Wall clock time and date at job start Fri Apr 10 2020 17:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48507 * 109.47053 * 90.00021 * 3 2 1 5 5 H 1.48506 * 109.46850 * 209.99426 * 3 2 1 6 6 H 1.48498 * 109.47267 * 329.99728 * 3 2 1 7 7 C 1.37880 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99768 * 196.84942 * 7 2 1 9 9 C 1.50695 * 119.99910 * 16.85272 * 7 2 1 10 10 O 1.42901 * 112.94461 * 51.14399 * 9 7 2 11 11 C 1.53943 * 113.74429 * 279.40814 * 9 7 2 12 12 N 1.47579 * 86.11931 * 222.04907 * 11 9 7 13 13 C 1.34776 * 134.49098 * 204.63539 * 12 11 9 14 14 O 1.21289 * 119.99765 * 184.65617 * 13 12 11 15 15 C 1.50694 * 120.00491 * 4.66181 * 13 12 11 16 16 C 1.50704 * 115.54830 * 279.71790 * 15 13 12 17 17 O 1.20763 * 120.00349 * 117.68748 * 16 15 13 18 18 C 1.50704 * 119.99658 * 297.68830 * 16 15 13 19 19 C 1.53003 * 117.49562 * 220.81904 * 18 16 15 20 20 C 1.52999 * 117.49605 * 152.16044 * 18 16 15 21 21 C 1.52990 * 117.50409 * 134.00499 * 15 13 12 22 22 C 1.53003 * 60.00286 * 252.51207 * 21 15 13 23 23 C 1.47580 * 91.01354 * 24.63785 * 12 11 9 24 24 H 0.96999 * 120.00245 * 175.18105 * 1 2 3 25 25 H 0.96701 * 113.99779 * 304.27131 * 10 9 7 26 26 H 1.09003 * 113.77013 * 336.34991 * 11 9 7 27 27 H 1.08994 * 113.77356 * 107.74690 * 11 9 7 28 28 H 1.09001 * 115.54965 * 6.48593 * 18 16 15 29 29 H 1.08993 * 117.50071 * 359.97438 * 19 18 16 30 30 H 1.08999 * 117.49747 * 145.02137 * 19 18 16 31 31 H 1.09001 * 117.49248 * 214.97753 * 20 18 16 32 32 H 1.08990 * 117.50303 * 359.97438 * 20 18 16 33 33 H 1.09004 * 117.49740 * 359.97438 * 21 15 13 34 34 H 1.09001 * 117.50493 * 145.02260 * 21 15 13 35 35 H 1.08995 * 117.49488 * 252.51283 * 22 21 15 36 36 H 1.08994 * 117.49835 * 107.48759 * 22 21 15 37 37 H 1.09002 * 113.76875 * 221.05504 * 23 12 11 38 38 H 1.09011 * 113.86960 * 89.67475 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0498 -1.2141 0.2717 9 6 1.2996 -2.4713 -0.3773 10 8 0.5966 -2.3737 -1.6176 11 6 0.4653 -3.0799 0.7645 12 7 1.0052 -4.3828 0.3298 13 6 0.5880 -5.6601 0.4335 14 8 1.2971 -6.5633 0.0428 15 6 -0.7595 -5.9663 1.0346 16 6 -0.8162 -5.9587 2.5406 17 8 -1.5222 -5.1646 3.1143 18 6 0.0083 -6.9423 3.3306 19 6 -0.6451 -7.5906 4.5528 20 6 0.4428 -6.5297 4.7383 21 6 -1.6500 -6.9693 0.2988 22 6 -1.9974 -5.4794 0.2787 23 6 2.1855 -3.7251 -0.2640 24 1 -0.4850 -0.8370 -0.0706 25 1 -0.0444 -1.6504 -1.6505 26 1 0.7946 -2.7775 1.7586 27 1 -0.6109 -2.9811 0.6232 28 1 0.7005 -7.5503 2.7480 29 1 -1.6709 -7.3054 4.7857 30 1 -0.3823 -8.6249 4.7746 31 1 1.4207 -6.8666 5.0821 32 1 0.1327 -5.5469 5.0930 33 1 -1.2614 -7.4075 -0.6205 34 1 -2.2770 -7.6243 0.9037 35 1 -2.8529 -5.1542 0.8706 36 1 -1.8371 -4.9378 -0.6535 37 1 2.4827 -4.1416 -1.2265 38 1 3.0213 -3.6116 0.4266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296602248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:15 Heat of formation + Delta-G solvation = -29.701524 kcal Electronic energy + Delta-G solvation = -22433.794428 eV Core-core repulsion = 19051.743558 eV Total energy + Delta-G solvation = -3382.050869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64160 -39.41162 -37.86237 -36.43964 -35.64005 -34.36489 -32.37725 -28.91209 -26.86135 -25.56252 -25.07129 -22.86231 -22.62327 -22.40335 -20.75097 -19.53833 -18.39170 -17.99761 -17.01952 -16.03451 -15.82632 -15.70877 -15.03755 -14.73821 -14.52483 -14.14524 -13.91735 -13.70194 -13.55739 -12.87318 -12.71110 -12.47574 -12.14103 -11.74148 -11.67627 -11.61104 -11.17358 -11.16451 -10.92834 -10.86396 -10.66216 -10.60594 -10.45861 -10.24433 -9.78038 -9.46909 -9.34816 -8.89522 -8.40735 -7.95723 -6.72863 -4.48883 1.65847 2.85956 3.16464 3.29331 3.35338 3.50673 3.51271 3.67287 3.90010 4.29084 4.57411 4.62189 4.70887 4.76517 4.82608 4.84132 4.97352 5.15733 5.27357 5.39517 5.51560 5.58070 5.66869 5.70845 5.83286 5.86781 5.91741 5.99858 6.04884 6.13181 6.32677 6.38320 6.43012 6.74251 7.38725 7.61375 8.08097 8.21734 8.42545 8.52116 8.78077 9.21488 10.60351 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.005207 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.252499 B = 5375.990580 C = 5733.484201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.035 3.965 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.621 4.621 8 H 0.066 0.934 9 C 0.218 3.782 10 O -0.566 6.566 11 C 0.074 3.926 12 N -0.624 5.624 13 C 0.573 3.427 14 O -0.551 6.551 15 C -0.207 4.207 16 C 0.433 3.567 17 O -0.440 6.440 18 C -0.217 4.217 19 C -0.148 4.148 20 C -0.149 4.149 21 C -0.125 4.125 22 C -0.140 4.140 23 C 0.124 3.876 24 H 0.267 0.733 25 H 0.375 0.625 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -10.885 5.386 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.171 4.171 3 Si 0.900 3.100 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.659 4.659 8 H 0.084 0.916 9 C 0.177 3.823 10 O -0.374 6.374 11 C -0.049 4.049 12 N -0.357 5.357 13 C 0.360 3.640 14 O -0.430 6.430 15 C -0.211 4.211 16 C 0.308 3.692 17 O -0.312 6.312 18 C -0.236 4.236 19 C -0.185 4.185 20 C -0.186 4.186 21 C -0.163 4.163 22 C -0.177 4.177 23 C 0.002 3.998 24 H 0.080 0.920 25 H 0.224 0.776 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.147 0.853 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.613 -10.007 5.414 11.674 hybrid contribution -0.046 -1.292 0.109 1.297 sum -2.659 -11.298 5.523 12.854 Atomic orbital electron populations 1.70959 1.06917 1.30849 1.44156 1.26009 0.96178 1.03149 0.91788 0.83487 0.75030 0.74419 0.77081 1.21192 1.21025 1.20625 1.22201 0.99396 0.92070 1.52205 0.91563 1.20130 0.88316 0.92853 0.81046 1.86247 1.58265 1.56239 1.36636 1.24509 0.99925 0.78715 1.01764 1.50155 1.25077 1.04586 1.55874 1.18518 0.85295 0.81461 0.78680 1.90648 1.56350 1.44882 1.51167 1.21775 0.93773 1.11226 0.94340 1.22482 0.78151 0.80727 0.87877 1.90394 1.34124 1.34382 1.72260 1.22758 1.05130 1.03981 0.91740 1.22955 0.98876 0.98557 0.98062 1.22995 0.99782 1.00679 0.95177 1.22987 0.98959 0.92721 1.01584 1.23103 0.95915 0.96845 1.01802 1.23364 0.89399 0.89617 0.97412 0.92044 0.77593 0.89641 0.91429 0.85309 0.88065 0.87651 0.87658 0.87706 0.87140 0.87694 0.87257 0.87212 0.90850 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.59 13.05 55.43 0.72 -22.87 16 2 C 0.04 0.90 5.21 -17.82 -0.09 0.80 16 3 Si 1.07 22.87 29.94 -169.99 -5.09 17.78 16 4 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.62 -15.74 8.56 -34.44 -0.29 -16.04 16 8 H 0.07 1.67 7.87 -52.49 -0.41 1.25 16 9 C 0.22 5.12 1.08 -90.85 -0.10 5.02 16 10 O -0.57 -13.69 13.45 -35.23 -0.47 -14.17 16 11 C 0.07 1.61 7.22 -2.98 -0.02 1.59 16 12 N -0.62 -13.14 3.61 -178.31 -0.64 -13.78 16 13 C 0.57 11.48 7.13 -10.99 -0.08 11.40 16 14 O -0.55 -12.15 17.73 5.55 0.10 -12.05 16 15 C -0.21 -3.42 1.95 -156.82 -0.31 -3.73 16 16 C 0.43 6.92 6.21 -29.03 -0.18 6.74 16 17 O -0.44 -7.84 16.72 6.00 0.10 -7.74 16 18 C -0.22 -2.89 6.05 -91.77 -0.56 -3.44 16 19 C -0.15 -1.52 10.12 -26.69 -0.27 -1.79 16 20 C -0.15 -1.73 10.06 -26.69 -0.27 -2.00 16 21 C -0.13 -1.65 9.86 -26.73 -0.26 -1.92 16 22 C -0.14 -2.07 9.65 -26.73 -0.26 -2.32 16 23 C 0.12 2.67 8.23 -2.98 -0.02 2.65 16 24 H 0.27 6.90 5.38 -40.82 -0.22 6.68 16 25 H 0.37 8.86 6.73 45.56 0.31 9.17 16 26 H 0.09 1.91 8.09 -51.93 -0.42 1.49 16 27 H 0.07 1.47 7.81 -51.93 -0.41 1.06 16 28 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.32 7.94 -51.93 -0.41 0.91 16 33 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.11 1.52 7.94 -51.93 -0.41 1.11 16 36 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.09 1.82 8.09 -51.92 -0.42 1.40 16 LS Contribution 332.12 15.07 5.00 5.00 Total: -1.00 -29.65 332.12 -7.56 -37.21 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -4.57 Total: 13.64 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.71 Total: -3.03 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.08 Total: -36.65 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.28 Total: -33.95 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.09 Total: 17.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.65 -7.56 -37.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296602248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.508 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds