Wall clock time and date at job start Fri Apr 10 2020 17:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47193 * 2 1 4 4 C 1.53004 * 109.46772 * 59.99905 * 3 2 1 5 5 O 1.42901 * 109.46883 * 299.99927 * 3 2 1 6 6 C 1.50694 * 109.46947 * 179.97438 * 3 2 1 7 7 O 1.21287 * 120.00586 * 334.99965 * 6 3 2 8 8 N 1.34781 * 119.99866 * 155.00273 * 6 3 2 9 9 C 1.39988 * 120.00094 * 175.49625 * 8 6 3 10 10 C 1.38922 * 120.00567 * 215.11785 * 9 8 6 11 11 C 1.37998 * 120.00356 * 180.02562 * 10 9 8 12 12 C 1.38906 * 119.99947 * 0.02562 * 11 10 9 13 13 O 1.35774 * 119.99818 * 179.97438 * 12 11 10 14 14 C 1.34817 * 117.00163 * 5.34070 * 13 12 11 15 15 H 1.08003 * 119.99730 * 354.96572 * 14 13 12 16 16 C 1.38636 * 119.99972 * 174.96726 * 14 13 12 17 17 N 1.31563 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99824 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47100 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47069 * 119.99518 * 18 16 14 21 21 H 1.48494 * 109.47153 * 239.99921 * 18 16 14 22 22 C 1.38905 * 120.00375 * 0.25510 * 12 11 10 23 23 C 1.38005 * 120.00450 * 359.44734 * 22 12 11 24 24 H 1.09001 * 109.46722 * 60.00033 * 1 2 3 25 25 H 1.08997 * 109.47263 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46981 * 300.00167 * 1 2 3 27 27 H 1.09001 * 109.47473 * 240.00021 * 2 1 3 28 28 H 1.09003 * 109.47161 * 119.99681 * 2 1 3 29 29 H 1.09000 * 109.46345 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47216 * 299.99712 * 4 3 2 31 31 H 1.08994 * 109.47231 * 60.00498 * 4 3 2 32 32 H 0.96696 * 113.99653 * 299.99867 * 5 3 2 33 33 H 0.97001 * 119.99679 * 355.49355 * 8 6 3 34 34 H 1.08004 * 119.99516 * 0.02562 * 10 9 8 35 35 H 1.07996 * 119.99820 * 180.02562 * 11 10 9 36 36 H 0.97002 * 119.99870 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.00152 * 179.70440 * 22 12 11 38 38 H 1.07996 * 120.00764 * 180.27369 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.5637 2.1161 -1.1668 6 6 3.5470 1.4425 0.0006 7 8 4.1533 0.4906 0.4449 8 7 4.2211 2.5003 -0.4925 9 6 5.6177 2.5422 -0.4064 10 6 6.2650 3.7541 -0.2007 11 6 7.6418 3.7954 -0.1164 12 6 8.3805 2.6254 -0.2378 13 8 9.7351 2.6662 -0.1554 14 6 10.2940 3.8531 0.1550 15 1 9.6756 4.7340 0.2453 16 6 11.6625 3.9430 0.3581 17 7 12.4157 2.8699 0.2485 18 14 12.4369 5.5878 0.7874 19 1 11.3813 6.6305 0.8507 20 1 13.1126 5.4877 2.1060 21 1 13.4322 5.9528 -0.2524 22 6 7.7338 1.4144 -0.4494 23 6 6.3566 1.3720 -0.5276 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8930 3.1915 1.2490 30 1 0.4400 2.1638 1.2492 31 1 1.8933 1.6500 2.1392 32 1 1.8491 1.7126 -1.9979 33 1 3.7385 3.2325 -0.9070 34 1 5.6907 4.6639 -0.1066 35 1 8.1449 4.7375 0.0440 36 1 13.3732 2.9329 0.3902 37 1 8.3085 0.5054 -0.5486 38 1 5.8535 0.4298 -0.6877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333060616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:09:38 Heat of formation + Delta-G solvation = -90.638363 kcal Electronic energy + Delta-G solvation = -21315.777209 eV Core-core repulsion = 17931.083920 eV Total energy + Delta-G solvation = -3384.693289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63806 -38.95043 -37.60489 -36.40035 -34.09543 -33.30163 -32.19677 -30.23720 -29.93165 -27.91875 -25.63435 -25.19477 -22.67390 -22.14350 -20.83620 -20.04308 -18.42858 -17.85835 -17.29447 -16.50714 -15.91770 -15.61758 -15.13441 -14.68304 -14.57575 -14.18832 -13.70477 -13.59648 -13.28837 -12.92563 -12.86019 -12.69870 -12.49628 -12.37157 -12.12849 -11.86859 -11.68650 -11.55466 -11.53358 -11.18913 -11.06124 -10.72316 -10.70709 -10.44448 -9.69201 -9.45858 -9.20364 -8.72587 -8.22954 -6.95973 -6.45991 -4.04088 2.02495 2.18090 2.71824 3.11159 3.12733 3.18074 3.19050 3.81907 3.95760 4.40938 4.53578 4.55524 4.70782 5.07663 5.09277 5.17576 5.31123 5.32231 5.47222 5.54382 5.55903 5.68081 5.73855 5.77081 5.94946 6.04289 6.12589 6.20073 6.25721 6.78411 6.82301 6.93006 7.12698 7.13838 7.21622 7.39411 7.69038 7.76279 7.98558 8.29820 8.99438 9.69565 10.72029 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.046676 B = 0.003212 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.739307 B = 8716.370145 C = 9025.807242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.122 3.878 4 C -0.139 4.139 5 O -0.551 6.551 6 C 0.479 3.521 7 O -0.522 6.522 8 N -0.651 5.651 9 C 0.030 3.970 10 C -0.088 4.088 11 C -0.220 4.220 12 C 0.148 3.852 13 O -0.176 6.176 14 C -0.392 4.392 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.861 5.861 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.180 4.180 23 C -0.067 4.067 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.381 0.619 33 H 0.407 0.593 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.270 0.730 37 H 0.121 0.879 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.939 -0.387 -1.641 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.079 3.921 4 C -0.196 4.196 5 O -0.357 6.357 6 C 0.265 3.735 7 O -0.398 6.398 8 N -0.296 5.296 9 C -0.062 4.062 10 C -0.108 4.108 11 C -0.240 4.240 12 C 0.094 3.906 13 O -0.079 6.079 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.496 5.496 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.200 4.200 23 C -0.087 4.087 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.229 0.771 33 H 0.242 0.758 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.374 -0.911 -0.867 20.413 hybrid contribution 0.490 0.922 -0.365 1.106 sum -19.884 0.011 -1.232 19.922 Atomic orbital electron populations 1.21765 0.94614 1.01692 1.02529 1.21997 0.96760 0.94484 1.04247 1.21467 0.88360 0.94045 0.88274 1.21789 1.02611 1.00895 0.94311 1.86549 1.76712 1.56753 1.15652 1.21450 0.90626 0.83060 0.78392 1.90714 1.69617 1.33972 1.45476 1.43235 1.05628 1.22498 1.58197 1.17310 0.81222 0.94826 1.12873 1.20499 0.94263 0.95591 1.00478 1.20979 0.93147 0.99068 1.10787 1.19415 0.84967 0.93110 0.93104 1.83990 1.13558 1.34671 1.75730 1.21372 0.91520 0.85052 1.48855 0.88998 1.25297 0.95279 0.99309 0.96678 1.70053 1.05907 1.28226 1.45449 0.85641 0.79271 0.80055 0.78413 1.19099 1.20136 1.20137 1.20152 0.93300 0.96281 1.10236 1.20718 0.92532 0.97230 0.98247 0.92051 0.92546 0.92294 0.91307 0.89697 0.91371 0.90312 0.90368 0.77067 0.75795 0.87139 0.85062 0.92036 0.86117 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.41 37.16 0.35 -0.73 16 2 C -0.14 -1.26 4.71 -26.73 -0.13 -1.38 16 3 C 0.12 1.22 1.01 -91.77 -0.09 1.13 16 4 C -0.14 -1.26 8.47 37.16 0.31 -0.95 16 5 O -0.55 -4.62 11.58 -35.23 -0.41 -5.03 16 6 C 0.48 6.64 6.54 -10.99 -0.07 6.56 16 7 O -0.52 -9.21 13.53 5.55 0.08 -9.14 16 8 N -0.65 -9.01 5.27 -9.82 -0.05 -9.06 16 9 C 0.03 0.54 6.30 -83.62 -0.53 0.01 16 10 C -0.09 -1.60 9.96 -39.42 -0.39 -2.00 16 11 C -0.22 -4.74 9.16 -39.42 -0.36 -5.11 16 12 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 13 O -0.18 -5.05 9.75 0.01 0.00 -5.05 16 14 C -0.39 -10.92 9.48 30.88 0.29 -10.63 16 15 H 0.09 2.36 5.20 -52.48 -0.27 2.08 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 18 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 C -0.18 -3.98 9.98 -39.42 -0.39 -4.38 16 23 C -0.07 -1.33 8.69 -39.41 -0.34 -1.68 16 24 H 0.06 0.43 7.68 -51.93 -0.40 0.04 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.59 6.43 -51.93 -0.33 0.26 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.38 2.19 9.04 45.56 0.41 2.61 16 33 H 0.41 4.47 8.19 -40.82 -0.33 4.14 16 34 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 35 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 38 H 0.13 2.45 6.23 -52.49 -0.33 2.13 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -32.74 320.23 -5.49 -38.23 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -3.96 Total: 9.19 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.71 Total: -14.82 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.71 Total: -33.63 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.33 Total: -19.22 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.74 -5.49 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333060616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.407 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds