Wall clock time and date at job start Fri Apr 10 2020 17:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35363 * 119.25481 * 2 1 4 4 C 1.39835 * 120.09221 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.64409 * 180.02562 * 4 3 2 6 6 C 1.39319 * 118.70455 * 0.02562 * 4 3 2 7 7 C 1.47096 * 120.70459 * 180.02562 * 6 4 3 8 8 O 1.21649 * 119.99745 * 90.00267 * 7 6 4 9 9 N 1.34773 * 120.00606 * 270.00340 * 7 6 4 10 10 C 1.46495 * 120.00465 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47082 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47076 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47102 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00210 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99967 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00017 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00169 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47190 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47061 * 120.00534 * 17 15 13 20 20 H 1.48499 * 109.47325 * 240.00494 * 17 15 13 21 21 C 1.41995 * 118.58714 * 0.02562 * 6 4 3 22 22 O 1.21785 * 120.10422 * 180.02562 * 21 6 4 23 23 O 1.33828 * 119.24725 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47580 * 89.99240 * 1 2 3 25 25 H 1.09002 * 109.47359 * 209.99971 * 1 2 3 26 26 H 1.09005 * 109.46658 * 329.99548 * 1 2 3 27 27 H 1.08005 * 119.95176 * 0.26197 * 3 2 1 28 28 H 1.08995 * 109.47545 * 90.00415 * 5 4 3 29 29 H 1.09008 * 109.46997 * 209.99876 * 5 4 3 30 30 H 1.08996 * 109.47676 * 329.99677 * 5 4 3 31 31 H 0.97005 * 119.99297 * 359.97438 * 9 7 6 32 32 H 1.09007 * 109.46868 * 299.99195 * 10 9 7 33 33 H 1.08992 * 109.47635 * 59.99522 * 10 9 7 34 34 H 1.08996 * 109.47289 * 299.99385 * 11 10 9 35 35 H 1.08997 * 109.47065 * 60.00202 * 11 10 9 36 36 H 1.08999 * 109.47561 * 300.00130 * 12 11 10 37 37 H 1.09005 * 109.46912 * 59.99991 * 12 11 10 38 38 H 0.97005 * 120.00519 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1685 1.1810 0.0000 4 6 3.5667 1.2014 0.0005 5 6 4.3158 2.5090 0.0011 6 6 4.2537 -0.0107 0.0005 7 6 5.7243 -0.0405 0.0017 8 8 6.3316 -0.0534 1.0557 9 7 6.3991 -0.0536 -1.1649 10 6 7.8637 -0.0839 -1.1638 11 6 8.3747 -0.0940 -2.6059 12 6 9.9044 -0.1250 -2.6047 13 6 10.4078 -0.1356 -4.0251 14 1 9.7067 -0.1212 -4.8466 15 6 11.7633 -0.1626 -4.2759 16 7 12.6169 -0.1796 -3.2757 17 14 12.3873 -0.1751 -6.0366 18 1 11.2332 -0.1515 -6.9709 19 1 13.2365 1.0207 -6.2692 20 1 13.1880 -1.4038 -6.2693 21 6 3.5039 -1.2165 -0.0006 22 8 4.0761 -2.2916 -0.0002 23 8 2.1609 -1.1677 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6156 2.1088 0.0043 28 1 4.4961 2.8241 1.0289 29 1 5.2689 2.3820 -0.5124 30 1 3.7245 3.2668 -0.5128 31 1 5.9148 -0.0437 -2.0054 32 1 8.2449 0.7982 -0.6491 33 1 8.2082 -0.9814 -0.6503 34 1 7.9936 -0.9762 -3.1202 35 1 8.0303 0.8034 -3.1197 36 1 10.2854 0.7573 -2.0904 37 1 10.2492 -1.0223 -2.0907 38 1 13.5706 -0.1990 -3.4521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262751821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:11 Heat of formation + Delta-G solvation = -126.659722 kcal Electronic energy + Delta-G solvation = -20964.739094 eV Core-core repulsion = 17578.483801 eV Total energy + Delta-G solvation = -3386.255292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.21738 -40.80773 -39.13697 -37.20550 -36.85917 -35.22923 -33.79889 -33.00311 -30.33026 -29.11747 -28.16953 -25.69111 -24.79288 -23.10003 -22.40848 -22.16638 -19.53721 -19.33949 -18.54378 -18.14270 -17.67386 -17.18921 -16.61992 -16.58883 -16.40607 -15.32356 -15.04771 -14.95986 -14.76969 -14.49025 -14.32975 -14.22293 -13.85290 -13.79336 -13.50232 -13.30483 -13.29002 -12.80567 -12.78635 -12.59653 -12.38532 -11.80949 -11.72826 -11.56416 -11.47945 -11.26459 -11.04847 -10.57592 -10.24217 -9.49454 -8.20767 -6.32551 -0.86075 0.44598 0.97799 1.40691 1.41534 1.47050 1.54734 1.87855 2.19181 2.41758 3.07255 3.12925 3.24845 3.51053 3.82353 3.95135 4.10829 4.14860 4.31425 4.37093 4.49133 4.56983 4.67184 4.72634 4.87272 4.88053 4.90156 5.02982 5.11197 5.12391 5.24691 5.31205 5.49202 5.67268 5.81910 5.95015 6.20084 6.28037 6.38292 6.84592 7.03958 7.37048 8.91762 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.030906 B = 0.002961 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.768391 B = 9452.905010 C = 9476.755443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.166 3.834 3 C -0.252 4.252 4 C 0.112 3.888 5 C -0.140 4.140 6 C -0.351 4.351 7 C 0.588 3.412 8 O -0.580 6.580 9 N -0.703 5.703 10 C 0.128 3.872 11 C -0.100 4.100 12 C 0.024 3.976 13 C -0.540 4.540 14 H 0.066 0.934 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.281 1.281 21 C 0.513 3.487 22 O -0.527 6.527 23 O -0.264 6.264 24 H 0.122 0.878 25 H 0.091 0.909 26 H 0.138 0.862 27 H 0.214 0.786 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.130 0.870 31 H 0.413 0.587 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.075 0.925 36 H -0.003 1.003 37 H -0.011 1.011 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.489 8.991 4.289 33.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 C -0.270 4.270 4 C 0.110 3.890 5 C -0.195 4.195 6 C -0.356 4.356 7 C 0.374 3.626 8 O -0.460 6.460 9 N -0.354 5.354 10 C 0.005 3.995 11 C -0.138 4.138 12 C -0.014 4.014 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.182 1.182 19 H -0.203 1.203 20 H -0.207 1.207 21 C 0.368 3.632 22 O -0.421 6.421 23 O -0.173 6.173 24 H 0.140 0.860 25 H 0.109 0.891 26 H 0.156 0.844 27 H 0.231 0.769 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.249 0.751 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.016 0.984 37 H 0.007 0.993 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -30.695 8.282 5.056 32.193 hybrid contribution 1.255 -0.538 -0.779 1.572 sum -29.440 7.744 4.277 30.741 Atomic orbital electron populations 1.21399 0.81204 1.07384 1.06899 1.23829 0.96925 0.81522 0.85952 1.21442 0.92087 1.00447 1.12984 1.21238 0.94839 0.94081 0.78793 1.21291 1.00552 0.92597 1.05080 1.20797 0.93846 0.94652 1.26344 1.17693 0.86628 0.74728 0.83531 1.90768 1.70820 1.51542 1.32896 1.45992 1.07452 1.73343 1.08581 1.21342 0.78591 1.00931 0.98673 1.21601 0.96842 1.02163 0.93221 1.18943 0.91145 0.95146 0.96123 1.21690 0.92302 1.50458 0.93389 0.91542 1.26049 0.97426 0.94719 1.01989 1.70123 1.02526 1.51668 1.33272 0.85333 0.78495 0.77672 0.79130 1.18181 1.20291 1.20690 1.18850 0.78819 0.89502 0.76078 1.91003 1.65223 1.33931 1.51928 1.83432 1.23585 1.36656 1.73635 0.85977 0.89056 0.84400 0.76917 0.87911 0.91977 0.85202 0.75080 0.91934 0.93903 0.92021 0.90645 0.98443 0.99305 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.10 10.18 71.24 0.73 0.82 16 2 C 0.17 1.61 6.95 25.02 0.17 1.78 16 3 C -0.25 -1.89 9.28 21.99 0.20 -1.69 16 4 C 0.11 1.83 5.97 -19.22 -0.11 1.72 16 5 C -0.14 -1.73 9.68 71.23 0.69 -1.04 16 6 C -0.35 -9.82 5.67 -19.76 -0.11 -9.93 16 7 C 0.59 21.19 5.41 86.57 0.47 21.66 16 8 O -0.58 -25.98 17.11 -4.19 -0.07 -26.05 16 9 N -0.70 -23.47 5.55 -466.69 -2.59 -26.07 16 10 C 0.13 5.02 5.67 86.38 0.49 5.51 16 11 C -0.10 -4.13 5.27 30.60 0.16 -3.97 16 12 C 0.02 1.30 4.97 29.85 0.15 1.45 16 13 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 14 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 15 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 16 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 17 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 C 0.51 15.88 7.98 68.75 0.55 16.43 16 22 O -0.53 -21.72 17.42 18.93 0.33 -21.39 16 23 O -0.26 -5.69 9.79 24.68 0.24 -5.45 16 24 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 26 H 0.14 -0.98 8.06 -2.38 -0.02 -1.00 16 27 H 0.21 -0.59 8.06 -2.91 -0.02 -0.61 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.11 7.16 -2.38 -0.02 1.09 16 30 H 0.13 0.51 8.10 -2.39 -0.02 0.49 16 31 H 0.41 11.25 8.46 -92.70 -0.78 10.46 16 32 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 38 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -88.70 334.79 4.59 -84.11 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 0.29 Total: 3.89 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.08 Total: 2.30 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -2.31 Total: -83.98 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: 0.50 Total: -52.88 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -88.70 4.59 -84.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262751821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.551 kcal (2) G-P(sol) polarization free energy of solvation -88.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds