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99967 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00017 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00169 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47190 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47061 * 120.00534 * 17 15 13 20 20 H 1.48499 * 109.47325 * 240.00494 * 17 15 13 21 21 C 1.41995 * 118.58714 * 0.02562 * 6 4 3 22 22 O 1.21785 * 120.10422 * 180.02562 * 21 6 4 23 23 O 1.33828 * 119.24725 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47580 * 89.99240 * 1 2 3 25 25 H 1.09002 * 109.47359 * 209.99971 * 1 2 3 26 26 H 1.09005 * 109.46658 * 329.99548 * 1 2 3 27 27 H 1.08005 * 119.95176 * 0.26197 * 3 2 1 28 28 H 1.08995 * 109.47545 * 90.00415 * 5 4 3 29 29 H 1.09008 * 109.46997 * 209.99876 * 5 4 3 30 30 H 1.08996 * 109.47676 * 329.99677 * 5 4 3 31 31 H 0.97005 * 119.99297 * 359.97438 * 9 7 6 32 32 H 1.09007 * 109.46868 * 299.99195 * 10 9 7 33 33 H 1.08992 * 109.47635 * 59.99522 * 10 9 7 34 34 H 1.08996 * 109.47289 * 299.99385 * 11 10 9 35 35 H 1.08997 * 109.47065 * 60.00202 * 11 10 9 36 36 H 1.08999 * 109.47561 * 300.00130 * 12 11 10 37 37 H 1.09005 * 109.46912 * 59.99991 * 12 11 10 38 38 H 0.97005 * 120.00519 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1685 1.1810 0.0000 4 6 3.5667 1.2014 0.0005 5 6 4.3158 2.5090 0.0011 6 6 4.2537 -0.0107 0.0005 7 6 5.7243 -0.0405 0.0017 8 8 6.3316 -0.0534 1.0557 9 7 6.3991 -0.0536 -1.1649 10 6 7.8637 -0.0839 -1.1638 11 6 8.3747 -0.0940 -2.6059 12 6 9.9044 -0.1250 -2.6047 13 6 10.4078 -0.1356 -4.0251 14 1 9.7067 -0.1212 -4.8466 15 6 11.7633 -0.1626 -4.2759 16 7 12.6169 -0.1796 -3.2757 17 14 12.3873 -0.1751 -6.0366 18 1 11.2332 -0.1515 -6.9709 19 1 13.2365 1.0207 -6.2692 20 1 13.1880 -1.4038 -6.2693 21 6 3.5039 -1.2165 -0.0006 22 8 4.0761 -2.2916 -0.0002 23 8 2.1609 -1.1677 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6156 2.1088 0.0043 28 1 4.4961 2.8241 1.0289 29 1 5.2689 2.3820 -0.5124 30 1 3.7245 3.2668 -0.5128 31 1 5.9148 -0.0437 -2.0054 32 1 8.2449 0.7982 -0.6491 33 1 8.2082 -0.9814 -0.6503 34 1 7.9936 -0.9762 -3.1202 35 1 8.0303 0.8034 -3.1197 36 1 10.2854 0.7573 -2.0904 37 1 10.2492 -1.0223 -2.0907 38 1 13.5706 -0.1990 -3.4521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262751821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:11 Heat of formation + Delta-G solvation = -100.534994 kcal Electronic energy + Delta-G solvation = -20963.606240 eV Core-core repulsion = 17578.483801 eV Total energy + Delta-G solvation = -3385.122439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.33915 -39.51650 -38.06730 -36.21855 -35.34014 -33.34288 -33.11370 -31.20833 -29.40265 -28.33750 -26.59553 -24.62083 -23.13656 -22.36477 -21.01315 -20.50022 -18.64446 -18.19362 -17.24070 -16.76675 -16.40073 -15.91023 -15.34515 -15.09727 -14.45181 -14.43527 -14.16108 -14.00701 -13.85981 -13.68267 -13.54010 -13.11798 -12.72095 -12.67115 -12.30049 -12.22170 -11.83280 -11.67545 -10.90965 -10.88117 -10.72722 -10.59420 -10.55361 -10.00021 -9.85171 -9.39568 -9.09409 -8.78489 -8.67334 -8.36001 -6.00387 -4.03332 -0.09407 1.23118 1.87466 2.65259 2.78277 3.31082 3.37491 3.39268 3.42830 3.77149 3.92375 4.29417 4.45564 4.52598 4.64312 4.71119 4.77366 5.04185 5.15298 5.17986 5.22887 5.35463 5.44436 5.63776 5.73340 5.78884 5.80374 6.18126 6.47092 6.62119 6.77805 6.84034 7.01564 7.24224 7.65555 7.66803 7.78191 7.98599 8.32206 8.40275 9.03538 9.60788 11.10985 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.030906 B = 0.002961 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.768391 B = 9452.905010 C = 9476.755443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.156 3.844 3 C -0.255 4.255 4 C 0.074 3.926 5 C -0.135 4.135 6 C -0.292 4.292 7 C 0.584 3.416 8 O -0.529 6.529 9 N -0.713 5.713 10 C 0.115 3.885 11 C -0.121 4.121 12 C 0.023 3.977 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.515 3.485 22 O -0.457 6.457 23 O -0.259 6.259 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.161 0.839 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.399 0.601 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.746 6.514 5.913 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 C -0.274 4.274 4 C 0.072 3.928 5 C -0.191 4.191 6 C -0.297 4.297 7 C 0.368 3.632 8 O -0.406 6.406 9 N -0.363 5.363 10 C -0.007 4.007 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.365 3.635 22 O -0.344 6.344 23 O -0.168 6.168 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.178 0.822 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.233 0.767 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.885 5.775 6.709 28.304 hybrid contribution 0.322 0.093 -1.334 1.375 sum -26.563 5.868 5.376 27.729 Atomic orbital electron populations 1.21061 0.85303 1.05590 1.05108 1.22594 0.94877 0.82615 0.89138 1.20885 0.93775 0.98601 1.14131 1.20799 0.93224 0.95126 0.83620 1.21116 1.00935 0.92583 1.04440 1.21299 0.96139 0.93192 1.19105 1.17201 0.84994 0.76514 0.84489 1.90821 1.69161 1.49348 1.31258 1.46183 1.08712 1.73707 1.07710 1.21724 0.76713 1.02255 0.99983 1.21895 1.00858 1.00950 0.92151 1.19037 0.87293 0.97712 0.97372 1.21240 0.91643 1.50735 0.92329 0.92596 1.25034 0.97089 0.95307 0.97080 1.69977 1.02076 1.50660 1.30574 0.86526 0.78850 0.77591 0.84958 1.19761 1.21020 1.20989 1.18828 0.77893 0.90010 0.76782 1.91059 1.63439 1.32061 1.47880 1.83438 1.25180 1.33997 1.74200 0.88202 0.89088 0.88036 0.82185 0.88586 0.89797 0.89566 0.76739 0.91504 0.91458 0.92612 0.92714 0.96239 0.96191 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.26 10.18 36.01 0.37 0.11 16 2 C 0.16 1.05 6.95 -35.33 -0.25 0.81 16 3 C -0.25 -1.58 9.28 -40.01 -0.37 -1.96 16 4 C 0.07 0.70 5.97 -103.63 -0.62 0.08 16 5 C -0.13 -1.04 9.68 36.00 0.35 -0.69 16 6 C -0.29 -4.02 5.67 -104.46 -0.59 -4.61 16 7 C 0.58 9.97 5.41 -12.67 -0.07 9.91 16 8 O -0.53 -11.06 17.11 5.23 0.09 -10.97 16 9 N -0.71 -11.41 5.55 -61.49 -0.34 -11.75 16 10 C 0.12 2.14 5.67 -4.04 -0.02 2.12 16 11 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.51 7.64 7.98 32.17 0.26 7.90 16 22 O -0.46 -8.66 17.42 -19.51 -0.34 -9.00 16 23 O -0.26 -2.89 9.79 -17.91 -0.18 -3.07 16 24 H 0.10 0.10 8.14 -51.93 -0.42 -0.33 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.10 0.00 8.06 -51.93 -0.42 -0.42 16 27 H 0.16 0.41 8.06 -52.48 -0.42 -0.01 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.80 7.16 -51.92 -0.37 0.43 16 30 H 0.09 0.41 8.10 -51.93 -0.42 -0.02 16 31 H 0.40 5.35 8.46 -40.82 -0.35 5.01 16 32 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -37.12 334.79 -6.97 -44.09 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.33 Total: -2.68 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.64 Total: -1.95 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.40 Total: -38.12 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.43 Total: -23.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.12 -6.97 -44.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262751821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.443 kcal (2) G-P(sol) polarization free energy of solvation -37.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds