Wall clock time and date at job start Fri Apr 10 2020 17:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48507 * 109.47053 * 90.00021 * 3 2 1 5 5 H 1.48506 * 109.46850 * 209.99426 * 3 2 1 6 6 H 1.48498 * 109.47267 * 329.99728 * 3 2 1 7 7 C 1.37880 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99768 * 196.84942 * 7 2 1 9 9 C 1.50695 * 119.99910 * 16.85272 * 7 2 1 10 10 O 1.42901 * 112.94461 * 51.14399 * 9 7 2 11 11 C 1.53943 * 113.74429 * 279.40814 * 9 7 2 12 12 N 1.47579 * 86.11931 * 222.04907 * 11 9 7 13 13 C 1.34776 * 134.49098 * 204.63539 * 12 11 9 14 14 O 1.21289 * 119.99765 * 184.65617 * 13 12 11 15 15 C 1.50694 * 120.00491 * 4.66181 * 13 12 11 16 16 C 1.50704 * 115.54830 * 279.71790 * 15 13 12 17 17 O 1.20763 * 120.00349 * 117.68748 * 16 15 13 18 18 C 1.50704 * 119.99658 * 297.68830 * 16 15 13 19 19 C 1.53003 * 117.49562 * 220.81904 * 18 16 15 20 20 C 1.52999 * 117.49605 * 152.16044 * 18 16 15 21 21 C 1.52990 * 117.50409 * 134.00499 * 15 13 12 22 22 C 1.53003 * 60.00286 * 252.51207 * 21 15 13 23 23 C 1.47580 * 91.01354 * 24.63785 * 12 11 9 24 24 H 0.96999 * 120.00245 * 175.18105 * 1 2 3 25 25 H 0.96701 * 113.99779 * 304.27131 * 10 9 7 26 26 H 1.09003 * 113.77013 * 336.34991 * 11 9 7 27 27 H 1.08994 * 113.77356 * 107.74690 * 11 9 7 28 28 H 1.09001 * 115.54965 * 6.48593 * 18 16 15 29 29 H 1.08993 * 117.50071 * 359.97438 * 19 18 16 30 30 H 1.08999 * 117.49747 * 145.02137 * 19 18 16 31 31 H 1.09001 * 117.49248 * 214.97753 * 20 18 16 32 32 H 1.08990 * 117.50303 * 359.97438 * 20 18 16 33 33 H 1.09004 * 117.49740 * 359.97438 * 21 15 13 34 34 H 1.09001 * 117.50493 * 145.02260 * 21 15 13 35 35 H 1.08995 * 117.49488 * 252.51283 * 22 21 15 36 36 H 1.08994 * 117.49835 * 107.48759 * 22 21 15 37 37 H 1.09002 * 113.76875 * 221.05504 * 23 12 11 38 38 H 1.09011 * 113.86960 * 89.67475 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0498 -1.2141 0.2717 9 6 1.2996 -2.4713 -0.3773 10 8 0.5966 -2.3737 -1.6176 11 6 0.4653 -3.0799 0.7645 12 7 1.0052 -4.3828 0.3298 13 6 0.5880 -5.6601 0.4335 14 8 1.2971 -6.5633 0.0428 15 6 -0.7595 -5.9663 1.0346 16 6 -0.8162 -5.9587 2.5406 17 8 -1.5222 -5.1646 3.1143 18 6 0.0083 -6.9423 3.3306 19 6 -0.6451 -7.5906 4.5528 20 6 0.4428 -6.5297 4.7383 21 6 -1.6500 -6.9693 0.2988 22 6 -1.9974 -5.4794 0.2787 23 6 2.1855 -3.7251 -0.2640 24 1 -0.4850 -0.8370 -0.0706 25 1 -0.0444 -1.6504 -1.6505 26 1 0.7946 -2.7775 1.7586 27 1 -0.6109 -2.9811 0.6232 28 1 0.7005 -7.5503 2.7480 29 1 -1.6709 -7.3054 4.7857 30 1 -0.3823 -8.6249 4.7746 31 1 1.4207 -6.8666 5.0821 32 1 0.1327 -5.5469 5.0930 33 1 -1.2614 -7.4075 -0.6205 34 1 -2.2770 -7.6243 0.9037 35 1 -2.8529 -5.1542 0.8706 36 1 -1.8371 -4.9378 -0.6535 37 1 2.4827 -4.1416 -1.2265 38 1 3.0213 -3.6116 0.4266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296602248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:14 Heat of formation + Delta-G solvation = -48.775330 kcal Electronic energy + Delta-G solvation = -22434.621530 eV Core-core repulsion = 19051.743558 eV Total energy + Delta-G solvation = -3382.877972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.03462 -40.94343 -39.46523 -37.56256 -36.87352 -36.22219 -34.33824 -30.63261 -28.13580 -27.34418 -26.86525 -24.21687 -23.57423 -23.45002 -22.24793 -21.07743 -20.21055 -19.43949 -18.49869 -17.66015 -17.22825 -16.93636 -16.69076 -16.36380 -15.77188 -15.69887 -15.53057 -15.23571 -14.87293 -14.50039 -14.19484 -13.95206 -13.78197 -13.51196 -13.04941 -12.77844 -12.67815 -12.55682 -12.46184 -12.31459 -11.91449 -11.84676 -11.66545 -11.60745 -11.23479 -11.17604 -10.86273 -10.74826 -10.24107 -9.75978 -8.73603 -6.51254 0.44819 1.30482 1.57263 1.62601 1.65670 1.84733 2.35324 2.52164 2.62744 2.76797 2.87942 3.16047 3.44355 3.53765 3.62452 3.65218 3.85160 3.88592 3.92961 4.10941 4.22423 4.33688 4.42546 4.47130 4.53599 4.57802 4.60444 4.70157 4.73295 4.81914 4.89664 4.90534 4.94394 5.08614 5.67759 6.06317 6.18138 6.41405 6.55349 6.84708 6.88709 7.25354 8.60334 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.005207 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.252499 B = 5375.990580 C = 5733.484201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.003 4.003 3 Si 1.116 2.884 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.636 4.636 8 H 0.064 0.936 9 C 0.204 3.796 10 O -0.573 6.573 11 C 0.091 3.909 12 N -0.627 5.627 13 C 0.572 3.428 14 O -0.572 6.572 15 C -0.231 4.231 16 C 0.435 3.565 17 O -0.466 6.466 18 C -0.239 4.239 19 C -0.119 4.119 20 C -0.153 4.153 21 C -0.096 4.096 22 C -0.142 4.142 23 C 0.123 3.877 24 H 0.262 0.738 25 H 0.374 0.626 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 -12.011 6.281 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.205 4.205 3 Si 0.938 3.062 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.673 4.673 8 H 0.082 0.918 9 C 0.163 3.837 10 O -0.380 6.380 11 C -0.033 4.033 12 N -0.360 5.360 13 C 0.362 3.638 14 O -0.453 6.453 15 C -0.235 4.235 16 C 0.312 3.688 17 O -0.340 6.340 18 C -0.257 4.257 19 C -0.156 4.156 20 C -0.190 4.190 21 C -0.133 4.133 22 C -0.179 4.179 23 C 0.002 3.998 24 H 0.074 0.926 25 H 0.223 0.777 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.684 -11.165 6.309 13.103 hybrid contribution -0.012 -0.991 -0.197 1.011 sum -2.696 -12.157 6.113 13.872 Atomic orbital electron populations 1.71037 1.07576 1.30671 1.45517 1.27170 0.96302 1.06056 0.91008 0.82921 0.74353 0.71246 0.77674 1.20042 1.19885 1.20736 1.22450 0.99472 0.93124 1.52297 0.91787 1.20280 0.89082 0.93151 0.81187 1.86230 1.58333 1.56233 1.37237 1.24165 0.99401 0.79059 1.00637 1.50149 1.24790 1.04934 1.56091 1.19055 0.86310 0.80533 0.77932 1.90625 1.57432 1.45168 1.52069 1.21830 0.92195 1.14311 0.95174 1.22746 0.77849 0.80666 0.87588 1.90383 1.35607 1.35583 1.72473 1.22729 1.06057 1.04531 0.92432 1.23119 0.98432 0.99693 0.94371 1.23106 1.01510 1.00779 0.93567 1.23171 0.96919 0.92008 1.01221 1.23113 0.95296 0.98423 1.01040 1.23345 0.89821 0.88899 0.97774 0.92633 0.77654 0.90436 0.91678 0.85512 0.88063 0.84558 0.85656 0.89215 0.86992 0.84435 0.86388 0.88509 0.91087 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.41 13.05 21.45 0.28 -48.13 16 2 C 0.00 -0.17 5.21 84.65 0.44 0.27 16 3 Si 1.12 45.54 29.94 68.60 2.05 47.60 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.64 -32.33 8.56 25.60 0.22 -32.11 16 8 H 0.06 3.21 7.87 -2.91 -0.02 3.19 16 9 C 0.20 9.69 1.08 -10.88 -0.01 9.68 16 10 O -0.57 -28.10 13.45 -148.98 -2.00 -30.10 16 11 C 0.09 4.02 7.22 86.48 0.62 4.64 16 12 N -0.63 -26.53 3.61 -840.27 -3.03 -29.56 16 13 C 0.57 22.79 7.13 87.66 0.63 23.41 16 14 O -0.57 -24.98 17.73 -3.06 -0.05 -25.03 16 15 C -0.23 -7.44 1.95 -53.68 -0.10 -7.55 16 16 C 0.44 13.51 6.21 29.10 0.18 13.69 16 17 O -0.47 -16.43 16.72 -1.46 -0.02 -16.46 16 18 C -0.24 -5.95 6.05 -11.54 -0.07 -6.02 16 19 C -0.12 -2.11 10.12 30.62 0.31 -1.80 16 20 C -0.15 -3.26 10.06 30.62 0.31 -2.96 16 21 C -0.10 -2.34 9.86 30.59 0.30 -2.04 16 22 C -0.14 -4.08 9.65 30.60 0.30 -3.78 16 23 C 0.12 5.37 8.23 86.48 0.71 6.08 16 24 H 0.26 13.76 5.38 -92.71 -0.50 13.26 16 25 H 0.37 18.10 6.73 -74.06 -0.50 17.60 16 26 H 0.08 3.54 8.09 -2.39 -0.02 3.52 16 27 H 0.06 2.89 7.81 -2.39 -0.02 2.87 16 28 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.20 7.94 -2.39 -0.02 2.18 16 33 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.12 3.18 7.94 -2.39 -0.02 3.16 16 36 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.10 4.12 8.09 -2.38 -0.02 4.10 16 Total: -1.00 -62.95 332.12 1.90 -61.05 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: 0.85 Total: 39.14 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 3.83 Total: 1.51 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -2.75 Total: -77.70 kcal Atomic # 8 Polarization: -69.51 SS G_CDS: -2.08 Total: -71.60 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.05 Total: 47.60 kcal Total: -62.95 1.90 -61.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296602248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.272 kcal (2) G-P(sol) polarization free energy of solvation -62.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds