Wall clock time and date at job start Fri Apr 10 2020 17:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99626 * 2 1 4 4 H 1.48499 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47505 * 300.00713 * 3 2 1 6 6 H 1.48500 * 109.46930 * 60.00792 * 3 2 1 7 7 C 1.37871 * 120.00497 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00423 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99941 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49709 * 300.06253 * 9 7 2 11 11 C 1.53045 * 109.49988 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53643 * 178.68096 * 11 9 7 13 13 C 1.53192 * 109.31152 * 61.36919 * 12 11 9 14 14 N 1.46930 * 108.77395 * 305.36006 * 13 12 11 15 15 C 1.34771 * 120.62937 * 233.58570 * 14 13 12 16 16 O 1.21617 * 120.00119 * 183.71530 * 15 14 13 17 17 C 1.47387 * 120.00260 * 3.71513 * 15 14 13 18 18 C 1.36415 * 127.19297 * 138.27315 * 17 15 14 19 19 O 1.33643 * 108.39549 * 180.02562 * 18 17 15 20 20 C 1.34217 * 110.91164 * 359.97438 * 19 18 17 21 21 C 1.50701 * 125.44016 * 180.02562 * 20 19 18 22 22 O 1.42906 * 109.47182 * 270.00553 * 21 20 19 23 23 C 1.34177 * 109.12518 * 0.02562 * 20 19 18 24 24 C 1.46925 * 118.73934 * 53.86337 * 14 13 12 25 25 H 0.96997 * 120.00766 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.45383 * 58.66239 * 11 9 7 27 27 H 1.08993 * 109.44772 * 298.69653 * 11 9 7 28 28 H 1.09006 * 109.49779 * 301.41566 * 12 11 9 29 29 H 1.08997 * 109.49253 * 181.31619 * 12 11 9 30 30 H 1.09004 * 109.58428 * 185.57814 * 13 12 11 31 31 H 1.09001 * 109.70525 * 65.21724 * 13 12 11 32 32 H 1.08002 * 125.80172 * 359.97438 * 18 17 15 33 33 H 1.09005 * 109.46925 * 30.00149 * 21 20 19 34 34 H 1.09000 * 109.47382 * 150.00327 * 21 20 19 35 35 H 0.96698 * 113.99737 * 179.97438 * 22 21 20 36 36 H 1.07993 * 127.02856 * 179.73902 * 23 20 19 37 37 H 1.08998 * 109.58492 * 65.92352 * 24 14 13 38 38 H 1.08994 * 109.58836 * 186.34728 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6238 -2.5570 0.8890 11 6 2.2452 -3.6628 -0.0018 12 6 1.4812 -4.9885 0.0314 13 6 0.6050 -5.0997 -1.2203 14 7 -0.2537 -3.9104 -1.3036 15 6 -1.5900 -4.0356 -1.4252 16 8 -2.2836 -3.0459 -1.5612 17 6 -2.2111 -5.3718 -1.3934 18 6 -3.3598 -5.7322 -0.7519 19 8 -3.5750 -7.0329 -0.9713 20 6 -2.6070 -7.5557 -1.7400 21 6 -2.5271 -8.9923 -2.1880 22 8 -1.7904 -9.7508 -1.2266 23 6 -1.7217 -6.5950 -2.0461 24 6 0.3727 -2.5822 -1.2582 25 1 -0.4851 0.8400 0.0004 26 1 2.8881 -3.5920 0.8755 27 1 2.8554 -3.6178 -0.9038 28 1 0.8517 -5.0234 0.9206 29 1 2.1900 -5.8162 0.0540 30 1 -0.0147 -5.9940 -1.1541 31 1 1.2364 -5.1575 -2.1070 32 1 -3.9881 -5.0779 -0.1658 33 1 -3.5335 -9.4010 -2.2792 34 1 -2.0248 -9.0444 -3.1540 35 1 -1.6993 -10.6871 -1.4505 36 1 -0.8296 -6.6997 -2.6457 37 1 0.9873 -2.4375 -2.1466 38 1 -0.4002 -1.8148 -1.2171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330263752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:30 Heat of formation + Delta-G solvation = -67.878077 kcal Electronic energy + Delta-G solvation = -22041.366461 eV Core-core repulsion = 18657.660132 eV Total energy + Delta-G solvation = -3383.706329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.54425 -39.16227 -37.16250 -36.57946 -33.62629 -32.66570 -31.63031 -30.86362 -29.66700 -26.03000 -25.32599 -24.90596 -22.41796 -21.91278 -20.94030 -19.38239 -18.32827 -17.93902 -17.22371 -16.39906 -16.11155 -15.77163 -15.22928 -14.85321 -14.55199 -14.43090 -14.20526 -13.72282 -13.24659 -13.00883 -12.74754 -12.52681 -12.47414 -12.15188 -11.87341 -11.75225 -10.98666 -10.88672 -10.52357 -10.46725 -10.40016 -10.21131 -9.87695 -9.63067 -9.32476 -9.08732 -8.87723 -8.68060 -8.41926 -7.70208 -5.98255 -4.06881 1.54892 2.05949 2.75643 3.31015 3.39608 3.42711 3.49661 3.84106 4.13646 4.44482 4.57873 4.79644 4.85503 4.99995 5.10513 5.32010 5.34518 5.47517 5.56185 5.71032 5.79552 5.99838 6.05099 6.23571 6.28085 6.35845 6.64049 6.70878 6.88618 7.00193 7.03732 7.19110 7.20632 7.31363 7.65965 7.88941 8.01629 8.28529 8.40481 8.88299 8.98211 9.58792 11.07306 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.031798 B = 0.004349 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.356745 B = 6436.176793 C = 7067.251242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.098 3.902 14 N -0.595 5.595 15 C 0.575 3.425 16 O -0.538 6.538 17 C -0.222 4.222 18 C 0.038 3.962 19 O -0.173 6.173 20 C -0.027 4.027 21 C 0.161 3.839 22 O -0.565 6.565 23 C -0.158 4.158 24 C 0.113 3.887 25 H 0.263 0.737 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.386 0.614 36 H 0.159 0.841 37 H 0.043 0.957 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 -19.012 -4.589 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.025 4.025 14 N -0.326 5.326 15 C 0.362 3.638 16 O -0.416 6.416 17 C -0.227 4.227 18 C -0.032 4.032 19 O -0.069 6.069 20 C -0.076 4.076 21 C 0.084 3.916 22 O -0.372 6.372 23 C -0.178 4.178 24 C -0.007 4.007 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.233 0.767 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.177 0.823 37 H 0.061 0.939 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.431 -17.935 -4.275 18.962 hybrid contribution 0.651 0.526 -0.312 0.893 sum -3.780 -17.409 -4.587 18.396 Atomic orbital electron populations 1.69895 1.05761 1.26733 1.49464 1.25055 0.94872 0.99271 0.94838 0.86536 0.80045 0.83802 0.77623 1.19789 1.20973 1.21013 1.21125 0.92951 0.90118 1.51683 0.92292 1.19057 0.92652 0.92327 0.93905 0.95268 1.21632 0.98535 0.94143 1.00523 1.21934 0.98567 0.98962 0.97638 1.21968 0.93637 0.88698 0.98234 1.48361 1.05002 1.09108 1.70177 1.17288 0.82441 0.86532 0.77519 1.90812 1.61960 1.38600 1.50225 1.21699 0.98880 0.95623 1.06478 1.24318 0.97119 0.81598 1.00166 1.83707 1.44545 1.23211 1.55418 1.21708 0.90752 0.95404 0.99738 1.20254 0.96599 0.84031 0.90761 1.86592 1.76748 1.24887 1.49002 1.22714 1.00291 0.90836 1.03929 1.22405 0.98639 0.81064 0.98575 0.92705 0.93034 0.93210 0.92205 0.92272 0.89793 0.92225 0.76655 0.91703 0.90159 0.76612 0.82332 0.93882 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 11.41 55.43 0.63 -25.31 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.25 8.56 -34.44 -0.29 -14.55 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.04 1.00 2.26 -91.42 -0.21 0.79 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.26 5.10 -26.69 -0.14 -2.40 16 12 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 13 C 0.10 1.65 5.79 -3.71 -0.02 1.62 16 14 N -0.59 -12.55 2.97 -173.78 -0.52 -13.07 16 15 C 0.58 12.31 7.62 -12.54 -0.10 12.22 16 16 O -0.54 -13.65 16.52 5.26 0.09 -13.57 16 17 C -0.22 -3.76 5.49 -103.27 -0.57 -4.33 16 18 C 0.04 0.55 12.08 30.08 0.36 0.92 16 19 O -0.17 -2.36 10.52 7.67 0.08 -2.28 16 20 C -0.03 -0.34 6.91 -35.74 -0.25 -0.59 16 21 C 0.16 1.29 7.56 36.01 0.27 1.56 16 22 O -0.57 -4.88 13.64 -35.23 -0.48 -5.36 16 23 C -0.16 -2.16 8.57 -37.45 -0.32 -2.48 16 24 C 0.11 2.81 5.42 -3.48 -0.02 2.79 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.26 4.05 -51.93 -0.21 1.05 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.22 2.66 8.06 -52.49 -0.42 2.23 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.39 1.15 9.12 45.56 0.42 1.57 16 36 H 0.16 1.86 7.19 -52.49 -0.38 1.48 16 37 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.12 3.53 5.16 -51.93 -0.27 3.26 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -34.64 315.58 -6.20 -40.85 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.21 Total: 2.82 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.53 Total: -5.23 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.12 Total: -38.38 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.31 Total: -21.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.64 -6.20 -40.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330263752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.033 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds